Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 4.6e-138 494.6 252 100.0
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 3.0e-113 412.1 214 96.7
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 3.1e-110 402.1 214 93.5
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 9.6e-104 380.6 210 87.6
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 1.3e-103 380.2 211 88.6
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 2.8e-103 379.0 210 87.1
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 4.0e-102 375.2 212 88.2
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 1.5e-101 373.2 214 86.0
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 1.2e-98 363.6 210 83.8
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 2.5e-96 355.9 211 81.0
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 4.3e-96 355.1 211 80.1
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 5.6e-96 354.8 214 79.0
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 2.8e-95 352.4 214 80.4
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 3.7e-95 352.1 205 82.4
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 3.7e-95 352.1 209 80.4
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 3.7e-95 352.1 209 79.9
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 8.1e-95 350.9 214 79.9
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 1.1e-94 350.5 214 79.9
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 1.4e-94 350.1 207 81.6
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 1.8e-94 349.7 205 80.0
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 1.8e-94 349.7 208 80.8
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 1.8e-94 349.7 209 80.4
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 1.8e-94 349.7 212 79.2
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 3.1e-94 349.0 211 79.6
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 4.0e-94 348.6 214 79.4
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 4.0e-94 348.6 214 80.4
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 6.9e-94 347.8 205 80.5
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 9.0e-94 347.4 209 78.9
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 1.2e-93 347.1 214 78.5
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 1.5e-93 346.7 209 78.9
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 2.0e-93 346.3 209 79.4
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 2.6e-93 345.9 209 78.9
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 3.4e-93 345.5 209 79.9
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 7.6e-93 344.4 211 79.1
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 9.9e-93 344.0 209 78.0
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 9.9e-93 344.0 211 77.7
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 1.3e-92 343.6 209 78.5
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 1.7e-92 343.2 214 77.6
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 2.9e-92 342.4 207 79.2
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 3.8e-92 342.0 211 78.2
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 6.4e-92 341.3 209 78.5
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 6.4e-92 341.3 205 79.5
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 1.1e-91 340.5 211 77.3
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 1.1e-91 340.5 214 77.1
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 2.5e-91 339.3 209 77.5
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 3.2e-91 339.0 205 80.0
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 5.5e-91 338.2 212 76.4
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 5.5e-91 338.2 214 75.2
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 5.5e-91 338.2 209 78.5
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 1.2e-90 337.0 217 77.0
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 1.6e-90 336.7 207 77.3
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 1.6e-90 336.7 207 77.3
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 2.1e-90 336.3 208 77.9
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 2.1e-90 336.3 205 79.0
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 2.7e-90 335.9 208 76.4
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 2.7e-90 335.9 214 77.6
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 4.6e-90 335.1 208 76.0
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 4.6e-90 335.1 208 77.4
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 4.6e-90 335.1 208 77.4
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 4.6e-90 335.1 208 77.4
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 4.6e-90 335.1 205 77.1
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 6.0e-90 334.7 208 77.4
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 6.0e-90 334.7 208 76.4
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 6.0e-90 334.7 208 76.4
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 6.0e-90 334.7 208 76.0
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 6.0e-90 334.7 214 74.3
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 6.0e-90 334.7 219 74.0
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 7.9e-90 334.3 210 76.2
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 1.0e-89 334.0 206 78.2
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 1.0e-89 334.0 208 76.9
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 1.3e-89 333.6 205 78.5
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 1.8e-89 333.2 208 76.4
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 2.3e-89 332.8 208 76.9
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 2.3e-89 332.8 203 78.8
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 2.3e-89 332.8 205 77.6
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 5.1e-89 331.6 208 76.0
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 1.9e-88 329.7 235 68.5
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 2.5e-88 329.3 205 77.1
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 2.5e-88 329.3 208 76.4
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 1.6e-87 326.6 205 76.6
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 2.1e-87 326.2 205 78.0
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 2.6e-85 319.3 203 72.4
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 4.9e-84 315.1 208 73.6
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 6.5e-84 314.7 215 71.2
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 8.4e-84 314.3 209 70.8
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 1.4e-83 313.5 212 71.7
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 3.2e-83 312.4 186 79.6
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 9.3e-83 310.8 215 67.9
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 1.6e-82 310.1 210 71.9
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 4.6e-82 308.5 205 70.7
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 3.3e-80 302.4 211 69.2
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 9.7e-80 300.8 157 96.2
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 1.3e-79 300.4 213 70.4
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 1.1e-78 297.4 211 71.6
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 1.8e-78 296.6 207 67.6
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 4.5e-77 292.0 221 64.7
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 1.0e-76 290.8 203 66.5
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 7.2e-75 284.6 157 89.2
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 1.2e-74 283.9 178 78.7
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 2.1e-74 283.1 205 68.8
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 2.1e-74 283.1 178 74.7
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 2.0e-72 276.6 169 77.5
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 3.3e-72 275.8 192 71.9
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 6.3e-71 271.6 166 77.1
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 1.4e-70 270.4 203 63.5
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 1.4e-70 270.4 203 63.5
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 9.7e-64 247.7 258 51.9
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 2.6e-61 239.6 242 53.7
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 1.9e-59 233.4 157 73.2
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 9.4e-59 231.1 158 75.9
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 2.0e-56 223.4 220 50.5
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 2.2e-55 219.9 142 71.1
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 5.5e-51 205.3 208 50.0
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 2.0e-48 196.8 182 51.1
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 2.7e-45 186.4 130 69.2
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 2.7e-45 186.4 130 69.2
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 2.5e-43 179.9 142 62.0
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 5.2e-41 172.2 213 46.0
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 2.7e-37 159.8 223 39.9
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 2.7e-37 159.8 223 39.9
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 6.6e-36 155.2 95 78.9
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 4.4e-24 115.9 194 37.1
BcaC09g51665 Brassica carinata HOM05D006031 ORTHO05D007417 4.9e-23 112.5 89 64.0
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 4.6e-21 105.9 96 57.3
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 3.3e-19 99.8 65 69.2
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 3.1e-17 93.2 53 84.9
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 3.1e-17 93.2 52 86.5
Glyma.09G193200 Glycine max HOM05D006031 ORTHO05D007417 8.9e-17 91.7 73 64.4
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 1.4e-14 84.3 44 93.2
Zm00001eb271390 Zea mays HOM05D006031 ORTHO05D007417 7.1e-14 82.0 53 73.6
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 1.7e-12 77.4 50 78.0
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 3.0e-12 76.6 57 59.6
arahy.Tifrunner.gnm1.ann1.43H8SX Arachis hypogaea HOM05D000371 ORTHO05D013217 5.1e-12 75.9 53 71.7
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 2.1e-10 70.5 38 84.2
MBI06_g04307_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 2.3e-09 67.0 134 38.8
COL.COLO4_34793 Corchorus olitorius HOM05D006031 ORTHO05D007417 5.8e-08 62.4 33 84.8
Thhalv10002738m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 2.2e-07 60.5 39 71.8
Lsat_1_v5_gn_2_108580 Lactuca sativa HOM05D006031 ORTHO05D007417 2.9e-07 60.1 38 81.6
arahy.Tifrunner.gnm1.ann1.LJ4ZNG Arachis hypogaea HOM05D000371 ORTHO05D013217 2.4e-06 57.0 31 83.9
PGSC0003DMG400015828 Solanum tuberosum HOM05D000124 ORTHO05D397188 3.2e-06 56.6 36 66.7


User provided reference genes

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