Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34985 Trifolium pratense HOM05D003234 ORTHO05D003635 1.4e-45 186.0 103 100.0
Psat4g092120 Pisum sativum HOM05D003234 ORTHO05D003635 3.1e-40 168.3 103 89.3
Lj4g0023984 Lotus japonicus HOM05D003234 ORTHO05D003635 5.4e-37 157.5 103 83.5
Hma1.2p1_0717F.1_g208130 Hydrangea macrophylla HOM05D003234 ORTHO05D003635 3.5e-28 128.3 102 69.6
Lalb_Chr09g0322471 Lupinus albus HOM05D003234 ORTHO05D003635 4.6e-28 127.9 103 69.9
Glyma.01G175400 Glycine max HOM05D003234 ORTHO05D003635 6.6e-27 124.0 103 68.9
Actinidia12120 Actinidia chinensis HOM05D003234 ORTHO05D003635 5.6e-26 120.9 105 66.7
arahy.Tifrunner.gnm1.ann1.F5AS58 Arachis hypogaea HOM05D003234 ORTHO05D003635 1.6e-25 119.4 103 68.0
arahy.Tifrunner.gnm1.ann1.WI3JHU Arachis hypogaea HOM05D003234 ORTHO05D003635 1.6e-25 119.4 103 68.0
Glyma.11G067600 Glycine max HOM05D003234 ORTHO05D003635 1.1e-24 116.7 103 66.0
Manes.01G134700 Manihot esculenta HOM05D003234 ORTHO05D003635 1.1e-24 116.7 105 66.7
CSS0031108 Camellia sinensis var. sinensis HOM05D003234 ORTHO05D003635 1.8e-24 115.9 102 62.7
unitig_21.g20955 Utricularia gibba HOM05D003234 ORTHO05D003635 1.8e-24 115.9 104 64.4
Actinidia36555 Actinidia chinensis HOM05D003234 ORTHO05D003635 2.4e-24 115.5 105 62.9
MSTRG.23532 Avicennia marina HOM05D003234 ORTHO05D003635 1.2e-23 113.2 105 61.0
Migut.H00998 Erythranthe guttata HOM05D003234 ORTHO05D003635 5.8e-23 110.9 105 63.8
Phvul.002G029601 Phaseolus vulgaris HOM05D003234 ORTHO05D003635 1.3e-22 109.8 103 60.2
GSVIVG01018978001 Vitis vinifera HOM05D003234 ORTHO05D003635 1.7e-22 109.4 105 65.7
Cc07_g09430 Coffea canephora HOM05D003234 ORTHO05D003635 2.2e-22 109.0 103 63.1
CAN.G358.101 Capsicum annuum HOM05D003234 ORTHO05D003635 2.9e-22 108.6 103 58.3
Lsat_1_v5_gn_3_77600 Lactuca sativa HOM05D003234 ORTHO05D003635 3.8e-22 108.2 104 61.5
HanXRQChr15g0482261 Helianthus annuus HOM05D003234 ORTHO05D003635 4.9e-22 107.8 105 62.9
Ciclev10026821m.g Citrus clementina HOM05D003234 ORTHO05D003635 1.4e-21 106.3 105 63.8
Sopen02g030060 Solanum pennellii HOM05D003234 ORTHO05D003635 4.2e-21 104.8 103 60.2
Thecc.01G037000 Theobroma cacao HOM05D003234 ORTHO05D003635 4.2e-21 104.8 105 58.1
ECA246G3301 Erigeron canadensis HOM05D003234 ORTHO05D003635 2.7e-20 102.1 106 60.4
Gorai.011G102100 Gossypium raimondii HOM05D003234 ORTHO05D003635 1.3e-19 99.8 105 57.1
Gohir.D10G092900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 2.3e-19 99.0 105 57.1
CiPaw.02G016600 Carya illinoinensis HOM05D003234 ORTHO05D003635 6.6e-19 97.4 105 58.1
Gohir.D12G065100 Gossypium hirsutum HOM05D003234 ORTHO05D003635 8.7e-19 97.1 105 54.3
Gorai.008G068300 Gossypium raimondii HOM05D003234 ORTHO05D003635 8.7e-19 97.1 105 54.3
Gohir.A10G095000 Gossypium hirsutum HOM05D003234 ORTHO05D003635 4.3e-18 94.7 105 55.2
Atru.chr3.563 Acer truncatum HOM05D003234 ORTHO05D003635 7.3e-18 94.0 105 57.1
Aqoxy5G01648 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 9.6e-18 93.6 102 54.9
CANSAT01G1184 Cannabis sativa HOM05D003234 ORTHO05D003635 8.1e-17 90.5 106 57.5
SGA_v2.0_scaffold276G46636 Striga asiatica HOM05D003234 ORTHO05D003635 1.1e-16 90.1 124 51.6
ATR0733G120 Amborella trichopoda HOM05D003234 ORTHO05D003635 6.9e-16 87.4 106 56.6
Dinv26826 Davidia involucrata HOM05D003234 ORTHO05D003635 7.6e-15 84.0 54 79.6
Eucgr.I02454 Eucalyptus grandis HOM05D003234 ORTHO05D003635 9.9e-15 83.6 103 50.5
Dinv39975 Davidia involucrata HOM05D003234 ORTHO05D003635 1.3e-14 83.2 102 55.9
Nn1g05018 Nelumbo nucifera HOM05D003234 ORTHO05D003635 1.7e-14 82.8 107 52.3
Aqoxy6G01093 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 1.1e-13 80.1 107 53.3
Zm00001eb009770 Zea mays HOM05D003234 ORTHO05D003635 1.4e-13 79.7 107 52.3
Migut.L00515 Erythranthe guttata HOM05D003234 ORTHO05D003635 2.1e-12 75.9 105 47.6
SEGI_11040 Sequoiadendron giganteum HOM05D003234 ORTHO05D003635 2.7e-12 75.5 106 53.8
Migut.C00924 Erythranthe guttata HOM05D003234 ORTHO05D003635 3.3e-10 68.6 107 44.9
Os03g0669600 Oryza sativa ssp. japonica HOM05D003234 ORTHO05D003635 3.3e-10 68.6 106 51.9
Gohir.A12G065000 Gossypium hirsutum HOM05D003234 ORTHO05D003635 5.6e-10 67.8 105 42.9
MSTRG.1123 Avicennia marina HOM05D003234 ORTHO05D003635 9.6e-10 67.0 107 43.9
SGA_v2.0_scaffold275G46578 Striga asiatica HOM05D003234 ORTHO05D003635 2.1e-09 65.9 107 43.0
ClCG00G002880 Citrullus lanatus HOM05D003234 ORTHO05D003635 3.6e-09 65.1 106 42.5
Hund05127 Selenicereus undatus HOM05D003234 ORTHO05D003635 3.6e-09 65.1 106 40.6
CDE04G0975 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 4.8e-09 64.7 64 56.2
ClCG08G009600 Citrullus lanatus HOM05D003234 ORTHO05D003635 6.2e-09 64.3 107 42.1
MELO3C026549.2 Cucumis melo HOM05D003234 ORTHO05D003635 6.2e-09 64.3 107 42.1
CsaV3_6G031700 Cucumis sativus L. HOM05D003234 ORTHO05D003635 6.2e-09 64.3 107 42.1
Thhalv10019348m.g Eutrema salsugineum HOM05D003234 ORTHO05D003635 8.1e-09 63.9 107 43.9
FAN15G0717 Fragaria x ananassa HOM05D003234 ORTHO05D003635 1.1e-08 63.5 107 42.1
FAN20G3055 Fragaria x ananassa HOM05D003234 ORTHO05D003635 1.1e-08 63.5 107 42.1
MD15G1003700 Malus domestica HOM05D003234 ORTHO05D003635 1.1e-08 63.5 108 41.7
RcHm_v2.0_Chr6g0304061 Rosa chinensis HOM05D003234 ORTHO05D003635 1.1e-08 63.5 107 42.1
Sp5g31330 Schrenkiella parvula HOM05D003234 ORTHO05D003635 1.1e-08 63.5 107 43.0
THA.LOC104813762 Tarenaya hassleriana HOM05D003234 ORTHO05D003635 1.1e-08 63.5 107 43.0
Glyma.06G019600 Glycine max HOM05D003234 ORTHO05D003635 1.4e-08 63.2 108 44.4
Prupe.1G356200 Prunus persica HOM05D003234 ORTHO05D003635 1.4e-08 63.2 107 42.1
THA.LOC104809745 Tarenaya hassleriana HOM05D003234 ORTHO05D003635 1.4e-08 63.2 107 43.0
Ciclev10002915m.g Citrus clementina HOM05D003234 ORTHO05D003635 1.8e-08 62.8 107 42.1
Medtr3g115080 Medicago truncatula HOM05D003234 ORTHO05D003635 1.8e-08 62.8 109 43.1
PGR031G2527 Punica granatum HOM05D003234 ORTHO05D003635 1.8e-08 62.8 108 41.7
Sed0012631 Sechium edule HOM05D003234 ORTHO05D003635 1.8e-08 62.8 107 42.1
TPR.G38123 Trifolium pratense HOM05D003234 ORTHO05D003635 1.8e-08 62.8 108 43.5
AT1G20460 Arabidopsis thaliana HOM05D003234 ORTHO05D003635 2.4e-08 62.4 107 43.0
AT1G76185 Arabidopsis thaliana HOM05D003234 ORTHO05D003635 2.4e-08 62.4 107 41.1
Duzib116G0672 Durio zibethinus HOM05D003234 ORTHO05D003635 2.4e-08 62.4 107 42.1
Hma1.2p1_1260F.1_g271060 Hydrangea macrophylla HOM05D003234 ORTHO05D003635 2.4e-08 62.4 106 41.5
Lsat_1_v5_gn_5_39760 Lactuca sativa HOM05D003234 ORTHO05D003635 2.4e-08 62.4 106 42.5
Nitab4.5_0007869g0020 Nicotiana tabacum HOM05D003234 ORTHO05D003635 2.4e-08 62.4 107 43.0
Carub.0001s1993 Capsella rubella HOM05D003234 ORTHO05D003635 3.1e-08 62.0 107 43.0
FvH4_2g37670 Fragaria vesca HOM05D003234 ORTHO05D003635 3.1e-08 62.0 107 41.1
Glyma.04G019300 Glycine max HOM05D003234 ORTHO05D003635 3.1e-08 62.0 108 43.5
Gohir.A05G180900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 3.1e-08 62.0 107 42.1
Gohir.D05G183900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 3.1e-08 62.0 107 42.1
Gorai.009G189400 Gossypium raimondii HOM05D003234 ORTHO05D003635 3.1e-08 62.0 107 42.1
Nitab4.5_0000699g0170 Nicotiana tabacum HOM05D003234 ORTHO05D003635 3.1e-08 62.0 107 43.0
Psat0s3811g0040 Pisum sativum HOM05D003234 ORTHO05D003635 3.1e-08 62.0 108 43.5
PGSC0003DMG400029411 Solanum tuberosum HOM05D003234 ORTHO05D003635 3.1e-08 62.0 107 42.1
BcaB02g07054 Brassica carinata HOM05D003234 ORTHO05D003635 4.0e-08 61.6 107 42.1
CDE02G3043 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 4.0e-08 61.6 54 61.1
Dinv31919 Davidia involucrata HOM05D003234 ORTHO05D003635 4.0e-08 61.6 107 42.1
Duzib093G1967 Durio zibethinus HOM05D003234 ORTHO05D003635 4.0e-08 61.6 107 41.1
Thhalv10009165m.g Eutrema salsugineum HOM05D003234 ORTHO05D003635 4.0e-08 61.6 107 42.1
Nitab4.5_0000588g0270 Nicotiana tabacum HOM05D003234 ORTHO05D003635 4.0e-08 61.6 107 43.9
Phvul.009G021200 Phaseolus vulgaris HOM05D003234 ORTHO05D003635 4.0e-08 61.6 108 42.6
Sp1g18170 Schrenkiella parvula HOM05D003234 ORTHO05D003635 4.0e-08 61.6 107 42.1
SEGI_02230 Sequoiadendron giganteum HOM05D003234 ORTHO05D003635 4.0e-08 61.6 68 55.9
Aa31LG7G4760 Aethionema arabicum HOM05D003234 ORTHO05D003635 5.3e-08 61.2 107 42.1
CAN.G208.7 Capsicum annuum HOM05D003234 ORTHO05D003635 5.3e-08 61.2 107 42.1
CARHR020910 Cardamine hirsuta HOM05D003234 ORTHO05D003635 5.3e-08 61.2 109 42.2
MD08G1004300 Malus domestica HOM05D003234 ORTHO05D003635 5.3e-08 61.2 108 40.7
Actinidia37965 Actinidia chinensis HOM05D003234 ORTHO05D003635 6.9e-08 60.8 107 41.1
CANSAT25G0014 Cannabis sativa HOM05D003234 ORTHO05D003635 6.9e-08 60.8 107 41.1
Gohir.A02G083600 Gossypium hirsutum HOM05D003234 ORTHO05D003635 6.9e-08 60.8 107 41.1
Peaxi162Scf00400g00314 Petunia axillaris HOM05D003234 ORTHO05D003635 6.9e-08 60.8 109 41.3
Solyc12g094510.2 Solanum lycopersicum HOM05D003234 ORTHO05D003635 6.9e-08 60.8 107 41.1
Sopen12g031400 Solanum pennellii HOM05D003234 ORTHO05D003635 6.9e-08 60.8 107 41.1
TWI12G0861 Tripterygium wilfordii HOM05D003234 ORTHO05D003635 6.9e-08 60.8 107 41.1
MSTRG.22360 Avicennia marina HOM05D003234 ORTHO05D003635 9.0e-08 60.5 107 40.2
CDE02G2075 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 9.0e-08 60.5 106 41.5
FAN27G0038 Fragaria x ananassa HOM05D003234 ORTHO05D003635 9.0e-08 60.5 107 41.1
Gohir.D02G099100 Gossypium hirsutum HOM05D003234 ORTHO05D003635 9.0e-08 60.5 107 41.1
Manes.18G007200 Manihot esculenta HOM05D003234 ORTHO05D003635 9.0e-08 60.5 107 41.1
Potri.005G248300 Populus trichocarpa HOM05D003234 ORTHO05D003635 9.0e-08 60.5 107 42.1
Sed0016414 Sechium edule HOM05D003234 ORTHO05D003635 9.0e-08 60.5 107 40.2
unitig_21.g20148 Utricularia gibba HOM05D003234 ORTHO05D003635 9.0e-08 60.5 107 42.1
BcaC08g47113 Brassica carinata HOM05D003234 ORTHO05D003635 1.2e-07 60.1 107 41.1
Lj1g0024220 Lotus japonicus HOM05D003234 ORTHO05D003635 1.2e-07 60.1 108 41.7
Peaxi162Scf01481g00038 Petunia axillaris HOM05D003234 ORTHO05D003635 1.2e-07 60.1 106 43.4
Sopen04g035840 Solanum pennellii HOM05D003234 ORTHO05D003635 1.2e-07 60.1 109 43.1
Thecc.08G055600 Theobroma cacao HOM05D003234 ORTHO05D003635 1.2e-07 60.1 107 41.1
BNapus_Darmor_BZH_scaffold_170p00030 Brassica napus HOM05D003234 ORTHO05D003635 1.5e-07 59.7 107 41.1
Cpa.g.sc26.223 Carica papaya HOM05D003234 ORTHO05D003635 1.5e-07 59.7 107 41.1
Migut.N03196 Erythranthe guttata HOM05D003234 ORTHO05D003635 1.5e-07 59.7 107 39.3
Potri.002G013000 Populus trichocarpa HOM05D003234 ORTHO05D003635 1.5e-07 59.7 107 41.1
QL06p045796 Quercus lobata HOM05D003234 ORTHO05D003635 1.5e-07 59.7 34 85.3
MSTRG.25294 Avicennia marina HOM05D003234 ORTHO05D003635 2.0e-07 59.3 107 41.1
BcaB07g32048 Brassica carinata HOM05D003234 ORTHO05D003635 2.0e-07 59.3 107 41.1
BcaC05g25956 Brassica carinata HOM05D003234 ORTHO05D003635 2.0e-07 59.3 107 41.1
A06p16500 Brassica napus HOM05D003234 ORTHO05D003635 2.0e-07 59.3 107 41.1
C05p19050 Brassica napus HOM05D003234 ORTHO05D003635 2.0e-07 59.3 107 41.1
BraA06t24756Z Brassica rapa HOM05D003234 ORTHO05D003635 2.0e-07 59.3 107 41.1
Manes.05G140300 Manihot esculenta HOM05D003234 ORTHO05D003635 2.0e-07 59.3 107 41.1
SGA_v2.0_scaffold19G08601 Striga asiatica HOM05D003234 ORTHO05D003635 2.0e-07 59.3 107 41.1
VMungo1309G2978 Vigna mungo HOM05D003234 ORTHO05D003635 2.0e-07 59.3 108 41.7
arahy.Tifrunner.gnm1.ann1.G2HAI2 Arachis hypogaea HOM05D003234 ORTHO05D003635 2.6e-07 58.9 108 40.7
Carub.0002s2308 Capsella rubella HOM05D003234 ORTHO05D003635 2.6e-07 58.9 107 40.2
Gorai.005G112900 Gossypium raimondii HOM05D003234 ORTHO05D003635 2.6e-07 58.9 107 40.2
Oeu011320.1 Olea europaea HOM05D003234 ORTHO05D003635 2.6e-07 58.9 107 41.1
Solyc04g082210.3 Solanum lycopersicum HOM05D003234 ORTHO05D003635 2.6e-07 58.9 109 42.2
PGSC0003DMG401009896 Solanum tuberosum HOM05D003234 ORTHO05D003635 2.6e-07 58.9 109 41.3
CiPaw.07G140700 Carya illinoinensis HOM05D003234 ORTHO05D003635 3.4e-07 58.5 107 39.3
GSVIVG01008697001 Vitis vinifera HOM05D003234 ORTHO05D003635 3.4e-07 58.5 107 41.1
Nn6g31830 Nelumbo nucifera HOM05D003234 ORTHO05D003635 4.5e-07 58.2 108 39.8
Nitab4.5_0002710g0120 Nicotiana tabacum HOM05D003234 ORTHO05D003635 4.5e-07 58.2 109 40.4
arahy.Tifrunner.gnm1.ann1.VFC9DI Arachis hypogaea HOM05D003234 ORTHO05D003635 7.6e-07 57.4 107 39.3
CiPaw.08G071600 Carya illinoinensis HOM05D003234 ORTHO05D003635 7.6e-07 57.4 108 38.9
vmacro04393 Vaccinium macrocarpon HOM05D003234 ORTHO05D003635 7.6e-07 57.4 107 40.2
A02p20490 Brassica napus HOM05D003234 ORTHO05D003635 9.9e-07 57.0 108 38.9
C02p33350 Brassica napus HOM05D003234 ORTHO05D003635 9.9e-07 57.0 109 38.5
Cc10_g00860 Coffea canephora HOM05D003234 ORTHO05D003635 9.9e-07 57.0 107 39.3
Gohir.D05G256400 Gossypium hirsutum HOM05D003234 ORTHO05D003635 9.9e-07 57.0 107 38.3
C06p32180 Brassica napus HOM05D003234 ORTHO05D003635 1.3e-06 56.6 107 41.1
BraA07t30501Z Brassica rapa HOM05D003234 ORTHO05D003635 1.3e-06 56.6 106 40.6
Gorai.009G267900 Gossypium raimondii HOM05D003234 ORTHO05D003635 1.3e-06 56.6 107 38.3
Duzib041G0372 Durio zibethinus HOM05D003234 ORTHO05D003635 1.7e-06 56.2 107 38.3
Nitab4.5_0000337g0170 Nicotiana tabacum HOM05D003234 ORTHO05D003635 1.7e-06 56.2 109 39.4
Sc02g0009000 Simmondsia chinensis HOM05D003234 ORTHO05D003635 1.7e-06 56.2 107 39.3
EL10Ac1g02011 Beta vulgaris HOM05D003234 ORTHO05D003635 2.2e-06 55.8 106 35.8
Gohir.A05G254800 Gossypium hirsutum HOM05D003234 ORTHO05D003635 2.2e-06 55.8 107 37.4
Eucgr.F03542 Eucalyptus grandis HOM05D003234 ORTHO05D003635 2.9e-06 55.5 107 40.2
SalBow6G3231 Salvia bowleyana HOM05D003234 ORTHO05D003635 2.9e-06 55.5 107 39.3
unitig_744.g24608 Utricularia gibba HOM05D003234 ORTHO05D003635 2.9e-06 55.5 110 41.8
BcaC03g15650 Brassica carinata HOM05D003234 ORTHO05D003635 3.8e-06 55.1 111 36.9
A07p28600 Brassica napus HOM05D003234 ORTHO05D003635 3.8e-06 55.1 107 40.2
CAN.G311.99 Capsicum annuum HOM05D003234 ORTHO05D003635 3.8e-06 55.1 109 40.4
BraA02t07080Z Brassica rapa HOM05D003234 ORTHO05D003635 4.9e-06 54.7 109 37.6
HanXRQChr12g0366591 Helianthus annuus HOM05D003234 ORTHO05D003635 4.9e-06 54.7 107 39.3
Actinidia15481 Actinidia chinensis HOM05D003234 ORTHO05D003635 6.4e-06 54.3 106 37.7
Lalb_Chr19g0131711 Lupinus albus HOM05D003234 ORTHO05D003635 6.4e-06 54.3 107 40.2
MBI05_g27809_MAGBIO Magnolia biondii HOM05D003234 ORTHO05D003635 6.4e-06 54.3 107 40.2
QL02p013773 Quercus lobata HOM05D003234 ORTHO05D003635 6.4e-06 54.3 130 33.8
Lalb_Chr08g0246351 Lupinus albus HOM05D003234 ORTHO05D003635 8.4e-06 53.9 126 35.7
Lalb_Chr11g0061721 Lupinus albus HOM05D003234 ORTHO05D003635 8.4e-06 53.9 114 36.0


User provided reference genes

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