Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 5.6e-170 600.9 310 100.0
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 4.6e-148 528.1 310 87.7
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 4.4e-143 511.5 310 84.5
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 6.2e-137 491.1 311 84.2
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 3.9e-123 445.3 310 76.1
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 6.7e-123 444.5 310 74.5
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 1.5e-122 443.4 310 75.8
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 7.4e-122 441.0 313 76.0
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 6.9e-120 434.5 311 73.0
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 3.4e-119 432.2 310 74.2
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 2.7e-116 422.5 310 74.8
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 1.0e-115 420.6 311 70.4
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 1.1e-114 417.2 310 73.9
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 6.7e-99 364.8 314 62.4
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 1.5e-98 363.6 303 62.4
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 9.7e-98 360.9 310 63.2
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 8.2e-97 357.8 306 63.4
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 4.1e-96 355.5 315 61.6
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 3.4e-95 352.4 340 57.9
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 1.0e-94 350.9 340 57.6
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 1.0e-94 350.9 302 60.9
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 2.2e-94 349.7 316 63.6
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 9.4e-93 344.4 303 59.7
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 9.4e-93 344.4 303 59.7
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 1.6e-92 343.6 325 60.6
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 1.0e-91 340.9 310 60.6
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 3.0e-91 339.3 312 57.1
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 6.7e-91 338.2 313 63.3
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 2.0e-90 336.7 310 60.0
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.0e-90 336.7 313 62.9
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 3.3e-90 335.9 310 56.5
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 4.4e-90 335.5 313 56.9
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 1.3e-89 334.0 303 58.4
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 3.7e-89 332.4 325 59.4
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.8e-89 332.0 313 62.3
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 8.2e-89 331.3 308 59.1
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 1.1e-88 330.9 308 59.7
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 1.4e-88 330.5 312 58.7
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 4.1e-88 328.9 311 58.8
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 5.3e-88 328.6 327 56.6
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 6.9e-88 328.2 314 62.1
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 6.9e-88 328.2 314 58.6
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 6.9e-88 328.2 316 58.9
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 1.5e-87 327.0 327 56.3
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 2.0e-87 326.6 314 58.6
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 2.0e-87 326.6 312 57.7
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 2.6e-87 326.2 328 57.0
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 3.4e-87 325.9 312 58.3
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 4.5e-87 325.5 327 56.0
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 2.9e-86 322.8 325 57.8
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 2.5e-85 319.7 306 58.5
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 2.1e-84 316.6 331 56.2
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 3.6e-84 315.8 329 55.6
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 6.1e-84 315.1 315 58.4
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 2.3e-83 313.2 314 56.1
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 5.2e-83 312.0 289 60.6
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 1.1e-82 310.8 307 56.7
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 2.8e-81 306.2 305 52.8
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 4.8e-81 305.4 315 55.6
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 8.2e-81 304.7 306 57.2
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 1.4e-80 303.9 308 56.2
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 4.1e-80 302.4 311 55.6
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 4.1e-80 302.4 306 55.9
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 2.0e-79 300.1 315 55.6
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 7.7e-79 298.1 312 55.8
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 1.0e-78 297.7 298 53.7
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 2.9e-78 296.2 315 55.2
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 9.4e-77 291.2 313 54.0
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 1.6e-76 290.4 311 54.3
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 1.6e-76 290.4 325 52.6
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 2.1e-76 290.0 314 54.8
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 6.1e-76 288.5 313 54.0
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 1.0e-75 287.7 317 53.9
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 2.0e-74 283.5 312 53.2
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 2.2e-73 280.0 318 53.1
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 4.8e-73 278.9 311 52.4
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 1.1e-72 277.7 299 55.2
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 3.1e-72 276.2 315 52.7
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 4.1e-72 275.8 259 57.5
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 7.0e-72 275.0 309 53.1
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 9.1e-72 274.6 310 52.3
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 3.8e-70 269.2 316 49.7
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 3.2e-69 266.2 315 51.7
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 2.1e-68 263.5 274 54.7
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 5.2e-67 258.8 306 50.0
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 6.8e-67 258.5 257 60.7
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 1.6e-63 247.3 316 48.7
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 1.3e-62 244.2 323 51.1
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 2.3e-62 243.4 315 50.2
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 3.8e-62 242.7 321 52.0
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 3.8e-62 242.7 321 50.2
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 5.0e-62 242.3 321 52.0
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.1e-61 241.1 321 49.5
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 1.9e-61 240.4 399 39.8
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 2.5e-61 240.0 317 48.3
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 2.5e-61 240.0 320 47.2
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 3.3e-61 239.6 317 48.6
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 1.2e-60 237.7 320 50.9
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 2.8e-60 236.5 321 51.4
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 2.8e-60 236.5 321 51.4
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 6.1e-60 235.3 336 48.2
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 8.0e-60 235.0 239 54.8
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 1.0e-59 234.6 306 47.4
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 1.0e-59 234.6 337 50.1
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.3e-59 233.4 325 48.0
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 3.0e-59 233.0 321 48.9
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 6.8e-59 231.9 310 48.1
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 8.3e-57 224.9 317 47.9
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 2.7e-55 219.9 310 43.2
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 2.9e-54 216.5 291 48.8
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 3.8e-54 216.1 270 47.8
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 2.8e-52 209.9 314 41.7
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 1.7e-49 200.7 306 43.1
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 5.6e-45 185.7 201 53.7
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.8e-44 183.3 144 62.5
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 6.2e-44 182.2 323 41.5
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 3.4e-42 176.4 310 41.3
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 7.5e-42 175.3 305 41.0
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 9.8e-42 174.9 359 38.2
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 2.4e-40 170.2 227 48.9
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 3.9e-38 162.9 184 51.6
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 2.5e-37 160.2 191 50.8
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 1.1e-35 154.8 184 50.0
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 6.8e-35 152.1 245 45.3
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 8.9e-35 151.8 147 55.8
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 7.5e-34 148.7 186 47.3
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 1.7e-33 147.5 159 49.7
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 2.2e-33 147.1 115 61.7
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 3.7e-33 146.4 177 49.7
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 3.7e-33 146.4 115 61.7
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 6.4e-33 145.6 289 38.8
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 2.4e-32 143.7 158 48.7
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 1.2e-31 141.4 168 50.0
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 1.0e-30 138.3 103 67.0
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 3.9e-30 136.3 173 48.6
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 5.1e-30 136.0 173 48.6
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 1.9e-29 134.0 115 59.1
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 2.1e-28 130.6 184 46.7
SEGI_17127 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 6.2e-28 129.0 130 55.4
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 1.1e-27 128.3 294 38.8
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 1.4e-27 127.9 294 38.4
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 3.1e-27 126.7 294 38.4
CAN.G697.2 Capsicum annuum HOM05D004212 ORTHO05D005128 1.3e-25 121.3 118 58.5
Duzib106G0220 Durio zibethinus HOM05D004212 ORTHO05D005128 1.7e-25 120.9 106 60.4
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 1.2e-23 114.8 131 49.6
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 3.5e-23 113.2 244 36.9
AagrBONN_evm.TU.Sc2ySwM_344.2315 Anthoceros agrestis HOM05D004212 ORTHO05D005128 1.7e-17 94.4 190 40.0
Lalb_Chr18g0052541 Lupinus albus HOM05D004212 ORTHO05D005128 2.3e-14 84.0 57 71.9
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 1.9e-13 80.9 76 51.3
BolC6t39520H Brassica oleracea HOM05D004212 ORTHO05D005128 7.3e-13 79.0 103 45.6
SGA_v2.0_scaffold96G28918 Striga asiatica HOM05D004212 ORTHO05D005128 2.8e-12 77.0 85 55.3
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 1.4e-11 74.7 277 26.7
BcaC01g05774 Brassica carinata HOM05D004212 ORTHO05D005128 2.9e-09 67.0 55 58.2
FAN02G2124 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.4e-08 63.9 136 42.6
MCO11G019 Micromonas commoda HOM05D004212 ORTHO05D005128 3.9e-06 56.6 87 41.4
CARHR164030 Cardamine hirsuta HOM05D004212 ORTHO05D005128 6.7e-06 55.8 57 50.9


User provided reference genes

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