Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3495 Trifolium pratense HOM05D004094 ORTHO05D004601 5.6e-71 270.8 131 100.0
TPR.G23323 Trifolium pratense HOM05D004094 ORTHO05D004601 1.6e-41 172.9 92 94.6
TPR.G11472 Trifolium pratense HOM05D004094 ORTHO05D004601 1.9e-39 166.0 89 93.3
TPR.G25784 Trifolium pratense HOM05D004094 ORTHO05D004601 1.1e-26 123.6 82 78.0
Psat6g041960 Pisum sativum HOM05D004094 ORTHO05D004601 1.6e-22 109.8 68 75.0
Medtr1g030410 Medicago truncatula HOM05D004094 ORTHO05D004601 8.1e-22 107.5 65 76.9
Ca_12613_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 6.9e-21 104.4 65 76.9
Lalb_Chr04g0253401 Lupinus albus HOM05D004094 ORTHO05D004601 5.5e-18 94.7 65 73.8
Phvul.008G163600 Phaseolus vulgaris HOM05D004094 ORTHO05D004601 1.5e-15 86.7 82 54.9
Lj1g0018898 Lotus japonicus HOM05D004094 ORTHO05D004601 1.9e-15 86.3 64 64.1
arahy.Tifrunner.gnm1.ann1.1LZC07 Arachis hypogaea HOM05D004094 ORTHO05D004601 1.3e-14 83.6 71 57.7
Glyma.14G148700 Glycine max HOM05D004094 ORTHO05D004601 1.3e-14 83.6 65 63.1
Lalb_Chr23g0271001 Lupinus albus HOM05D004094 ORTHO05D004601 1.6e-14 83.2 65 60.0
Ca_15191_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 4.8e-14 81.6 83 49.4
arahy.Tifrunner.gnm1.ann1.WV2Q7U Arachis hypogaea HOM05D004094 ORTHO05D004601 1.4e-13 80.1 72 55.6
Ca_14821_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 1.8e-13 79.7 83 47.0
Lj1g0022360 Lotus japonicus HOM05D004094 ORTHO05D004601 2.4e-13 79.3 70 55.7
arahy.Tifrunner.gnm1.ann1.HK9WB5 Arachis hypogaea HOM05D004094 ORTHO05D004601 3.1e-13 79.0 62 61.3
Cfa016008 Carpinus fangiana HOM05D004094 ORTHO05D004601 3.1e-13 79.0 63 55.6
Haze_00454 Corylus avellana HOM05D004094 ORTHO05D004601 6.9e-13 77.8 63 54.0
Glyma.06G112600 Glycine max HOM05D004094 ORTHO05D004601 6.9e-13 77.8 83 50.6
Psat5g131960 Pisum sativum HOM05D004094 ORTHO05D004601 6.9e-13 77.8 83 49.4
arahy.Tifrunner.gnm1.ann1.3295S8 Arachis hypogaea HOM05D004094 ORTHO05D004601 9.0e-13 77.4 58 63.8
TAR625G0515 Trochodendron aralioides HOM05D004094 ORTHO05D004601 1.5e-12 76.6 62 51.6
Duzib093G2002 Durio zibethinus HOM05D004094 ORTHO05D004601 2.6e-12 75.9 65 56.9
CiPaw.05G222800 Carya illinoinensis HOM05D004094 ORTHO05D004601 5.9e-12 74.7 62 54.8
Medtr3g072400 Medicago truncatula HOM05D004094 ORTHO05D004601 7.6e-12 74.3 82 47.6
Psat1g217360 Pisum sativum HOM05D004094 ORTHO05D004601 1.0e-11 73.9 83 45.8
Hma1.2p1_0186F.1_g081720 Hydrangea macrophylla HOM05D004094 ORTHO05D004601 1.3e-11 73.6 53 56.6
Phvul.009G124500 Phaseolus vulgaris HOM05D004094 ORTHO05D004601 1.3e-11 73.6 63 58.7
VMungo0647G0510 Vigna mungo HOM05D004094 ORTHO05D004601 1.3e-11 73.6 58 60.3
QL09p035258 Quercus lobata HOM05D004094 ORTHO05D004601 1.7e-11 73.2 63 52.4
TPR.G24027 Trifolium pratense HOM05D004094 ORTHO05D004601 2.2e-11 72.8 78 48.7
Glyma.04G250200 Glycine max HOM05D004094 ORTHO05D004601 2.9e-11 72.4 82 48.8
Thecc.08G123800 Theobroma cacao HOM05D004094 ORTHO05D004601 3.8e-11 72.0 63 50.8
VMungo1309G1727 Vigna mungo HOM05D004094 ORTHO05D004601 5.0e-11 71.6 65 53.8
GSVIVG01008880001 Vitis vinifera HOM05D004094 ORTHO05D004601 5.0e-11 71.6 68 51.5
Nn1g08759 Nelumbo nucifera HOM05D004094 ORTHO05D004601 7.2e-10 67.8 60 55.0
Prupe.1G499900 Prunus persica HOM05D004094 ORTHO05D004601 2.1e-09 66.2 63 46.0
FAN15G0810 Fragaria x ananassa HOM05D004094 ORTHO05D004601 2.7e-09 65.9 57 50.9
FAN20G0223 Fragaria x ananassa HOM05D004094 ORTHO05D004601 2.7e-09 65.9 57 50.9
FAN24G0267 Fragaria x ananassa HOM05D004094 ORTHO05D004601 2.7e-09 65.9 57 50.9
Gohir.D06G044700 Gossypium hirsutum HOM05D004094 ORTHO05D004601 3.5e-09 65.5 61 49.2
Gorai.010G049800 Gossypium raimondii HOM05D004094 ORTHO05D004601 6.1e-09 64.7 61 47.5
RcHm_v2.0_Chr6g0295641 Rosa chinensis HOM05D004094 ORTHO05D004601 6.1e-09 64.7 76 42.1
MELO3C010472.2 Cucumis melo HOM05D004094 ORTHO05D004601 7.9e-09 64.3 59 52.5
Gohir.A06G043800 Gossypium hirsutum HOM05D004094 ORTHO05D004601 1.3e-08 63.5 61 45.9
Aqoxy6G00193 Aquilegia oxysepala HOM05D004094 ORTHO05D004601 1.8e-08 63.2 62 40.3
CSS0004297 Camellia sinensis var. sinensis HOM05D004094 ORTHO05D004601 1.8e-08 63.2 46 58.7
AUR62027887 Chenopodium quinoa HOM05D004094 ORTHO05D004601 1.8e-08 63.2 62 46.8
FvH4_2g26770 Fragaria vesca HOM05D004094 ORTHO05D004601 1.8e-08 63.2 47 55.3
ClCG11G015680 Citrullus lanatus HOM05D004094 ORTHO05D004601 2.3e-08 62.8 59 49.2
Oeu047946.1 Olea europaea HOM05D004094 ORTHO05D004601 2.3e-08 62.8 71 40.8
Potri.002G084700 Populus trichocarpa HOM05D004094 ORTHO05D004601 2.3e-08 62.8 56 46.4
Potri.005G177000 Populus trichocarpa HOM05D004094 ORTHO05D004601 2.3e-08 62.8 57 43.9
Cc00_g04280 Coffea canephora HOM05D004094 ORTHO05D004601 3.0e-08 62.4 58 46.6
FAN20G1705 Fragaria x ananassa HOM05D004094 ORTHO05D004601 3.0e-08 62.4 47 55.3
AUR62019047 Chenopodium quinoa HOM05D004094 ORTHO05D004601 5.1e-08 61.6 62 45.2
MD15G1351000 Malus domestica HOM05D004094 ORTHO05D004601 5.1e-08 61.6 70 42.9
Rhsim06G0104600 Rhododendron simsii HOM05D004094 ORTHO05D004601 6.7e-08 61.2 46 56.5
Sed0014690 Sechium edule HOM05D004094 ORTHO05D004601 6.7e-08 61.2 46 60.9
Ciclev10000067m.g Citrus clementina HOM05D004094 ORTHO05D004601 8.7e-08 60.8 62 46.8
Dinv07237 Davidia involucrata HOM05D004094 ORTHO05D004601 1.1e-07 60.5 50 52.0
Sed0015071 Sechium edule HOM05D004094 ORTHO05D004601 1.5e-07 60.1 60 50.0
Actinidia02613 Actinidia chinensis HOM05D004094 ORTHO05D004601 1.9e-07 59.7 61 47.5
CsaV3_4G028330 Cucumis sativus L. HOM05D004094 ORTHO05D004601 1.9e-07 59.7 48 56.2
SHI23041 Sapria himalayana HOM05D004094 ORTHO05D004601 1.9e-07 59.7 54 46.3
vmacro12538 Vaccinium macrocarpon HOM05D004094 ORTHO05D004601 1.9e-07 59.7 46 54.3
Sabra02G0066100 Salix brachista HOM05D004094 ORTHO05D004601 2.5e-07 59.3 56 46.4
Manes.02G162400 Manihot esculenta HOM05D004094 ORTHO05D004601 3.3e-07 58.9 50 50.0
Sc01g0001180 Simmondsia chinensis HOM05D004094 ORTHO05D004601 3.3e-07 58.9 52 53.8
TWI12G0492 Tripterygium wilfordii HOM05D004094 ORTHO05D004601 3.3e-07 58.9 52 48.1
ATR0684G176 Amborella trichopoda HOM05D004094 ORTHO05D004601 5.7e-07 58.2 52 40.4
Sc23g0000720 Simmondsia chinensis HOM05D004094 ORTHO05D004601 5.7e-07 58.2 62 41.9
Sabra05G0133600 Salix brachista HOM05D004094 ORTHO05D004601 1.6e-06 56.6 56 41.1
Cpa.g.sc36.56 Carica papaya HOM05D004094 ORTHO05D004601 2.2e-06 56.2 72 40.3
Nitab4.5_0004044g0030 Nicotiana tabacum HOM05D004094 ORTHO05D004601 3.7e-06 55.5 47 53.2
Peaxi162Scf00051g00911 Petunia axillaris HOM05D004094 ORTHO05D004601 4.8e-06 55.1 58 43.1
THA.LOC104800189 Tarenaya hassleriana HOM05D004094 ORTHO05D004601 8.2e-06 54.3 62 40.3


User provided reference genes

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