Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35071 Trifolium pratense HOM05D004773 ORTHO05D005943 3.1e-27 124.4 63 100.0
VMungo0464G1467 Vigna mungo HOM05D004773 ORTHO05D005943 5.7e-21 103.6 58 84.5
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 1.6e-20 102.1 52 96.2
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 4.8e-20 100.5 52 94.2
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 2.4e-19 98.2 53 86.8
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 3.1e-19 97.8 52 90.4
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 1.2e-18 95.9 52 86.5
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 3.4e-18 94.4 52 84.6
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 2.2e-17 91.7 52 80.8
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 3.8e-17 90.9 52 82.7
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 5.0e-17 90.5 52 80.8
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 5.0e-17 90.5 52 82.7
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 6.5e-17 90.1 52 80.8
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 6.5e-17 90.1 52 80.8
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 1.1e-16 89.4 52 80.8
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.4e-16 89.0 52 78.8
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 1.9e-16 88.6 52 78.8
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 1.9e-16 88.6 52 76.9
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 1.9e-16 88.6 52 78.8
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 1.9e-16 88.6 52 78.8
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 1.9e-16 88.6 52 75.0
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 1.9e-16 88.6 52 76.9
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 1.9e-16 88.6 52 80.8
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 1.9e-16 88.6 52 76.9
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 2.5e-16 88.2 52 78.8
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 3.2e-16 87.8 52 75.0
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 3.2e-16 87.8 52 80.8
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 3.2e-16 87.8 52 76.9
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 3.2e-16 87.8 52 78.8
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 4.2e-16 87.4 52 75.0
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 4.2e-16 87.4 52 76.9
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 5.5e-16 87.0 52 78.8
PSO782G1422 Papaver somniferum HOM05D004773 ORTHO05D005943 5.5e-16 87.0 52 76.9
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 5.5e-16 87.0 52 75.0
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 7.2e-16 86.7 52 76.9
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 7.2e-16 86.7 52 76.9
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 7.2e-16 86.7 52 76.9
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 7.2e-16 86.7 52 76.9
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 9.3e-16 86.3 52 73.1
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 9.3e-16 86.3 52 75.0
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 9.3e-16 86.3 52 75.0
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 1.2e-15 85.9 52 75.0
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 1.2e-15 85.9 52 76.9
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 1.2e-15 85.9 54 74.1
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 1.2e-15 85.9 52 75.0
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 1.2e-15 85.9 54 74.1
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 1.2e-15 85.9 54 74.1
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 1.2e-15 85.9 52 76.9
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 1.2e-15 85.9 52 73.1
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.6e-15 85.5 52 75.0
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 1.6e-15 85.5 54 74.1
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 2.1e-15 85.1 52 75.0
Gohir.A11G222000 Gossypium hirsutum HOM05D004773 ORTHO05D005943 2.1e-15 85.1 52 73.1
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 2.1e-15 85.1 52 73.1
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 2.1e-15 85.1 52 75.0
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 2.7e-15 84.7 52 73.1
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 2.7e-15 84.7 52 75.0
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 2.7e-15 84.7 54 72.2
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 3.6e-15 84.3 52 73.1
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 3.6e-15 84.3 52 75.0
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 7.9e-15 83.2 52 71.2
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 7.9e-15 83.2 52 73.1
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 7.9e-15 83.2 52 73.1
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 1.0e-14 82.8 52 69.2
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 1.0e-14 82.8 52 71.2
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 1.3e-14 82.4 52 69.2
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 1.3e-14 82.4 52 69.2
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 1.3e-14 82.4 52 73.1
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 1.3e-14 82.4 51 70.6
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 1.3e-14 82.4 52 73.1
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 1.3e-14 82.4 52 71.2
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 1.3e-14 82.4 52 69.2
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 1.8e-14 82.0 51 70.6
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 1.8e-14 82.0 52 69.2
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 1.8e-14 82.0 52 71.2
unitig_37.g12340 Utricularia gibba HOM05D004773 ORTHO05D005943 1.8e-14 82.0 57 66.7
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 2.3e-14 81.6 52 67.3
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 3.0e-14 81.3 52 73.1
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 3.0e-14 81.3 62 62.9
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 3.0e-14 81.3 52 71.2
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 3.9e-14 80.9 52 71.2
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 5.1e-14 80.5 53 67.9
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 6.7e-14 80.1 52 69.2
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 1.1e-13 79.3 52 69.2
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 1.5e-13 79.0 52 67.3
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 1.9e-13 78.6 52 69.2
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 1.9e-13 78.6 52 69.2
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 4.3e-13 77.4 50 68.0
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 5.7e-13 77.0 52 63.5
BcaC09g47749 Brassica carinata HOM05D004773 ORTHO05D005943 7.4e-13 76.6 60 58.3
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 7.4e-13 76.6 52 69.2
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 7.4e-13 76.6 52 63.5
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 9.7e-13 76.3 54 64.8
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.3e-12 75.9 52 65.4
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.3e-12 75.9 53 69.8
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 4.8e-12 73.9 52 67.3
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.2e-12 73.2 52 69.2
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.2e-12 73.2 52 69.2
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.2e-12 73.2 52 69.2
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 1.1e-11 72.8 51 70.6
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.1e-11 72.8 51 70.6
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 1.8e-11 72.0 67 59.7
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.8e-11 72.0 52 69.2
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.4e-11 71.6 52 69.2
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.1e-11 71.2 52 69.2
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 5.3e-11 70.5 52 57.7
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 6.9e-11 70.1 51 68.6
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 6.9e-11 70.1 51 68.6
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 1.2e-10 69.3 53 60.4
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 1.5e-10 68.9 52 61.5
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 2.0e-10 68.6 52 61.5
AT3G03500 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 2.0e-10 68.6 52 61.5
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 2.6e-10 68.2 52 53.8
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 3.4e-10 67.8 52 61.5
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 5.9e-10 67.0 52 59.6
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 5.9e-10 67.0 52 59.6
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 5.9e-10 67.0 52 57.7
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 5.9e-10 67.0 52 59.6
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 7.7e-10 66.6 52 59.6
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 7.7e-10 66.6 52 55.8
SEGI_31644 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 7.7e-10 66.6 54 55.6
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 1.3e-09 65.9 52 57.7
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 1.3e-09 65.9 51 60.8
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 1.3e-09 65.9 51 60.8
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 1.3e-09 65.9 51 56.9
COL.COLO4_31150 Corchorus olitorius HOM05D004773 ORTHO05D005943 1.7e-09 65.5 52 57.7
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 2.2e-09 65.1 52 55.8
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 8.5e-09 63.2 52 59.6
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 1.9e-08 62.0 52 53.8
AagrBONN_evm.TU.Sc2ySwM_362.2127 Anthoceros agrestis HOM05D004773 ORTHO05D005943 2.5e-08 61.6 52 50.0
Sp3g02490 Schrenkiella parvula HOM05D004773 ORTHO05D005943 2.5e-08 61.6 50 60.0
PSO063G1994 Papaver somniferum HOM05D004773 ORTHO05D005943 3.2e-08 61.2 52 50.0
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 3.2e-08 61.2 52 50.0
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 4.2e-08 60.8 53 52.8


User provided reference genes

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