Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34914 Trifolium pratense HOM05D001491 ORTHO05D001443 2.5e-33 144.8 71 100.0
TPR.G24753 Trifolium pratense HOM05D001491 ORTHO05D001443 3.6e-32 141.0 71 97.2
Medtr6g488090 Medicago truncatula HOM05D001491 ORTHO05D001443 8.9e-31 136.3 71 93.0
Medtr6g488030 Medicago truncatula HOM05D001491 ORTHO05D001443 1.2e-30 136.0 71 93.0
TPR.G24752 Trifolium pratense HOM05D001491 ORTHO05D001443 2.4e-28 128.3 71 90.1
Ca_25546_v3 Cicer arietinum L. HOM05D001491 ORTHO05D001443 1.0e-26 122.9 71 87.3
Medtr6g488050 Medicago truncatula HOM05D001491 ORTHO05D001443 3.9e-26 120.9 73 82.2
Psat1g044200 Pisum sativum HOM05D001491 ORTHO05D001443 1.1e-23 112.8 71 77.5
Glyma.07G083700 Glycine max HOM05D001491 ORTHO05D001443 4.0e-23 110.9 71 76.1
Lj2g0007755 Lotus japonicus HOM05D001491 ORTHO05D001443 1.2e-22 109.4 71 77.5
Glyma.07G083900 Glycine max HOM05D001491 ORTHO05D001443 7.5e-22 106.7 68 72.1
TPR.G27885 Trifolium pratense HOM05D001491 ORTHO05D001443 4.9e-21 104.0 67 79.1
TPR.G7243 Trifolium pratense HOM05D001491 ORTHO05D001443 1.5e-17 92.4 72 65.3
VMungo0464G1267 Vigna mungo HOM05D001491 ORTHO05D001443 2.8e-16 88.2 68 61.8
Prupe.7G225900 Prunus persica HOM05D001491 ORTHO05D001443 1.1e-15 86.3 71 59.2
Lalb_Chr24g0397451 Lupinus albus HOM05D001491 ORTHO05D001443 1.5e-14 82.4 68 58.8
MD15G1191300 Malus domestica HOM05D001491 ORTHO05D001443 5.8e-14 80.5 71 56.3
arahy.Tifrunner.gnm1.ann1.AXGS4F Arachis hypogaea HOM05D001491 ORTHO05D001443 9.9e-14 79.7 57 64.9
arahy.Tifrunner.gnm1.ann1.YMUB8G Arachis hypogaea HOM05D001491 ORTHO05D001443 6.4e-13 77.0 57 63.2
Manes.16G113100 Manihot esculenta HOM05D001491 ORTHO05D001443 1.4e-12 75.9 72 56.9
Gohir.A07G005000 Gossypium hirsutum HOM05D001491 ORTHO05D001443 1.9e-12 75.5 69 53.6
Cc06_g10020 Coffea canephora HOM05D001491 ORTHO05D001443 2.4e-12 75.1 71 50.7
MBI01_g30866_MAGBIO Magnolia biondii HOM05D001491 ORTHO05D001443 2.4e-12 75.1 71 46.5
Oeu015586.1 Olea europaea HOM05D001491 ORTHO05D001443 2.4e-12 75.1 73 56.2
Oeu015587.1 Olea europaea HOM05D001491 ORTHO05D001443 4.1e-12 74.3 64 57.8
Dinv36665 Davidia involucrata HOM05D001491 ORTHO05D001443 5.4e-12 73.9 68 51.5
Eucgr.C03808 Eucalyptus grandis HOM05D001491 ORTHO05D001443 7.1e-12 73.6 66 47.0
Gohir.D07G007100 Gossypium hirsutum HOM05D001491 ORTHO05D001443 7.1e-12 73.6 69 52.2
Gorai.001G006700 Gossypium raimondii HOM05D001491 ORTHO05D001443 7.1e-12 73.6 69 52.2
Thecc.09G106200 Theobroma cacao HOM05D001491 ORTHO05D001443 1.6e-11 72.4 68 50.0
Atru.chr7.1379 Acer truncatum HOM05D001491 ORTHO05D001443 2.1e-11 72.0 68 54.4
Nn2g11667 Nelumbo nucifera HOM05D001491 ORTHO05D001443 2.1e-11 72.0 68 50.0
Potri.006G161538 Populus trichocarpa HOM05D001491 ORTHO05D001443 2.1e-11 72.0 68 50.0
COL.COLO4_34814 Corchorus olitorius HOM05D001491 ORTHO05D001443 2.7e-11 71.6 69 50.7
TAR383G0535 Trochodendron aralioides HOM05D001491 ORTHO05D001443 2.7e-11 71.6 71 47.9
GSVIVG01015354001 Vitis vinifera HOM05D001491 ORTHO05D001443 2.7e-11 71.6 52 57.7
CiPaw.03G228500 Carya illinoinensis HOM05D001491 ORTHO05D001443 3.5e-11 71.2 72 52.8
RcHm_v2.0_Chr2g0091231 Rosa chinensis HOM05D001491 ORTHO05D001443 4.6e-11 70.9 69 49.3
CiPaw.04G161900 Carya illinoinensis HOM05D001491 ORTHO05D001443 6.0e-11 70.5 69 49.3
Haze_25779 Corylus avellana HOM05D001491 ORTHO05D001443 7.8e-11 70.1 69 49.3
Duzib168G1739 Durio zibethinus HOM05D001491 ORTHO05D001443 7.8e-11 70.1 69 49.3
FAN23G1639 Fragaria x ananassa HOM05D001491 ORTHO05D004187 1.0e-10 69.7 71 47.9
Oeu064909.1 Olea europaea HOM05D001491 ORTHO05D001443 1.0e-10 69.7 64 51.6
Sabra06G0127000 Salix brachista HOM05D001491 ORTHO05D001443 1.0e-10 69.7 68 52.9
Actinidia32671 Actinidia chinensis HOM05D001491 ORTHO05D001443 1.3e-10 69.3 72 50.0
QL02p022439 Quercus lobata HOM05D001491 ORTHO05D001443 1.3e-10 69.3 68 50.0
RcHm_v2.0_Chr6g0259271 Rosa chinensis HOM05D001491 ORTHO05D001443 2.3e-10 68.6 71 47.9
FvH4_1g05530 Fragaria vesca HOM05D001491 ORTHO05D001443 3.0e-10 68.2 71 49.3
FAN19G1100 Fragaria x ananassa HOM05D001491 ORTHO05D001443 3.0e-10 68.2 71 49.3
FAN26G3114 Fragaria x ananassa HOM05D001491 ORTHO05D001443 6.6e-10 67.0 71 46.5
ClCG06G008810 Citrullus lanatus HOM05D001491 ORTHO05D001443 8.6e-10 66.6 71 45.1
ClCG06G008820 Citrullus lanatus HOM05D001491 ORTHO05D001443 8.6e-10 66.6 71 45.1
DCAR_028692 Daucus carota HOM05D001491 ORTHO05D001443 1.1e-09 66.2 71 46.5
TAR383G0677 Trochodendron aralioides HOM05D001491 ORTHO05D001443 1.1e-09 66.2 72 48.6
Aqoxy7G01567 Aquilegia oxysepala HOM05D001491 ORTHO05D001443 1.5e-09 65.9 67 47.8
Lj7A656G63 Lonicera japonica HOM05D001491 ORTHO05D001443 1.9e-09 65.5 43 62.8
ATR0315G051 Amborella trichopoda HOM05D001491 ORTHO05D001443 3.3e-09 64.7 69 42.0
FAN28G2105 Fragaria x ananassa HOM05D001491 ORTHO05D001443 3.3e-09 64.7 68 45.6
MBI04_g05260_MAGBIO Magnolia biondii HOM05D001491 ORTHO05D001443 3.3e-09 64.7 68 45.6
vmacro06231 Vaccinium macrocarpon HOM05D001491 ORTHO05D001443 3.3e-09 64.7 61 52.5
Carub.0007s1168 Capsella rubella HOM05D001491 ORTHO05D001443 5.6e-09 63.9 70 50.0
THA.LOC104814557 Tarenaya hassleriana HOM05D001491 ORTHO05D001443 5.6e-09 63.9 68 51.5
MELO3C024695.2 Cucumis melo HOM05D001491 ORTHO05D001443 7.3e-09 63.5 69 46.4
Eucgr.C01272 Eucalyptus grandis HOM05D001491 ORTHO05D001443 9.5e-09 63.2 60 51.7
Eucgr.L02649 Eucalyptus grandis HOM05D001491 ORTHO05D001443 9.5e-09 63.2 60 51.7
Rhsim03G0239700 Rhododendron simsii HOM05D001491 ORTHO05D001443 9.5e-09 63.2 52 55.8
Sp7g26890 Schrenkiella parvula HOM05D001491 ORTHO05D001443 9.5e-09 63.2 71 47.9
vmacro00632 Vaccinium macrocarpon HOM05D001491 ORTHO05D001443 9.5e-09 63.2 61 50.8
CsaV3_1G045800 Cucumis sativus L. HOM05D001491 ORTHO05D001443 1.2e-08 62.8 68 41.2
Thhalv10025609m.g Eutrema salsugineum HOM05D001491 ORTHO05D001443 1.2e-08 62.8 72 47.2
BcaNung02894 Brassica carinata HOM05D001491 ORTHO05D001443 1.6e-08 62.4 72 48.6
C07p56550 Brassica napus HOM05D001491 ORTHO05D001443 1.6e-08 62.4 72 48.6
BolC7t46133H Brassica oleracea HOM05D001491 ORTHO05D001443 1.6e-08 62.4 72 48.6
CiPaw.08G024900 Carya illinoinensis HOM05D001491 ORTHO05D001443 1.6e-08 62.4 67 44.8
A03p58540 Brassica napus HOM05D001491 ORTHO05D001443 2.8e-08 61.6 68 45.6
A03p58600 Brassica napus HOM05D001491 ORTHO05D001443 2.8e-08 61.6 68 45.6
BraA01t00850Z Brassica rapa HOM05D001491 ORTHO05D001443 2.8e-08 61.6 72 45.8
BraA03t14914Z Brassica rapa HOM05D001491 ORTHO05D001443 2.8e-08 61.6 68 45.6
BraA03t14920Z Brassica rapa HOM05D001491 ORTHO05D001443 2.8e-08 61.6 68 45.6
Sed0015938 Sechium edule HOM05D001491 ORTHO05D001443 2.8e-08 61.6 69 44.9
BcaNung00437 Brassica carinata HOM05D001491 ORTHO05D001443 3.6e-08 61.2 72 48.6
CiPaw.08G024800 Carya illinoinensis HOM05D001491 ORTHO05D001443 3.6e-08 61.2 65 44.6
CiPaw.08G025000 Carya illinoinensis HOM05D001491 ORTHO05D001443 3.6e-08 61.2 65 44.6
AL7G23500 Arabidopsis lyrata HOM05D001491 ORTHO05D001443 4.7e-08 60.8 70 48.6
BcaC09g51671 Brassica carinata HOM05D001491 ORTHO05D001443 4.7e-08 60.8 72 45.8
C01p10560 Brassica napus HOM05D001491 ORTHO05D001443 4.7e-08 60.8 72 45.8
BolC1t01019H Brassica oleracea HOM05D001491 ORTHO05D001443 4.7e-08 60.8 72 45.8
BcaNung01347 Brassica carinata HOM05D001491 ORTHO05D001443 8.1e-08 60.1 72 47.2
BcaNung01352 Brassica carinata HOM05D001491 ORTHO05D001443 8.1e-08 60.1 72 47.2
A01p09020 Brassica napus HOM05D001491 ORTHO05D001443 8.1e-08 60.1 72 44.4
AT4G28940 Arabidopsis thaliana HOM05D001491 ORTHO05D001443 1.1e-07 59.7 70 45.7
CDE05G3580 Ceratophyllum demersum HOM05D001491 ORTHO05D001443 1.1e-07 59.7 68 41.2
TWI63G1119 Tripterygium wilfordii HOM05D001491 ORTHO05D001443 1.1e-07 59.7 58 50.0
PGR142G3294 Punica granatum HOM05D001491 ORTHO05D001443 1.4e-07 59.3 46 60.9
BcaNung02897 Brassica carinata HOM05D001491 ORTHO05D001443 1.8e-07 58.9 72 47.2
C07p56540 Brassica napus HOM05D001491 ORTHO05D001443 1.8e-07 58.9 72 47.2
BolC7t46131H Brassica oleracea HOM05D001491 ORTHO05D001443 1.8e-07 58.9 72 47.2
Sp1g29010 Schrenkiella parvula HOM05D001491 ORTHO05D001443 1.8e-07 58.9 68 41.2
CARHR236690 Cardamine hirsuta HOM05D001491 ORTHO05D001443 3.1e-07 58.2 72 45.8
CDE05G0702 Ceratophyllum demersum HOM05D001491 ORTHO05D001443 3.1e-07 58.2 68 41.2
SalBow4G3117 Salvia bowleyana HOM05D001491 ORTHO05D001443 5.2e-07 57.4 60 46.7
Os05g0228000 Oryza sativa ssp. japonica HOM05D001491 ORTHO05D001443 6.8e-07 57.0 44 52.3
SalBow1G4091 Salvia bowleyana HOM05D001491 ORTHO05D001443 6.8e-07 57.0 59 47.5
Lj7A656G62 Lonicera japonica HOM05D001491 ORTHO05D001443 8.9e-07 56.6 44 56.8
VMungo0360G0001 Vigna mungo HOM05D001491 ORTHO05D437293 8.9e-07 56.6 39 61.5
CSS0021011 Camellia sinensis var. sinensis HOM05D001491 ORTHO05D001443 1.2e-06 56.2 68 44.1
CSS0038282 Camellia sinensis var. sinensis HOM05D001491 ORTHO05D001443 1.2e-06 56.2 68 44.1
FAN27G2520 Fragaria x ananassa HOM05D001491 ORTHO05D001443 1.2e-06 56.2 60 45.0
MD15G1095300 Malus domestica HOM05D001491 ORTHO05D001443 1.2e-06 56.2 60 40.0
SEGI_35757 Sequoiadendron giganteum HOM05D001491 ORTHO05D001443 1.2e-06 56.2 68 47.1
HanXRQChr10g0318731 Helianthus annuus HOM05D001491 ORTHO05D001443 1.5e-06 55.8 44 52.3
Eucgr.C01273 Eucalyptus grandis HOM05D001491 ORTHO05D001443 2.0e-06 55.5 66 39.4
Lsat_1_v5_gn_5_147860 Lactuca sativa HOM05D001491 ORTHO05D001443 2.0e-06 55.5 44 59.1
CSS0010925 Camellia sinensis var. sinensis HOM05D001491 ORTHO05D001443 3.4e-06 54.7 62 43.5
ECA234G4078 Erigeron canadensis HOM05D001491 ORTHO05D004187 3.4e-06 54.7 35 68.6
SEGI_21639 Sequoiadendron giganteum HOM05D001491 ORTHO05D001443 3.4e-06 54.7 73 39.7
FAN24G0002 Fragaria x ananassa HOM05D001491 ORTHO05D001443 4.4e-06 54.3 55 45.5
SEGI_04044 Sequoiadendron giganteum HOM05D001491 ORTHO05D001443 4.4e-06 54.3 69 39.1
Actinidia14669 Actinidia chinensis HOM05D001491 ORTHO05D001443 5.8e-06 53.9 59 45.8
CSS0012835 Camellia sinensis var. sinensis HOM05D001491 ORTHO05D001443 5.8e-06 53.9 59 42.4
CSS0031194 Camellia sinensis var. sinensis HOM05D001491 ORTHO05D001443 5.8e-06 53.9 59 42.4
arahy.Tifrunner.gnm1.ann1.8YLP1I Arachis hypogaea HOM05D001491 ORTHO05D001443 7.6e-06 53.5 69 40.6
Ca_15603_v3 Cicer arietinum L. HOM05D001491 ORTHO05D001443 7.6e-06 53.5 44 50.0
Psat5g022360 Pisum sativum HOM05D001491 ORTHO05D001443 7.6e-06 53.5 43 55.8
arahy.Tifrunner.gnm1.ann1.66BVBV Arachis hypogaea HOM05D001491 ORTHO05D001443 9.9e-06 53.1 69 40.6
arahy.Tifrunner.gnm1.ann1.TPCS2D Arachis hypogaea HOM05D001491 ORTHO05D001443 9.9e-06 53.1 69 40.6
Psat5g022400 Pisum sativum HOM05D001491 ORTHO05D001443 9.9e-06 53.1 44 50.0
QL12p029343 Quercus lobata HOM05D001491 ORTHO05D001443 9.9e-06 53.1 59 39.0
SEGI_27701 Sequoiadendron giganteum HOM05D001491 ORTHO05D001443 9.9e-06 53.1 42 50.0


User provided reference genes

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