Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 2.3e-57 225.3 111 100.0
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 1.4e-51 206.1 117 88.9
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 2.4e-51 205.3 117 90.6
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 9.6e-48 193.4 115 87.0
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 2.0e-45 185.7 114 85.1
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 1.7e-44 182.6 114 81.6
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 3.2e-43 178.3 109 81.7
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 5.1e-41 171.0 110 80.9
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 6.6e-41 170.6 121 75.2
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 1.5e-40 169.5 106 79.2
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 5.6e-40 167.5 108 75.9
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 7.3e-40 167.2 122 72.1
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 1.6e-39 166.0 125 70.4
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 1.1e-38 163.3 85 89.4
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 1.4e-38 162.9 107 79.4
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 1.8e-38 162.5 106 73.6
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 2.4e-38 162.2 105 74.3
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 4.0e-38 161.4 108 75.0
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 6.9e-38 160.6 87 86.2
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 6.9e-38 160.6 87 86.2
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 6.9e-38 160.6 87 86.2
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 1.5e-37 159.5 83 89.2
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 2.0e-37 159.1 92 82.6
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 2.0e-37 159.1 112 72.3
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 5.8e-37 157.5 86 82.6
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 9.9e-37 156.8 92 81.5
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 9.9e-37 156.8 93 83.9
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 1.7e-36 156.0 110 71.8
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 1.7e-36 156.0 83 88.0
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 1.7e-36 156.0 83 88.0
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 2.2e-36 155.6 93 83.9
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 2.2e-36 155.6 93 83.9
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 2.9e-36 155.2 83 88.0
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 2.9e-36 155.2 87 85.1
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 2.9e-36 155.2 83 85.5
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 3.8e-36 154.8 97 80.4
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 3.8e-36 154.8 83 86.7
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 4.9e-36 154.5 112 67.9
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 6.4e-36 154.1 87 85.1
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 6.4e-36 154.1 109 69.7
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 8.4e-36 153.7 99 78.8
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 8.4e-36 153.7 86 84.9
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 8.4e-36 153.7 87 86.2
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 1.1e-35 153.3 111 70.3
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.1e-35 153.3 83 85.5
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 1.4e-35 152.9 98 78.6
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.4e-35 152.9 93 80.6
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 1.4e-35 152.9 92 79.3
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 1.4e-35 152.9 87 83.9
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 1.9e-35 152.5 87 85.1
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 2.4e-35 152.1 111 69.4
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 3.2e-35 151.8 114 70.2
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 5.4e-35 151.0 98 75.5
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 5.4e-35 151.0 109 68.8
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 5.4e-35 151.0 100 75.0
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 9.3e-35 150.2 87 81.6
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 1.2e-34 149.8 83 84.3
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 1.2e-34 149.8 87 83.9
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 1.2e-34 149.8 90 80.0
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.6e-34 149.4 113 65.5
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 2.1e-34 149.1 87 81.6
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 2.7e-34 148.7 109 67.0
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 2.7e-34 148.7 108 70.4
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 4.6e-34 147.9 87 80.5
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 6.0e-34 147.5 90 78.9
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 6.0e-34 147.5 86 82.6
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 7.9e-34 147.1 83 80.7
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.0e-33 146.7 97 75.3
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.3e-33 146.4 92 76.1
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 2.3e-33 145.6 101 70.3
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 3.9e-33 144.8 112 63.4
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 3.9e-33 144.8 92 76.1
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 6.7e-33 144.1 94 77.7
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 1.1e-32 143.3 83 78.3
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 1.5e-32 142.9 92 75.0
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 1.5e-32 142.9 92 75.0
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 1.5e-32 142.9 92 75.0
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.5e-32 142.9 116 64.7
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.9e-32 142.5 92 76.1
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.9e-32 142.5 92 76.1
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 1.9e-32 142.5 87 80.5
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 2.5e-32 142.1 81 84.0
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.3e-32 141.7 92 76.1
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 4.3e-32 141.4 112 66.1
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 5.6e-32 141.0 93 74.2
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 5.6e-32 141.0 113 62.8
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 5.6e-32 141.0 111 65.8
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 5.6e-32 141.0 87 79.3
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 5.6e-32 141.0 118 62.7
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 7.4e-32 140.6 121 62.0
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 9.6e-32 140.2 110 63.6
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 9.6e-32 140.2 92 72.8
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 1.3e-31 139.8 92 72.8
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 1.3e-31 139.8 92 72.8
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 1.3e-31 139.8 92 72.8
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.3e-31 139.8 87 77.0
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 1.6e-31 139.4 87 74.7
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 1.6e-31 139.4 108 64.8
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 1.6e-31 139.4 93 76.3
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 2.8e-31 138.7 87 74.7
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 2.8e-31 138.7 117 60.7
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 2.8e-31 138.7 94 75.5
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 3.7e-31 138.3 110 62.7
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 3.7e-31 138.3 86 80.2
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 1.1e-30 136.7 92 75.0
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 1.1e-30 136.7 88 77.3
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 1.1e-30 136.7 92 73.9
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 1.4e-30 136.3 92 71.7
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.8e-30 136.0 98 66.3
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 1.8e-30 136.0 93 72.0
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 2.4e-30 135.6 92 72.8
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 5.3e-30 134.4 112 64.3
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 6.9e-30 134.0 88 72.7
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 9.0e-30 133.7 90 72.2
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.2e-29 133.3 98 67.3
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 2.0e-29 132.5 128 57.8
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 2.6e-29 132.1 83 73.5
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 3.4e-29 131.7 132 54.5
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 1.7e-28 129.4 113 59.3
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 1.7e-28 129.4 112 62.5
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 3.8e-28 128.3 117 59.8
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.1e-27 126.7 84 66.7
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.4e-27 126.3 86 67.4
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 1.2e-26 123.2 91 67.0
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 2.1e-26 122.5 72 79.2
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.1e-26 122.5 84 65.5
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 4.6e-26 121.3 87 69.0
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 6.0e-26 120.9 86 68.6
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 6.0e-26 120.9 88 68.2
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 1.3e-25 119.8 104 62.5
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 7.4e-24 114.0 83 68.7
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 2.1e-23 112.5 210 36.7
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 2.8e-23 112.1 86 65.1
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 4.8e-23 111.3 94 67.0
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.4e-22 109.0 87 64.4
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.4e-22 109.0 110 57.3
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.0e-22 108.2 90 65.6
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 3.8e-20 101.7 72 69.4
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 4.9e-20 101.3 65 76.9
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 6.5e-20 100.9 92 58.7
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 3.2e-19 98.6 59 78.0
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 5.5e-19 97.8 61 77.0
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 1.5e-16 89.7 74 60.8
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 1.9e-16 89.4 77 57.1
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 1.9e-16 89.4 77 57.1
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 5.7e-16 87.8 61 73.8
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 7.4e-16 87.4 93 49.5
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 7.4e-16 87.4 51 80.4
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 7.4e-16 87.4 65 61.5
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 1.3e-15 86.7 50 84.0
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 1.1e-14 83.6 63 65.1
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 4.1e-14 81.6 79 46.8
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 6.9e-14 80.9 67 59.7
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.2e-12 75.9 67 56.7
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 2.2e-12 75.9 55 63.6
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 8.5e-12 73.9 68 50.0
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.6e-10 69.7 50 74.0
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 1.4e-09 66.6 78 50.0
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 1.5e-08 63.2 72 47.2
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 4.3e-08 61.6 69 52.2
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 5.7e-08 61.2 65 46.2
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 5.7e-08 61.2 65 46.2
FAN28G0201 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.1e-06 55.1 40 75.0


User provided reference genes

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