Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35014 Trifolium pratense HOM05D008072 ORTHO05D010204 3.7e-52 208.0 109 100.0
Medtr8g013930 Medicago truncatula HOM05D008072 ORTHO05D010204 2.7e-31 138.7 111 70.3
Psat4g197480 Pisum sativum HOM05D008072 ORTHO05D010204 1.2e-29 133.3 111 69.4
Lj3g0001751 Lotus japonicus HOM05D008072 ORTHO05D010204 1.4e-27 126.3 110 60.9
Glyma.07G016900 Glycine max HOM05D008072 ORTHO05D010204 1.6e-26 122.9 109 63.3
VMungo0331G2041 Vigna mungo HOM05D008072 ORTHO05D010204 5.9e-26 120.9 110 63.6
Phvul.010G146400 Phaseolus vulgaris HOM05D008072 ORTHO05D010204 1.3e-25 119.8 110 61.8
Glyma.08G202200 Glycine max HOM05D008072 ORTHO05D010204 5.2e-22 107.8 109 56.9
Lalb_Chr04g0262911 Lupinus albus HOM05D008072 ORTHO05D010204 1.2e-21 106.7 110 55.5
arahy.Tifrunner.gnm1.ann1.XD1M86 Arachis hypogaea HOM05D008072 ORTHO05D010204 1.5e-16 89.7 109 52.3
arahy.Tifrunner.gnm1.ann1.UX9EW1 Arachis hypogaea HOM05D008072 ORTHO05D010204 5.6e-16 87.8 110 51.8
MD17G1186400 Malus domestica HOM05D008072 ORTHO05D010204 5.6e-16 87.8 115 45.2
Prupe.3G061100 Prunus persica HOM05D008072 ORTHO05D010204 2.8e-15 85.5 113 48.7
Rhsim12G0202400 Rhododendron simsii HOM05D008072 ORTHO05D010204 2.8e-15 85.5 112 49.1
Potri.001G188400 Populus trichocarpa HOM05D008072 ORTHO05D010204 1.8e-14 82.8 113 46.9
QL05p020523 Quercus lobata HOM05D008072 ORTHO05D010204 1.8e-14 82.8 109 45.9
PGR102G0255 Punica granatum HOM05D008072 ORTHO05D010204 2.3e-14 82.4 121 42.1
RcHm_v2.0_Chr2g0140071 Rosa chinensis HOM05D008072 ORTHO05D010204 6.8e-14 80.9 117 48.7
Manes.04G132700 Manihot esculenta HOM05D008072 ORTHO05D010204 8.9e-14 80.5 111 42.3
Actinidia09003 Actinidia chinensis HOM05D008072 ORTHO05D010204 2.0e-13 79.3 113 44.2
FAN02G2294 Fragaria x ananassa HOM05D008072 ORTHO05D010204 2.6e-13 79.0 116 44.8
Sabra01G0152600 Salix brachista HOM05D008072 ORTHO05D010204 2.6e-13 79.0 113 44.2
FAN05G4246 Fragaria x ananassa HOM05D008072 ORTHO05D010204 4.4e-13 78.2 116 44.0
Thecc.06G097600 Theobroma cacao HOM05D008072 ORTHO05D010204 5.8e-13 77.8 113 42.5
FvH4_6g32180 Fragaria vesca HOM05D008072 ORTHO05D010204 7.5e-13 77.4 116 44.0
FAN09G3706 Fragaria x ananassa HOM05D008072 ORTHO05D010204 1.7e-12 76.3 116 44.0
FAN14G4057 Fragaria x ananassa HOM05D008072 ORTHO05D010204 4.9e-12 74.7 117 44.4
TAR626G1017 Trochodendron aralioides HOM05D008072 ORTHO05D010204 2.4e-11 72.4 105 41.0
CSS0040470 Camellia sinensis var. sinensis HOM05D008072 ORTHO05D010204 3.2e-11 72.0 113 42.5
Dinv37992 Davidia involucrata HOM05D008072 ORTHO05D010204 7.0e-11 70.9 112 44.6
Hma1.2p1_3269F.1_g334750 Hydrangea macrophylla HOM05D008072 ORTHO05D010204 7.0e-11 70.9 113 45.1
Aqoxy7G01464 Aquilegia oxysepala HOM05D008072 ORTHO05D010204 9.2e-11 70.5 113 39.8
HanXRQChr16g0501221 Helianthus annuus HOM05D008072 ORTHO05D010204 1.2e-10 70.1 113 45.1
Cpa.g.c31416 Carica papaya HOM05D008072 ORTHO05D010204 2.0e-10 69.3 112 39.3
Oeu060494.1 Olea europaea HOM05D008072 ORTHO05D010204 2.0e-10 69.3 110 40.9
Sc10g0007210 Simmondsia chinensis HOM05D008072 ORTHO05D010204 2.0e-10 69.3 114 41.2
Ciclev10026797m.g Citrus clementina HOM05D008072 ORTHO05D010204 3.5e-10 68.6 112 39.3
Cc04_g02690 Coffea canephora HOM05D008072 ORTHO05D010204 7.8e-10 67.4 115 43.5
MSTRG.9481 Avicennia marina HOM05D008072 ORTHO05D010204 1.0e-09 67.0 112 41.1
SalBow7G3462 Salvia bowleyana HOM05D008072 ORTHO05D010204 1.0e-09 67.0 113 44.2
Atru.chr1.3499 Acer truncatum HOM05D008072 ORTHO05D010204 1.3e-09 66.6 123 38.2
Gohir.D03G059100 Gossypium hirsutum HOM05D008072 ORTHO05D010204 1.7e-09 66.2 108 42.6
Sed0011388 Sechium edule HOM05D008072 ORTHO05D010204 2.3e-09 65.9 111 39.6
MD09G1205700 Malus domestica HOM05D008072 ORTHO05D010204 3.9e-09 65.1 113 43.4
Gorai.003G063000 Gossypium raimondii HOM05D008072 ORTHO05D010204 5.0e-09 64.7 108 42.6
Duzib192G0771 Durio zibethinus HOM05D008072 ORTHO05D010204 6.6e-09 64.3 120 35.8
TWI18G1284 Tripterygium wilfordii HOM05D008072 ORTHO05D010204 6.6e-09 64.3 115 38.3
Gohir.A02G118500 Gossypium hirsutum HOM05D008072 ORTHO05D010204 1.1e-08 63.5 108 41.7
GSVIVG01017012001 Vitis vinifera HOM05D008072 ORTHO05D010204 1.5e-08 63.2 112 39.3
Peaxi162Scf00038g00843 Petunia axillaris HOM05D008072 ORTHO05D010204 2.5e-08 62.4 113 39.8
PGSC0003DMG400002533 Solanum tuberosum HOM05D008072 ORTHO05D010204 2.5e-08 62.4 113 38.9
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 5.6e-08 61.2 88 45.5
Lsat_1_v5_gn_4_99940 Lactuca sativa HOM05D008072 ORTHO05D010204 1.6e-07 59.7 90 44.4
ClCG09G000070 Citrullus lanatus HOM05D008072 ORTHO05D010204 2.1e-07 59.3 115 40.9
Sopen03g039710 Solanum pennellii HOM05D008072 ORTHO05D010204 3.6e-07 58.5 115 39.1
CANSAT56G4142 Cannabis sativa HOM05D008072 ORTHO05D010204 6.2e-07 57.8 121 37.2
Hund06655 Selenicereus undatus HOM05D008072 ORTHO05D010204 8.0e-07 57.4 104 34.6
CsaV3_7G035400 Cucumis sativus L. HOM05D008072 ORTHO05D010204 1.1e-06 57.0 117 40.2
Nn8g39117 Nelumbo nucifera HOM05D008072 ORTHO05D010204 1.4e-06 56.6 112 34.8
Nn2g11609 Nelumbo nucifera HOM05D008072 ORTHO05D010204 1.8e-06 56.2 110 36.4
Haze_15831 Corylus avellana HOM05D008072 ORTHO05D010204 3.1e-06 55.5 159 27.7
SGA_v2.0_scaffold4G02017 Striga asiatica HOM05D008072 ORTHO05D010204 3.1e-06 55.5 119 36.1
EL10Ac9g22100 Beta vulgaris HOM05D008072 ORTHO05D010204 4.0e-06 55.1 115 35.7
CiPaw.02G146800 Carya illinoinensis HOM05D008072 ORTHO05D010204 4.0e-06 55.1 63 42.9
Hund31378 Selenicereus undatus HOM05D008072 ORTHO05D010204 4.0e-06 55.1 104 33.7
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 5.2e-06 54.7 109 38.5


User provided reference genes

Program Settings