Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34887 Trifolium pratense HOM05D000445 ORTHO05D000314 7.1e-44 180.3 94 100.0
RcHm_v2.0_CPg0501801 Rosa chinensis HOM05D000445 ORTHO05D000314 1.8e-15 85.9 63 76.2
RcHm_v2.0_CPg0502611 Rosa chinensis HOM05D000445 ORTHO05D000314 1.8e-15 85.9 63 76.2
RcHm_v2.0_Chr2g0118441 Rosa chinensis HOM05D000445 ORTHO05D000314 4.1e-15 84.7 63 76.2
ATR0258G003 Amborella trichopoda HOM05D000445 ORTHO05D000314 1.2e-14 83.2 63 76.2
Cfa015164 Carpinus fangiana HOM05D000445 ORTHO05D000314 1.2e-14 83.2 63 76.2
Gohir.A02G069301 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.2e-14 83.2 63 76.2
Gohir.A04G039060 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.2e-14 83.2 63 76.2
Medtr0689s0010 Medicago truncatula HOM05D000445 ORTHO05D000314 1.2e-14 83.2 63 76.2
PSO548G0004 Papaver somniferum HOM05D000445 ORTHO05D000314 1.2e-14 83.2 66 72.7
PSO548G0115 Papaver somniferum HOM05D000445 ORTHO05D000314 1.2e-14 83.2 66 72.7
Potri.013G143400 Populus trichocarpa HOM05D000445 ORTHO05D000314 1.2e-14 83.2 63 76.2
SabraPtG0004600 Salix brachista HOM05D000445 ORTHO05D000314 1.2e-14 83.2 63 76.2
SabraPtG0006900 Salix brachista HOM05D000445 ORTHO05D000314 1.2e-14 83.2 63 76.2
arahy.Tifrunner.gnm1.ann1.DY3820 Arachis hypogaea HOM05D000445 ORTHO05D010986 1.5e-14 82.8 63 76.2
arahy.Tifrunner.gnm1.ann1.U896IL Arachis hypogaea HOM05D000445 ORTHO05D000314 1.5e-14 82.8 63 76.2
arahy.Tifrunner.gnm1.ann1.Z1U5RE Arachis hypogaea HOM05D000445 ORTHO05D000314 1.5e-14 82.8 63 76.2
PGR111G0085 Punica granatum HOM05D000445 ORTHO05D000314 1.5e-14 82.8 64 73.4
PGR111G0100 Punica granatum HOM05D000445 ORTHO05D000314 1.5e-14 82.8 64 73.4
Gohir.D01G101865 Gossypium hirsutum HOM05D000445 ORTHO05D000314 2.0e-14 82.4 63 74.6
Lalb_Chr12g0206601 Lupinus albus HOM05D000445 ORTHO05D000314 3.4e-14 81.6 79 58.2
VMungo0942G0001 Vigna mungo HOM05D000445 ORTHO05D000314 3.4e-14 81.6 63 74.6
VMungo0976G0001 Vigna mungo HOM05D000445 ORTHO05D000314 3.4e-14 81.6 63 74.6
LjContig00318g0022366 Lotus japonicus HOM05D000445 ORTHO05D000314 5.9e-14 80.9 63 74.6
LjContig00319g0026737 Lotus japonicus HOM05D000445 ORTHO05D000314 5.9e-14 80.9 63 74.6
Atru.chr9.779 Acer truncatum HOM05D000445 ORTHO05D000725 7.7e-14 80.5 63 74.6
Lalb_Chr01g0014981 Lupinus albus HOM05D000445 ORTHO05D000314 7.7e-14 80.5 82 59.8
Medtr4g051435 Medicago truncatula HOM05D000445 ORTHO05D000314 7.7e-14 80.5 63 74.6
Medtr8g024820 Medicago truncatula HOM05D000445 ORTHO05D000314 7.7e-14 80.5 63 74.6
Nn233s45563 Nelumbo nucifera HOM05D000445 ORTHO05D000314 7.7e-14 80.5 66 69.7
Nn269s46007 Nelumbo nucifera HOM05D000445 ORTHO05D000314 7.7e-14 80.5 66 69.7
AL2G21840 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 1.0e-13 80.1 62 72.6
ATCG00860 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 1.0e-13 80.1 62 72.6
ATCG01280 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 1.0e-13 80.1 62 72.6
CARHR282560 Cardamine hirsuta HOM05D000445 ORTHO05D000314 1.0e-13 80.1 62 72.6
Thhalv10001808m.g Eutrema salsugineum HOM05D000445 ORTHO05D000314 1.0e-13 80.1 62 72.6
Lj4g0020232 Lotus japonicus HOM05D000445 ORTHO05D000314 1.0e-13 80.1 63 73.0
Sed0003894 Sechium edule HOM05D000445 ORTHO05D000314 1.3e-13 79.7 63 74.6
Sed0005242 Sechium edule HOM05D000445 ORTHO05D000314 1.3e-13 79.7 63 74.6
Sed0006678 Sechium edule HOM05D000445 ORTHO05D000314 1.3e-13 79.7 63 74.6
Sed0022464 Sechium edule HOM05D000445 ORTHO05D000314 1.3e-13 79.7 63 74.6
Lalb_Chr07g0191931 Lupinus albus HOM05D000445 ORTHO05D000314 3.8e-13 78.2 63 71.4
Sc05g0004090 Simmondsia chinensis HOM05D000445 ORTHO05D000314 3.8e-13 78.2 63 74.6
Sc25g0001980 Simmondsia chinensis HOM05D000445 ORTHO05D000314 3.8e-13 78.2 63 74.6
C04p22510 Brassica napus HOM05D000445 ORTHO05D000314 5.0e-13 77.8 62 71.0
C04p63040 Brassica napus HOM05D000445 ORTHO05D000314 5.0e-13 77.8 62 71.0
C09p24780 Brassica napus HOM05D000445 ORTHO05D000314 5.0e-13 77.8 62 71.0
BolSC35t60678H Brassica oleracea HOM05D000445 ORTHO05D000314 5.0e-13 77.8 62 71.0
BolSC44t60838H Brassica oleracea HOM05D000445 ORTHO05D000314 5.0e-13 77.8 62 71.0
BolSC45t60924H Brassica oleracea HOM05D000445 ORTHO05D000314 5.0e-13 77.8 62 71.0
BolSC46t60973H Brassica oleracea HOM05D000445 ORTHO05D000314 5.0e-13 77.8 62 71.0
BraSC103t45415Z Brassica rapa HOM05D000445 ORTHO05D000314 5.0e-13 77.8 62 71.0
BraSC103t45439Z Brassica rapa HOM05D000445 ORTHO05D000314 5.0e-13 77.8 62 71.0
BraSC138t45546Z Brassica rapa HOM05D000445 ORTHO05D000314 5.0e-13 77.8 62 71.0
BraSC143t45643Z Brassica rapa HOM05D000445 ORTHO05D000314 5.0e-13 77.8 62 71.0
BraSC25t45893Z Brassica rapa HOM05D000445 ORTHO05D000314 5.0e-13 77.8 62 71.0
Psat0s2065g0040 Pisum sativum HOM05D000445 ORTHO05D000314 5.0e-13 77.8 63 74.6
BolSC47t61053H Brassica oleracea HOM05D000445 ORTHO05D000314 1.1e-12 76.6 62 71.0
Sc02g0005240 Simmondsia chinensis HOM05D000445 ORTHO05D000314 1.1e-12 76.6 63 74.6
QL01p047310 Quercus lobata HOM05D000445 ORTHO05D000314 1.4e-12 76.3 63 73.0
CAN.G1298.14 Capsicum annuum HOM05D000445 ORTHO05D000314 1.9e-12 75.9 66 69.7
CAN.G1298.22 Capsicum annuum HOM05D000445 ORTHO05D000314 1.9e-12 75.9 66 69.7
PGSC0003DMG400020534 Solanum tuberosum HOM05D000445 ORTHO05D000314 1.9e-12 75.9 66 69.7
TAR383G0379 Trochodendron aralioides HOM05D000445 ORTHO05D000314 1.9e-12 75.9 66 66.7
Hma1.2p1_0192F.1_g083680 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 3.2e-12 75.1 63 73.0
Hma1.2p1_0192F.1_g083690 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 3.2e-12 75.1 63 73.0
Hma1.2p1_4210F.1_g338452 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 3.2e-12 75.1 63 73.0
LjContig00489g0008652 Lotus japonicus HOM05D000445 ORTHO05D000314 3.2e-12 75.1 63 73.0
Peaxi162Scf00211g00218 Petunia axillaris HOM05D000445 ORTHO05D000314 3.2e-12 75.1 66 69.7
CAN.G413.6 Capsicum annuum HOM05D000445 ORTHO05D000314 4.2e-12 74.7 66 68.2
CsaV3_UNG209000 Cucumis sativus L. HOM05D000445 ORTHO05D000314 4.2e-12 74.7 63 69.8
DCAR_032529 Daucus carota HOM05D000445 ORTHO05D000314 7.2e-12 73.9 63 71.4
DCAR_032547 Daucus carota HOM05D000445 ORTHO05D000314 7.2e-12 73.9 63 71.4
Solyc00g500037.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 7.2e-12 73.9 66 68.2
Solyc00g500046.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 7.2e-12 73.9 66 68.2
Solyc00g500081.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 7.2e-12 73.9 66 68.2
Solyc00g500128.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 7.2e-12 73.9 66 68.2
Solyc00g500198.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 7.2e-12 73.9 66 68.2
Solyc00g500327.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 7.2e-12 73.9 66 68.2
Sopen02g009120 Solanum pennellii HOM05D000445 ORTHO05D000314 7.2e-12 73.9 66 68.2
Sopen10g008920 Solanum pennellii HOM05D000445 ORTHO05D000314 7.2e-12 73.9 66 68.2
Ah.10g027230 Amaranthus hybridus HOM05D000445 ORTHO05D000314 9.4e-12 73.6 63 69.8
Ah.10g027290 Amaranthus hybridus HOM05D000445 ORTHO05D000314 9.4e-12 73.6 63 69.8
Ah.10g027420 Amaranthus hybridus HOM05D000445 ORTHO05D000314 9.4e-12 73.6 63 69.8
Ah.10g027670 Amaranthus hybridus HOM05D000445 ORTHO05D000314 9.4e-12 73.6 63 69.8
Ah.10g027730 Amaranthus hybridus HOM05D000445 ORTHO05D000314 9.4e-12 73.6 63 69.8
Nitab4.5_0001761g0210 Nicotiana tabacum HOM05D000445 ORTHO05D000314 9.4e-12 73.6 66 66.7
PGSC0003DMG400020691 Solanum tuberosum HOM05D000445 ORTHO05D000314 9.4e-12 73.6 66 66.7
C06p21350 Brassica napus HOM05D000445 ORTHO05D000314 1.2e-11 73.2 63 69.8
CARHR189910 Cardamine hirsuta HOM05D000445 ORTHO05D000314 1.2e-11 73.2 66 62.1
Dinv09726 Davidia involucrata HOM05D000445 ORTHO05D000314 1.2e-11 73.2 62 72.6
Dinv29308 Davidia involucrata HOM05D000445 ORTHO05D000314 1.2e-11 73.2 62 72.6
Dinv39830 Davidia involucrata HOM05D000445 ORTHO05D000314 1.2e-11 73.2 62 72.6
Gohir.D10G110850 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.6e-11 72.8 63 68.3
Nitab4.5_0005100g0080 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.1e-11 72.4 66 65.2
SalBow1G2382 Salvia bowleyana HOM05D000445 ORTHO05D000314 2.1e-11 72.4 63 71.4
SalBow1G2507 Salvia bowleyana HOM05D000445 ORTHO05D000314 2.1e-11 72.4 63 71.4
Nitab4.5_0002093g0200 Nicotiana tabacum HOM05D000445 ORTHO05D000314 4.6e-11 71.2 66 66.7
Solyc00g500147.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 7.9e-11 70.5 66 66.7
unitig_0.g2040 Utricularia gibba HOM05D003517 ORTHO05D009794 1.0e-10 70.1 63 68.3
unitig_87.g27922 Utricularia gibba HOM05D000445 ORTHO05D000314 1.0e-10 70.1 63 68.3
unitig_91.g26489 Utricularia gibba HOM05D000445 ORTHO05D000314 1.0e-10 70.1 63 68.3
unitig_91.g26516 Utricularia gibba HOM05D000445 ORTHO05D000314 1.0e-10 70.1 63 68.3
unitig_91.g26530 Utricularia gibba HOM05D000445 ORTHO05D000314 1.0e-10 70.1 63 68.3
HanXRQChr11g0336101 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-10 69.7 63 66.7
HanXRQChr11g0336121 Helianthus annuus HOM05D000445 ORTHO05D000314 5.1e-10 67.8 63 61.9
EL10Ac2g03166 Beta vulgaris HOM05D000445 ORTHO05D000314 6.7e-10 67.4 62 66.1
EL10As18g24166 Beta vulgaris HOM05D000445 ORTHO05D000314 6.7e-10 67.4 62 66.1
HanXRQChr00c0165g0572211 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-10 67.4 63 61.9
HanXRQChr00c0349g0573991 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-10 67.4 63 61.9
HanXRQChr00c0392g0574461 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-10 67.4 63 61.9
HanXRQChr00c0394g0574511 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-10 67.4 63 61.9
HanXRQChr00c0451g0574821 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-10 67.4 63 61.9
HanXRQChr00c0454g0574911 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-10 67.4 63 61.9
HanXRQChr00c0524g0575411 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-10 67.4 63 61.9
HanXRQChr00c0585g0576231 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-10 67.4 63 61.9
HanXRQChr01g0020161 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-10 67.4 63 61.9
HanXRQChr04g0127431 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-10 67.4 63 61.9
HanXRQChr05g0152341 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-10 67.4 63 61.9
HanXRQChr05g0152501 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-10 67.4 63 61.9
HanXRQChr10g0317961 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-10 67.4 63 61.9
HanXRQChr11g0321171 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-10 67.4 63 61.9
HanXRQChr11g0327091 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-10 67.4 63 61.9
HanXRQChr12g0369911 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-10 67.4 63 61.9
HanXRQChr13g0416601 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-10 67.4 63 61.9
HanXRQChr15g0474951 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-10 67.4 63 61.9
HanXRQCPg0580251 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-10 67.4 63 61.9
HanXRQCPg0580471 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-10 67.4 63 61.9
Nitab4.5_0002616g0090 Nicotiana tabacum HOM05D000445 ORTHO05D000314 6.7e-10 67.4 66 57.6
Gorai.005G167600 Gossypium raimondii HOM05D000445 ORTHO05D000314 8.8e-10 67.0 61 62.3
Lsat_1_v5_gn_0_15580 Lactuca sativa HOM05D000445 ORTHO05D000314 1.1e-09 66.6 63 66.7
Lsat_1_v5_gn_3_13441 Lactuca sativa HOM05D000445 ORTHO05D000314 1.1e-09 66.6 63 66.7
Lsat_1_v5_gn_8_26500 Lactuca sativa HOM05D000445 ORTHO05D000314 1.1e-09 66.6 63 66.7
Lsat_1_v5_gn_9_42020 Lactuca sativa HOM05D000445 ORTHO05D000314 1.1e-09 66.6 63 66.7
Medtr5g010700 Medicago truncatula HOM05D000445 ORTHO05D000314 1.1e-09 66.6 44 79.5
Gohir.D02G149651 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.5e-09 66.2 61 62.3
Solyc04g050840.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.5e-09 66.2 65 63.1
Nitab4.5_0014666g0080 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.3e-09 65.1 61 62.3
Oeu051858.1 Olea europaea HOM05D000445 ORTHO05D000314 3.3e-09 65.1 63 63.5
Gohir.A12G088950 Gossypium hirsutum HOM05D000445 ORTHO05D000314 7.4e-09 63.9 73 54.8
Lsat_1_v5_gn_5_27740 Lactuca sativa HOM05D000445 ORTHO05D000314 7.4e-09 63.9 63 65.1
Sc15g0001780 Simmondsia chinensis HOM05D001387 ORTHO05D001250 7.4e-09 63.9 55 69.1
Oeu062873.1 Olea europaea HOM05D000445 ORTHO05D000314 9.7e-09 63.5 64 62.5
Lsat_1_v5_gn_5_121240 Lactuca sativa HOM05D000445 ORTHO05D000314 1.3e-08 63.2 63 63.5
CSS0030621 Camellia sinensis var. sinensis HOM05D000445 ORTHO05D000314 1.7e-08 62.8 51 72.5
CAN.G1738.16 Capsicum annuum HOM05D000445 ORTHO05D000314 2.8e-08 62.0 57 68.4
Sopen00g002650 Solanum pennellii HOM05D000445 ORTHO05D000314 3.7e-08 61.6 53 69.8
Nitab4.5_0023562g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 4.8e-08 61.2 66 62.1
Oeu012818.1 Olea europaea HOM05D000445 ORTHO05D000314 4.8e-08 61.2 63 61.9
Hund08796 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.8e-08 61.2 63 58.7
Hund10280 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.8e-08 61.2 63 58.7
Hund19326 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.8e-08 61.2 63 58.7
Hund26852 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.8e-08 61.2 63 58.7
Hund28275 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.8e-08 61.2 63 58.7
Hund28591 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.8e-08 61.2 63 58.7
Hund28646 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.8e-08 61.2 63 58.7
Hund28772 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.8e-08 61.2 63 58.7
Hund29199 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.8e-08 61.2 63 58.7
Hund29327 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.8e-08 61.2 63 58.7
Hund29402 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.8e-08 61.2 63 58.7
Hund29423 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.8e-08 61.2 63 58.7
Hund30073 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.8e-08 61.2 63 58.7
Hund30102 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.8e-08 61.2 63 58.7
Hund30995 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.8e-08 61.2 63 58.7
Hund30996 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.8e-08 61.2 63 58.7
Solyc11g028140.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.8e-08 61.2 55 65.5
Nn070s42380 Nelumbo nucifera HOM05D000445 ORTHO05D000314 1.1e-07 60.1 58 62.1
Gorai.002G166000 Gossypium raimondii HOM05D000445 ORTHO05D000314 1.4e-07 59.7 57 64.9
Oeu005220.1 Olea europaea HOM05D000445 ORTHO05D000314 1.4e-07 59.7 60 63.3
EL10Ac2g04287 Beta vulgaris HOM05D000445 ORTHO05D000314 2.4e-07 58.9 68 60.3
Gorai.011G122200 Gossypium raimondii HOM05D000445 ORTHO05D000314 2.4e-07 58.9 61 57.4
CAN.G939.8 Capsicum annuum HOM05D000445 ORTHO05D000314 9.1e-07 57.0 36 77.8
Nitab4.5_0001379g0050 Nicotiana tabacum HOM05D000445 ORTHO05D000314 9.1e-07 57.0 36 77.8
Nitab4.5_0005880g0050 Nicotiana tabacum HOM05D000375 ORTHO05D000240 9.1e-07 57.0 36 77.8
BolSC29t60491H Brassica oleracea HOM05D000445 ORTHO05D000314 3.4e-06 55.1 48 68.8
HanXRQChr10g0284471 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-06 55.1 61 54.1
Nitab4.5_0018503g0010 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.4e-06 55.1 53 66.0
Migut.D01323 Erythranthe guttata HOM05D000445 ORTHO05D000314 4.5e-06 54.7 36 75.0
SGA_v2.0_scaffold907G53716 Striga asiatica HOM05D000445 ORTHO05D000314 4.5e-06 54.7 58 60.3
Actinidia34809 Actinidia chinensis HOM05D000445 ORTHO05D000314 5.9e-06 54.3 68 54.4


User provided reference genes

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