Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35062 Trifolium pratense HOM05D000486 ORTHO05D013772 1.0e-27 125.9 59 100.0
Medtr1g059700 Medicago truncatula HOM05D000486 ORTHO05D000375 1.4e-21 105.5 57 82.5
Ca_30900_v3 Cicer arietinum L. HOM05D000486 ORTHO05D000375 1.8e-21 105.1 59 79.7
Psat6g084360 Pisum sativum HOM05D000486 ORTHO05D000375 4.1e-21 104.0 58 79.3
Glyma.10G074800 Glycine max HOM05D000486 ORTHO05D000375 7.4e-15 83.2 61 70.5
Lj1g0023103 Lotus japonicus HOM05D000486 ORTHO05D000375 2.8e-14 81.3 62 61.3
Medtr7g105050 Medicago truncatula HOM05D000486 ORTHO05D000375 8.2e-14 79.7 61 57.4
Phvul.007G227200 Phaseolus vulgaris HOM05D000486 ORTHO05D000375 8.2e-14 79.7 60 66.7
Lalb_Chr02g0154821 Lupinus albus HOM05D000486 ORTHO05D000375 1.4e-13 79.0 60 63.3
arahy.Tifrunner.gnm1.ann1.UCJA0M Arachis hypogaea HOM05D000486 ORTHO05D000375 2.4e-13 78.2 63 58.7
arahy.Tifrunner.gnm1.ann1.3H6ZQU Arachis hypogaea HOM05D000486 ORTHO05D013772 6.9e-13 76.6 62 64.5
arahy.Tifrunner.gnm1.ann1.CVW1KS Arachis hypogaea HOM05D000486 ORTHO05D013772 6.9e-13 76.6 62 64.5
Lalb_Chr20g0111631 Lupinus albus HOM05D000486 ORTHO05D000375 6.9e-13 76.6 51 64.7
Lj5g0020930 Lotus japonicus HOM05D000486 ORTHO05D000375 9.1e-13 76.3 54 68.5
Lalb_Chr01g0018061 Lupinus albus HOM05D000486 ORTHO05D013772 1.2e-12 75.9 62 58.1
Psat3g031240 Pisum sativum HOM05D000486 ORTHO05D000375 1.2e-12 75.9 59 55.9
arahy.Tifrunner.gnm1.ann1.61U43X Arachis hypogaea HOM05D000486 ORTHO05D000375 2.0e-12 75.1 51 62.7
Glyma.19G195400 Glycine max HOM05D000486 ORTHO05D000375 2.0e-12 75.1 61 54.1
Glyma.03G197400 Glycine max HOM05D000486 ORTHO05D000375 4.5e-12 73.9 62 53.2
Manes.09G053500 Manihot esculenta HOM05D000486 ORTHO05D000375 2.9e-11 71.2 57 54.4
arahy.Tifrunner.gnm1.ann1.XHN8S9 Arachis hypogaea HOM05D000486 ORTHO05D000375 5.0e-11 70.5 51 60.8
Oeu002494.1 Olea europaea HOM05D000486 ORTHO05D000375 1.4e-10 68.9 56 53.6
Sabra16G0079500 Salix brachista HOM05D000486 ORTHO05D000375 1.9e-10 68.6 57 49.1
Sabra16G0082100 Salix brachista HOM05D000486 ORTHO05D000375 1.9e-10 68.6 57 49.1
Sabra16G0082300 Salix brachista HOM05D000486 ORTHO05D000375 1.9e-10 68.6 57 49.1
SalBow5G1557 Salvia bowleyana HOM05D000486 ORTHO05D000375 4.2e-10 67.4 57 47.4
Potri.016G077500 Populus trichocarpa HOM05D000486 ORTHO05D000375 7.2e-10 66.6 58 48.3
Peaxi162Scf00146g00812 Petunia axillaris HOM05D000486 ORTHO05D000375 9.4e-10 66.2 46 54.3
Gorai.006G153800 Gossypium raimondii HOM05D000486 ORTHO05D000375 1.2e-09 65.9 58 55.2
Peaxi162Scf00146g00813 Petunia axillaris HOM05D000486 ORTHO05D000375 1.2e-09 65.9 46 54.3
Thecc.05G092400 Theobroma cacao HOM05D000486 ORTHO05D000375 2.1e-09 65.1 54 57.4
Aqoxy4G02734 Aquilegia oxysepala HOM05D000486 ORTHO05D000375 2.7e-09 64.7 50 60.0
CiPaw.10G011500 Carya illinoinensis HOM05D000486 ORTHO05D000375 2.7e-09 64.7 53 49.1
Gohir.D01G194550 Gossypium hirsutum HOM05D000486 ORTHO05D013772 3.6e-09 64.3 63 50.8
Gohir.D08G110808 Gossypium hirsutum HOM05D000486 ORTHO05D013772 7.9e-09 63.2 63 47.6
Nitab4.5_0024779g0010 Nicotiana tabacum HOM05D000486 ORTHO05D013772 7.9e-09 63.2 51 52.9
Duzib093G0376 Durio zibethinus HOM05D000486 ORTHO05D000375 1.4e-08 62.4 62 46.8
Gohir.D04G079968 Gossypium hirsutum HOM05D000486 ORTHO05D013772 1.4e-08 62.4 56 48.2
Manes.08G027300 Manihot esculenta HOM05D000486 ORTHO05D000375 1.4e-08 62.4 58 55.2
Potri.006G210600 Populus trichocarpa HOM05D000486 ORTHO05D000375 1.4e-08 62.4 58 46.6
Peaxi162Scf00096g00825 Petunia axillaris HOM05D000486 ORTHO05D000375 1.8e-08 62.0 56 46.4
Potri.016G077400 Populus trichocarpa HOM05D000486 ORTHO05D000375 1.8e-08 62.0 51 49.0
Sabra06G0162100 Salix brachista HOM05D000486 ORTHO05D000375 1.8e-08 62.0 60 51.7
Solyc10g083290.4 Solanum lycopersicum HOM05D000486 ORTHO05D000375 1.8e-08 62.0 50 56.0
Sopen10g032770 Solanum pennellii HOM05D000486 ORTHO05D000375 1.8e-08 62.0 50 56.0
TAR633G1502 Trochodendron aralioides HOM05D000486 ORTHO05D000375 1.8e-08 62.0 40 60.0
Cc00_g15520 Coffea canephora HOM05D000486 ORTHO05D000375 2.3e-08 61.6 45 55.6
Nitab4.5_0003404g0040 Nicotiana tabacum HOM05D000486 ORTHO05D000375 2.3e-08 61.6 58 48.3
Cc06_g06090 Coffea canephora HOM05D000486 ORTHO05D000375 3.0e-08 61.2 51 52.9
MD14G1028500 Malus domestica HOM05D000486 ORTHO05D000375 3.0e-08 61.2 51 52.9
Manes.08G027200 Manihot esculenta HOM05D000486 ORTHO05D000375 3.0e-08 61.2 58 50.0
Prupe.7G103200 Prunus persica HOM05D000486 ORTHO05D000375 3.0e-08 61.2 46 58.7
AL5G33380 Arabidopsis lyrata HOM05D000486 ORTHO05D000375 3.9e-08 60.8 61 54.1
BcaB01g03854 Brassica carinata HOM05D000486 ORTHO05D000375 3.9e-08 60.8 61 44.3
CARHR130430 Cardamine hirsuta HOM05D000486 ORTHO05D000375 3.9e-08 60.8 57 50.9
Migut.J01013 Erythranthe guttata HOM05D000486 ORTHO05D000375 3.9e-08 60.8 57 45.6
PGSC0003DMG402028252 Solanum tuberosum HOM05D000486 ORTHO05D000375 3.9e-08 60.8 50 54.0
TAR369G0260 Trochodendron aralioides HOM05D000486 ORTHO05D000375 3.9e-08 60.8 61 44.3
Dinv21184 Davidia involucrata HOM05D000486 ORTHO05D000375 5.1e-08 60.5 51 49.0
Hma1.2p1_0820F.1_g223980 Hydrangea macrophylla HOM05D000486 ORTHO05D000375 5.1e-08 60.5 52 51.9
MD12G1028200 Malus domestica HOM05D000486 ORTHO05D000375 5.1e-08 60.5 53 47.2
Ciclev10013701m.g Citrus clementina HOM05D000486 ORTHO05D000375 6.7e-08 60.1 61 45.9
Gohir.A09G140400 Gossypium hirsutum HOM05D000486 ORTHO05D000375 6.7e-08 60.1 60 50.0
Gohir.D01G140940 Gossypium hirsutum HOM05D000486 ORTHO05D013772 6.7e-08 60.1 56 50.0
Gorai.006G153700 Gossypium raimondii HOM05D000486 ORTHO05D000375 6.7e-08 60.1 60 50.0
Nitab4.5_0011403g0010 Nicotiana tabacum HOM05D000486 ORTHO05D000375 6.7e-08 60.1 50 54.0
MSTRG.18892 Avicennia marina HOM05D000486 ORTHO05D000375 8.8e-08 59.7 39 61.5
MSTRG.26628 Avicennia marina HOM05D000486 ORTHO05D013772 8.8e-08 59.7 39 61.5
Gohir.D09G134100 Gossypium hirsutum HOM05D000486 ORTHO05D000375 8.8e-08 59.7 60 50.0
Gorai.012G072400 Gossypium raimondii HOM05D000486 ORTHO05D013772 8.8e-08 59.7 63 44.4
Peaxi162Scf00096g00715 Petunia axillaris HOM05D000486 ORTHO05D000375 8.8e-08 59.7 51 49.0
Nitab4.5_0003404g0020 Nicotiana tabacum HOM05D000486 ORTHO05D000375 1.1e-07 59.3 51 52.9
Solyc10g083300.2 Solanum lycopersicum HOM05D000486 ORTHO05D000375 1.1e-07 59.3 58 51.7
C03p23400 Brassica napus HOM05D000486 ORTHO05D000375 1.5e-07 58.9 53 47.2
BolC3t14738H Brassica oleracea HOM05D000486 ORTHO05D000375 1.5e-07 58.9 53 47.2
MELO3C009488.2 Cucumis melo HOM05D000486 ORTHO05D000375 1.5e-07 58.9 53 54.7
DCAR_020738 Daucus carota HOM05D000486 ORTHO05D000375 1.5e-07 58.9 62 45.2
Nitab4.5_0001933g0060 Nicotiana tabacum HOM05D000486 ORTHO05D000375 1.5e-07 58.9 43 55.8
GSVIVG01033873001 Vitis vinifera HOM05D000486 ORTHO05D000375 1.5e-07 58.9 43 55.8
Aqoxy4G02733 Aquilegia oxysepala HOM05D000486 ORTHO05D000375 2.0e-07 58.5 51 54.9
Duzib128G0847 Durio zibethinus HOM05D000486 ORTHO05D000375 2.0e-07 58.5 51 52.9
PGR004G2475 Punica granatum HOM05D000486 ORTHO05D000375 2.0e-07 58.5 37 59.5
unitig_744.g24701 Utricularia gibba HOM05D000486 ORTHO05D000375 2.0e-07 58.5 51 45.1
DCAR_013406 Daucus carota HOM05D000486 ORTHO05D000375 2.6e-07 58.2 51 51.0
Gohir.A04G068800 Gossypium hirsutum HOM05D000486 ORTHO05D000375 2.6e-07 58.2 57 40.4
PSO063G5855 Papaver somniferum HOM05D000486 ORTHO05D000375 2.6e-07 58.2 54 48.1
PSO832G2597 Papaver somniferum HOM05D000486 ORTHO05D000375 2.6e-07 58.2 54 48.1
A04p27680 Brassica napus HOM05D000486 ORTHO05D000375 3.3e-07 57.8 58 43.1
BraA04t18263Z Brassica rapa HOM05D000486 ORTHO05D000375 3.3e-07 57.8 58 43.1
Rhsim03G0073700 Rhododendron simsii HOM05D000486 ORTHO05D000375 3.3e-07 57.8 61 47.5
CAN.G397.79 Capsicum annuum HOM05D000486 ORTHO05D000375 4.4e-07 57.4 51 47.1
Gohir.D04G097800 Gossypium hirsutum HOM05D000486 ORTHO05D000375 4.4e-07 57.4 57 40.4
Gohir.D06G157850 Gossypium hirsutum HOM05D000486 ORTHO05D013772 4.4e-07 57.4 55 50.9
Lsat_1_v5_gn_5_164560 Lactuca sativa HOM05D000486 ORTHO05D000375 4.4e-07 57.4 35 62.9
MBI17_g29783_MAGBIO Magnolia biondii HOM05D000486 ORTHO05D013772 4.4e-07 57.4 53 52.8
Nn2g14209 Nelumbo nucifera HOM05D000486 ORTHO05D000375 4.4e-07 57.4 62 50.0
Prupe.7G103400 Prunus persica HOM05D000486 ORTHO05D000375 4.4e-07 57.4 62 45.2
PGSC0003DMG400011037 Solanum tuberosum HOM05D000486 ORTHO05D000375 4.4e-07 57.4 62 41.9
Cpa.g.sc104.108 Carica papaya HOM05D000486 ORTHO05D000375 5.7e-07 57.0 59 44.1
Lsat_1_v5_gn_5_164540 Lactuca sativa HOM05D000486 ORTHO05D000375 7.4e-07 56.6 38 57.9
Oeu047848.1 Olea europaea HOM05D000486 ORTHO05D013772 7.4e-07 56.6 50 52.0
RcHm_v2.0_Chr3g0474371 Rosa chinensis HOM05D000486 ORTHO05D000375 7.4e-07 56.6 55 43.6
BolC4t28000H Brassica oleracea HOM05D000486 ORTHO05D000375 9.7e-07 56.2 58 43.1
CSS0039950 Camellia sinensis var. sinensis HOM05D000486 ORTHO05D000375 9.7e-07 56.2 55 47.3
Thhalv10010231m.g Eutrema salsugineum HOM05D000486 ORTHO05D000375 9.7e-07 56.2 59 49.2
Prupe.7G103300 Prunus persica HOM05D000486 ORTHO05D000375 9.7e-07 56.2 47 48.9
Actinidia05413 Actinidia chinensis HOM05D000486 ORTHO05D000375 1.3e-06 55.8 61 42.6
CARHR162420 Cardamine hirsuta HOM05D000486 ORTHO05D000375 1.3e-06 55.8 58 50.0
Sopen09g004830 Solanum pennellii HOM05D000486 ORTHO05D000375 1.3e-06 55.8 56 48.2
CSS0041016 Camellia sinensis var. sinensis HOM05D000486 ORTHO05D000375 1.7e-06 55.5 55 45.5
Migut.L01797 Erythranthe guttata HOM05D000486 ORTHO05D000375 1.7e-06 55.5 51 51.0
FAN14G1314 Fragaria x ananassa HOM05D000486 ORTHO05D000375 1.7e-06 55.5 58 44.8
Sed0019124 Sechium edule HOM05D000486 ORTHO05D000375 1.7e-06 55.5 45 53.3
Solyc10g085360.3 Solanum lycopersicum HOM05D000486 ORTHO05D000375 1.7e-06 55.5 62 41.9
vmacro07425 Vaccinium macrocarpon HOM05D000486 ORTHO05D000375 1.7e-06 55.5 51 45.1
CSS0031558 Camellia sinensis var. sinensis HOM05D000486 ORTHO05D000375 2.2e-06 55.1 51 47.1
CAN.G1018.14 Capsicum annuum HOM05D000486 ORTHO05D000375 2.2e-06 55.1 52 44.2
Nn6g34842 Nelumbo nucifera HOM05D000486 ORTHO05D000375 2.2e-06 55.1 57 45.6
Nitab4.5_0001875g0110 Nicotiana tabacum HOM05D000486 ORTHO05D000375 2.2e-06 55.1 57 49.1
QL07p038464 Quercus lobata HOM05D000486 ORTHO05D000375 2.2e-06 55.1 61 41.0
CsaV3_3G037440 Cucumis sativus L. HOM05D000486 ORTHO05D000375 2.8e-06 54.7 63 46.0
THA.LOC104799757 Tarenaya hassleriana HOM05D000486 ORTHO05D000375 2.8e-06 54.7 55 40.0
Aa31LG10G7620 Aethionema arabicum HOM05D000486 ORTHO05D000375 3.7e-06 54.3 55 47.3
Thhalv10016415m.g Eutrema salsugineum HOM05D000486 ORTHO05D000375 3.7e-06 54.3 62 41.9
TWI74G1441 Tripterygium wilfordii HOM05D000486 ORTHO05D000375 3.7e-06 54.3 37 54.1
Carub.0004s1795 Capsella rubella HOM05D000486 ORTHO05D000375 4.8e-06 53.9 62 43.5
FvH4_6g19270 Fragaria vesca HOM05D000486 ORTHO05D000375 4.8e-06 53.9 58 43.1
FAN02G1370 Fragaria x ananassa HOM05D000486 ORTHO05D000375 4.8e-06 53.9 58 43.1
Nitab4.5_0001875g0120 Nicotiana tabacum HOM05D000486 ORTHO05D000375 6.3e-06 53.5 51 43.1
Aa31LG5G21310 Aethionema arabicum HOM05D000486 ORTHO05D000375 8.2e-06 53.1 51 49.0
AL4G32290 Arabidopsis lyrata HOM05D000486 ORTHO05D000375 8.2e-06 53.1 54 46.3
AT2G36190 Arabidopsis thaliana HOM05D000486 ORTHO05D000375 8.2e-06 53.1 63 39.7


User provided reference genes

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