Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3492 Trifolium pratense HOM05D002536 ORTHO05D006290 4.5e-58 227.6 108 100.0
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 1.3e-44 183.0 104 84.6
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 4.8e-44 181.0 104 81.7
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 5.8e-42 174.1 104 78.8
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 2.2e-41 172.2 103 76.7
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 1.9e-40 169.1 103 75.7
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 3.2e-40 168.3 103 76.7
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 5.5e-40 167.5 104 76.0
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 9.3e-40 166.8 103 74.8
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 9.3e-40 166.8 103 76.7
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 4.6e-39 164.5 101 74.3
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 4.6e-39 164.5 101 74.3
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 2.5e-37 158.7 104 72.1
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 7.4e-37 157.1 104 70.2
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 4.8e-36 154.5 104 69.2
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 1.8e-35 152.5 104 65.4
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 2.4e-35 152.1 104 69.2
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.4e-35 152.1 104 68.3
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 3.1e-35 151.8 104 70.2
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 5.3e-35 151.0 103 68.9
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 9.0e-35 150.2 102 67.6
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.2e-34 149.8 104 67.3
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.2e-34 149.8 104 67.3
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 1.5e-34 149.4 104 67.3
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 1.5e-34 149.4 104 67.3
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 2.0e-34 149.1 104 65.4
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 2.6e-34 148.7 103 66.0
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 3.4e-34 148.3 104 65.4
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 4.5e-34 147.9 103 68.9
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 4.5e-34 147.9 104 62.5
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 5.9e-34 147.5 104 68.3
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 1.3e-33 146.4 104 63.5
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 2.2e-33 145.6 104 65.4
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 2.2e-33 145.6 104 65.4
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 2.9e-33 145.2 104 62.5
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 3.8e-33 144.8 104 64.4
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 5.0e-33 144.4 104 63.5
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 5.0e-33 144.4 104 64.4
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 6.5e-33 144.1 104 63.5
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 8.5e-33 143.7 104 65.4
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 8.5e-33 143.7 103 62.1
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 1.1e-32 143.3 103 65.0
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 1.1e-32 143.3 103 65.0
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 1.1e-32 143.3 104 63.5
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 1.4e-32 142.9 104 63.5
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 2.5e-32 142.1 104 62.5
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 2.5e-32 142.1 104 62.5
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 3.2e-32 141.7 104 62.5
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 3.2e-32 141.7 104 64.4
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 4.2e-32 141.4 104 60.6
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 5.5e-32 141.0 104 59.6
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 5.5e-32 141.0 104 60.6
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 5.5e-32 141.0 104 60.6
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 7.2e-32 140.6 104 61.5
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 7.2e-32 140.6 104 60.6
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 7.2e-32 140.6 100 61.0
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 1.2e-31 139.8 104 57.7
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 1.2e-31 139.8 104 58.7
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 1.2e-31 139.8 104 62.5
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 1.2e-31 139.8 104 60.6
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 1.6e-31 139.4 103 62.1
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 1.6e-31 139.4 104 61.5
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 2.1e-31 139.0 104 61.5
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 2.1e-31 139.0 104 63.5
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 2.1e-31 139.0 104 63.5
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 2.1e-31 139.0 104 59.6
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 3.6e-31 138.3 104 62.5
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 1.0e-30 136.7 104 60.6
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.0e-30 136.7 104 62.5
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 1.0e-30 136.7 104 60.6
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 1.0e-30 136.7 104 59.6
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 1.4e-30 136.3 104 59.6
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 1.8e-30 136.0 104 62.5
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 5.1e-30 134.4 103 62.1
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 6.7e-30 134.0 104 55.8
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 6.7e-30 134.0 101 60.4
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 1.1e-29 133.3 104 56.7
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 1.5e-29 132.9 104 56.7
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 3.3e-29 131.7 95 62.1
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 3.3e-29 131.7 104 61.5
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 3.3e-29 131.7 104 55.8
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 7.4e-29 130.6 104 56.7
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 9.7e-29 130.2 85 69.4
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 8.2e-28 127.1 124 53.2
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 1.1e-27 126.7 103 57.3
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 2.4e-27 125.6 104 55.8
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 2.0e-26 122.5 94 58.5
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 5.9e-26 120.9 101 54.5
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 1.3e-25 119.8 105 54.3
TPR.G15212 Trifolium pratense HOM05D002536 ORTHO05D006290 2.9e-25 118.6 71 80.3
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 5.0e-25 117.9 155 41.9
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 5.0e-25 117.9 85 67.1
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 5.0e-25 117.9 145 44.8
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 1.1e-24 116.7 95 58.9
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 1.9e-24 115.9 81 66.7
TPR.G4379 Trifolium pratense HOM05D002536 ORTHO05D006290 2.5e-24 115.5 133 50.4
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 1.6e-23 112.8 83 62.7
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 5.3e-19 97.8 84 54.8
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 1.0e-17 93.6 94 48.9
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 2.5e-16 89.0 91 45.1
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 3.2e-16 88.6 91 42.9
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 9.4e-16 87.0 107 40.2
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 2.1e-15 85.9 42 90.5
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 3.3e-13 78.6 66 57.6
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 2.0e-10 69.3 87 42.5
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 6.5e-09 64.3 70 38.6
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 1.1e-08 63.5 100 37.0
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 3.6e-07 58.5 70 35.7
SEGI_34356 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 1.4e-06 56.6 39 64.1


User provided reference genes

Program Settings