Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 6.2e-114 414.1 201 100.0
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 9.2e-33 144.4 136 62.5
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 2.1e-32 143.3 249 41.8
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 2.3e-31 139.8 300 35.0
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 2.3e-31 139.8 264 38.3
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 2.5e-30 136.3 266 39.5
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 5.6e-30 135.2 136 58.8
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 7.3e-30 134.8 264 37.5
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 1.6e-29 133.7 248 39.1
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 4.7e-29 132.1 249 39.8
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 6.2e-29 131.7 266 38.0
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 8.1e-29 131.3 127 61.4
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 5.2e-28 128.6 266 36.8
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 8.9e-28 127.9 264 36.4
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 5.8e-27 125.2 249 36.5
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 1.3e-26 124.0 270 36.7
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.3e-26 124.0 251 37.1
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 1.7e-26 123.6 251 36.7
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 1.7e-26 123.6 267 35.6
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 2.9e-26 122.9 249 36.9
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 3.8e-26 122.5 251 36.7
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 1.1e-25 120.9 273 34.8
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 1.9e-25 120.2 185 43.8
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 2.4e-25 119.8 265 35.1
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 4.2e-25 119.0 248 34.7
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.2e-25 119.0 251 37.1
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 4.2e-25 119.0 250 36.0
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 7.1e-25 118.2 269 34.2
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 9.2e-25 117.9 265 34.7
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 1.2e-24 117.5 250 33.6
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 2.1e-24 116.7 248 35.5
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 2.7e-24 116.3 138 51.4
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 2.7e-24 116.3 269 34.6
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 4.6e-24 115.5 252 34.5
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 1.0e-23 114.4 141 50.4
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 1.0e-23 114.4 255 33.7
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 1.7e-23 113.6 138 49.3
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 1.7e-23 113.6 127 52.0
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 2.3e-23 113.2 254 33.9
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 2.3e-23 113.2 250 32.4
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 3.0e-23 112.8 254 34.3
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 3.0e-23 112.8 254 34.3
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 3.0e-23 112.8 137 48.9
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 3.9e-23 112.5 252 33.7
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 5.1e-23 112.1 254 34.3
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 8.7e-23 111.3 254 33.9
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 1.1e-22 110.9 254 33.9
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 1.1e-22 110.9 254 33.1
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 1.5e-22 110.5 254 33.9
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 1.5e-22 110.5 254 33.9
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 1.5e-22 110.5 254 34.3
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 1.5e-22 110.5 141 48.2
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 2.5e-22 109.8 252 33.3
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 2.5e-22 109.8 269 33.1
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 2.5e-22 109.8 138 49.3
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 2.5e-22 109.8 252 33.3
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 3.3e-22 109.4 185 38.9
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 4.3e-22 109.0 291 33.7
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 5.6e-22 108.6 253 33.2
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 5.6e-22 108.6 258 33.7
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 5.6e-22 108.6 268 32.1
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 7.3e-22 108.2 268 32.1
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 9.6e-22 107.8 141 46.1
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 1.2e-21 107.5 185 39.5
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 1.6e-21 107.1 292 33.2
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 3.6e-21 105.9 250 31.6
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 3.6e-21 105.9 271 32.5
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 4.7e-21 105.5 141 46.1
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 8.1e-21 104.8 141 45.4
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 8.1e-21 104.8 210 35.2
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 1.4e-20 104.0 260 34.2
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 1.4e-20 104.0 141 46.1
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 1.8e-20 103.6 141 46.1
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 1.8e-20 103.6 267 31.1
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 1.8e-20 103.6 210 35.2
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 3.1e-20 102.8 239 33.9
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 3.1e-20 102.8 189 38.6
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 3.1e-20 102.8 191 37.2
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 4.0e-20 102.4 208 37.5
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 5.3e-20 102.1 141 43.3
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 9.0e-20 101.3 139 46.8
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 1.2e-19 100.9 141 46.1
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 1.2e-19 100.9 285 30.9
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 1.5e-19 100.5 262 34.0
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 2.0e-19 100.1 208 37.0
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 3.4e-19 99.4 75 70.7
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 4.4e-19 99.0 271 30.3
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 4.4e-19 99.0 75 68.0
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 5.8e-19 98.6 286 30.4
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 9.9e-19 97.8 265 32.8
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.3e-18 97.4 54 81.5
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.3e-18 97.4 54 81.5
Gohir.A12G000900 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.3e-18 97.4 54 81.5
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.3e-18 97.4 54 81.5
Gohir.D04G118901 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.3e-18 97.4 54 81.5
Gorai.010G146900 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.3e-18 97.4 54 81.5
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.7e-18 97.1 54 81.5
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 1.7e-18 97.1 184 37.0
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 4.9e-18 95.5 54 79.6
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 6.4e-18 95.1 54 79.6
Gohir.D06G126066 Gossypium hirsutum HOM05D002536 ORTHO05D006290 6.4e-18 95.1 54 79.6
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 8.4e-18 94.7 141 42.6
Gohir.D02G126132 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.1e-17 94.4 54 79.6
Gohir.D03G005233 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.1e-17 94.4 53 79.2
Gorai.007G247100 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.1e-17 94.4 53 79.2
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 1.4e-17 94.0 256 30.5
Gorai.012G115800 Gossypium raimondii HOM05D002536 ORTHO05D006290 3.2e-17 92.8 53 77.4
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 7.1e-17 91.7 52 78.8
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 4.6e-16 89.0 75 60.0
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 6.0e-16 88.6 156 39.1
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 1.3e-15 87.4 142 38.0
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 2.3e-15 86.7 64 75.0
Gorai.003G061900 Gossypium raimondii HOM05D002536 ORTHO05D006290 3.0e-15 86.3 53 75.5
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 5.1e-15 85.5 75 62.7
TPR.G22657 Trifolium pratense HOM05D002536 ORTHO05D006290 6.6e-15 85.1 54 81.5
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 1.1e-14 84.3 52 69.2
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 1.5e-14 84.0 64 73.4
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 1.5e-14 84.0 141 38.3
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 1.5e-14 84.0 64 68.8
Gohir.D10G126550 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.9e-14 83.6 53 71.7
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 2.5e-14 83.2 75 60.0
QL11p004025 Quercus lobata HOM05D002536 ORTHO05D006290 2.5e-14 83.2 52 71.2
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 9.6e-14 81.3 89 58.4
TPR.G5666 Trifolium pratense HOM05D002536 ORTHO05D006290 9.6e-14 81.3 51 82.4
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 2.8e-13 79.7 75 57.3
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 8.1e-13 78.2 84 46.4
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 2.0e-11 73.6 75 53.3
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 2.6e-11 73.2 73 52.1
TPR.G3472 Trifolium pratense HOM05D002536 ORTHO05D000008 3.2e-09 66.2 32 93.8


User provided reference genes

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