Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3472 Trifolium pratense HOM05D002536 ORTHO05D000008 1.1e-113 413.3 210 100.0
TPR.G14561 Trifolium pratense HOM05D000009 ORTHO05D000008 2.2e-24 116.7 75 81.3
Medtr8g106550 Medicago truncatula HOM05D000009 ORTHO05D000008 3.7e-24 115.9 63 87.3
TPR.G8096 Trifolium pratense HOM05D000009 ORTHO05D000008 1.8e-23 113.6 75 77.3
TPR.G14563 Trifolium pratense HOM05D000009 ORTHO05D000008 2.4e-23 113.2 75 76.0
TPR.G35615 Trifolium pratense HOM05D000009 ORTHO05D000008 6.9e-23 111.7 75 77.3
TPR.G14557 Trifolium pratense HOM05D000009 ORTHO05D000008 9.0e-23 111.3 63 81.0
Medtr3g033240 Medicago truncatula HOM05D000009 ORTHO05D000008 2.0e-22 110.2 75 74.7
Medtr3g034380 Medicago truncatula HOM05D000009 ORTHO05D000008 2.6e-22 109.8 75 72.0
TPR.G28382 Trifolium pratense HOM05D000009 ORTHO05D003559 4.5e-22 109.0 75 74.7
Medtr3g028040 Medicago truncatula HOM05D000009 ORTHO05D000008 2.9e-21 106.3 76 69.7
Medtr3g030960 Medicago truncatula HOM05D000009 ORTHO05D000008 8.5e-21 104.8 75 70.7
Medtr3g030980 Medicago truncatula HOM05D000009 ORTHO05D000008 8.5e-21 104.8 75 70.7
Medtr3g435720 Medicago truncatula HOM05D000009 ORTHO05D000008 1.4e-20 104.0 75 70.7
Medtr3g032110 Medicago truncatula HOM05D000009 ORTHO05D000008 1.9e-20 103.6 76 72.4
Medtr3g032960 Medicago truncatula HOM05D000009 ORTHO05D000008 1.9e-20 103.6 75 73.3
TPR.G12203 Trifolium pratense HOM05D000009 ORTHO05D002159 1.9e-20 103.6 63 81.0
Psat5g213520 Pisum sativum HOM05D000009 ORTHO05D000008 2.5e-20 103.2 61 77.0
Medtr3g034460 Medicago truncatula HOM05D000009 ORTHO05D000008 3.2e-20 102.8 76 69.7
Medtr3g033860 Medicago truncatula HOM05D000009 ORTHO05D000008 4.2e-20 102.4 76 69.7
Medtr3g035940 Medicago truncatula HOM05D000009 ORTHO05D000008 5.5e-20 102.1 63 76.2
Medtr2g063777 Medicago truncatula HOM05D000009 ORTHO05D000008 7.2e-20 101.7 75 70.7
Psat5g210800 Pisum sativum HOM05D000009 ORTHO05D000008 7.2e-20 101.7 63 74.6
Medtr3g032800 Medicago truncatula HOM05D000009 ORTHO05D000008 1.6e-19 100.5 75 68.0
Medtr3g032150 Medicago truncatula HOM05D000009 ORTHO05D000008 2.1e-19 100.1 76 69.7
Medtr0002s0110 Medicago truncatula HOM05D000009 ORTHO05D000008 2.7e-19 99.8 63 74.6
Medtr3g035480 Medicago truncatula HOM05D000009 ORTHO05D000008 2.7e-19 99.8 63 74.6
Medtr3g035840 Medicago truncatula HOM05D000009 ORTHO05D000008 2.7e-19 99.8 63 74.6
Medtr0002s0090 Medicago truncatula HOM05D000009 ORTHO05D000008 3.6e-19 99.4 63 74.6
Medtr3g035500 Medicago truncatula HOM05D000009 ORTHO05D000008 3.6e-19 99.4 63 74.6
Medtr3g035960 Medicago truncatula HOM05D000009 ORTHO05D000008 4.6e-19 99.0 63 73.0
Ca_22694_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 6.1e-19 98.6 63 73.0
Medtr3g034430 Medicago truncatula HOM05D000009 ORTHO05D000008 6.1e-19 98.6 75 66.7
Medtr3g032370 Medicago truncatula HOM05D000009 ORTHO05D000008 1.4e-18 97.4 75 69.3
Psat2g084880 Pisum sativum HOM05D000009 ORTHO05D000008 1.4e-18 97.4 63 73.0
Medtr3g032760 Medicago truncatula HOM05D000009 ORTHO05D000008 1.8e-18 97.1 75 65.3
Medtr6g084550 Medicago truncatula HOM05D000009 ORTHO05D000008 5.1e-18 95.5 65 75.4
Medtr0083s0110 Medicago truncatula HOM05D000009 ORTHO05D000008 1.3e-16 90.9 75 68.0
TPR.G26682 Trifolium pratense HOM05D000009 ORTHO05D000008 2.8e-16 89.7 63 74.6
TPR.G27940 Trifolium pratense HOM05D000009 ORTHO05D000008 4.8e-16 89.0 65 72.3
Psat5g212880 Pisum sativum HOM05D000009 ORTHO05D000008 8.2e-16 88.2 75 61.3
Psat0s3208g0040 Pisum sativum HOM05D000009 ORTHO05D000008 2.0e-14 83.6 63 65.1
Psat5g202280 Pisum sativum HOM05D000009 ORTHO05D000008 2.0e-14 83.6 63 65.1
Psat5g209520 Pisum sativum HOM05D000009 ORTHO05D000008 2.0e-14 83.6 63 65.1
Ca_25494_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 2.9e-13 79.7 63 61.9
Medtr7g078790 Medicago truncatula HOM05D000009 ORTHO05D000008 5.5e-12 75.5 63 63.5
Medtr8g030860 Medicago truncatula HOM05D000009 ORTHO05D000008 1.6e-11 73.9 63 60.3
Psat3g106600 Pisum sativum HOM05D000009 ORTHO05D000008 2.0e-09 67.0 63 63.5
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 4.4e-09 65.9 32 93.8
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 5.7e-09 65.5 32 93.8
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 7.4e-09 65.1 32 90.6
Gohir.D06G126066 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.3e-08 64.3 34 85.3
Gorai.010G146900 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.3e-08 64.3 34 85.3
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 3.7e-08 62.8 34 82.4
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 3.7e-08 62.8 32 87.5
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 4.8e-08 62.4 121 37.2
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 8.2e-08 61.6 32 84.4
Glyma.20G046200 Glycine max HOM05D000009 ORTHO05D000008 8.2e-08 61.6 63 52.4
Prupe.2G043200 Prunus persica HOM05D000009 ORTHO05D000008 8.2e-08 61.6 76 43.4
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 1.1e-07 61.2 32 84.4
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 1.1e-07 61.2 32 84.4
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 1.1e-07 61.2 32 84.4
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 1.4e-07 60.8 32 84.4
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 1.4e-07 60.8 32 84.4
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 1.4e-07 60.8 32 84.4
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 1.4e-07 60.8 32 84.4
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.4e-07 60.8 32 84.4
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.4e-07 60.8 32 84.4
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.4e-07 60.8 32 84.4
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.4e-07 60.8 32 84.4
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.4e-07 60.8 32 84.4
Gohir.A12G000900 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.4e-07 60.8 32 84.4
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.4e-07 60.8 32 84.4
Gohir.D03G005233 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.4e-07 60.8 32 84.4
Gohir.D04G118901 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.4e-07 60.8 32 84.4
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.4e-07 60.8 32 84.4
Gorai.003G061900 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.4e-07 60.8 32 84.4
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.4e-07 60.8 32 84.4
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.4e-07 60.8 32 84.4
Gorai.007G247100 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.4e-07 60.8 32 84.4
Gorai.012G115800 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.4e-07 60.8 32 84.4
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 1.4e-07 60.8 32 81.2
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 1.8e-07 60.5 32 81.2
Prupe.2G052200 Prunus persica HOM05D000009 ORTHO05D000008 1.8e-07 60.5 73 45.2
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 2.4e-07 60.1 32 81.2
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 2.4e-07 60.1 32 81.2
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 3.1e-07 59.7 31 80.6
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 3.1e-07 59.7 31 80.6
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 3.1e-07 59.7 32 78.1
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 3.1e-07 59.7 32 81.2
Gohir.D02G126132 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.1e-07 59.7 32 81.2
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 3.1e-07 59.7 53 52.8
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 3.1e-07 59.7 53 52.8
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 4.1e-07 59.3 32 84.4
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 4.1e-07 59.3 32 78.1
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 4.1e-07 59.3 32 81.2
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 5.3e-07 58.9 32 81.2
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 5.3e-07 58.9 32 81.2
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 5.3e-07 58.9 32 81.2
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 5.3e-07 58.9 32 78.1
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 5.3e-07 58.9 42 69.0
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 5.3e-07 58.9 32 81.2
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 7.0e-07 58.5 32 81.2
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 7.0e-07 58.5 32 81.2
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 9.1e-07 58.2 31 80.6
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 9.1e-07 58.2 32 81.2
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 1.2e-06 57.8 32 75.0
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 1.2e-06 57.8 32 78.1
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 1.2e-06 57.8 32 78.1
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 1.2e-06 57.8 32 75.0
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 1.2e-06 57.8 32 78.1
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 2.6e-06 56.6 32 75.0
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 2.6e-06 56.6 32 78.1
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 2.6e-06 56.6 32 78.1
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 2.6e-06 56.6 32 81.2
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 3.5e-06 56.2 32 75.0
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 3.5e-06 56.2 32 71.9
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 3.5e-06 56.2 34 70.6
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 3.5e-06 56.2 34 70.6
Glyma.20G046100 Glycine max HOM05D000009 ORTHO05D000008 4.5e-06 55.8 63 49.2
MD07G1050700 Malus domestica HOM05D000009 ORTHO05D000008 4.5e-06 55.8 66 43.9
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 4.5e-06 55.8 32 71.9
GSVIVG01013307001 Vitis vinifera HOM05D000009 ORTHO05D000008 4.5e-06 55.8 73 45.2
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 5.9e-06 55.5 32 75.0
MD07G1044500 Malus domestica HOM05D000009 ORTHO05D000008 5.9e-06 55.5 60 48.3
Medtr3g014510 Medicago truncatula HOM05D000009 ORTHO05D000008 5.9e-06 55.5 70 44.3
Phvul.011G197400 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 5.9e-06 55.5 62 48.4
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 7.7e-06 55.1 34 73.5
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 7.7e-06 55.1 32 71.9
MD07G1040300 Malus domestica HOM05D000009 ORTHO05D000008 7.7e-06 55.1 82 42.7
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 7.7e-06 55.1 32 71.9
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 7.7e-06 55.1 58 50.0
Prupe.2G037800 Prunus persica HOM05D000009 ORTHO05D000008 7.7e-06 55.1 68 44.1
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 7.7e-06 55.1 32 78.1


User provided reference genes

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