Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34705 Trifolium pratense HOM05D006399 ORTHO05D007988 1.9e-281 971.8 500 100.0
Medtr5g042100 Medicago truncatula HOM05D006399 ORTHO05D007988 5.0e-245 850.9 484 91.3
Psat2g116280 Pisum sativum HOM05D006399 ORTHO05D007988 1.9e-236 822.4 487 87.9
Ca_04827_v3 Cicer arietinum L. HOM05D006399 ORTHO05D007988 4.8e-216 754.6 494 81.0
Glyma.02G110300 Glycine max HOM05D006399 ORTHO05D007988 1.4e-194 683.3 499 70.3
Phvul.003G046500 Phaseolus vulgaris HOM05D006399 ORTHO05D007988 1.3e-189 666.8 495 69.3
Glyma.01G052300 Glycine max HOM05D006399 ORTHO05D007988 3.0e-189 665.6 498 70.3
Lj2g0004295 Lotus japonicus HOM05D006399 ORTHO05D007988 1.2e-187 660.2 502 66.5
Lalb_Chr04g0255911 Lupinus albus HOM05D006399 ORTHO05D007988 3.1e-186 655.6 507 68.0
VMungo1215G0113 Vigna mungo HOM05D006399 ORTHO05D007988 2.1e-182 642.9 493 69.2
Atru.chr11.1740 Acer truncatum HOM05D006399 ORTHO05D007988 6.4e-160 568.2 473 63.6
Haze_11970 Corylus avellana HOM05D006399 ORTHO05D007988 7.1e-159 564.7 498 59.6
CiPaw.05G130700 Carya illinoinensis HOM05D006399 ORTHO05D007988 4.6e-158 562.0 494 56.9
Cfa008944 Carpinus fangiana HOM05D006399 ORTHO05D007988 3.0e-157 559.3 498 60.6
Potri.008G089800 Populus trichocarpa HOM05D006399 ORTHO05D007988 3.0e-157 559.3 493 58.0
Thecc.02G341500 Theobroma cacao HOM05D006399 ORTHO05D007988 1.9e-156 556.6 489 56.0
CSS0033869 Camellia sinensis var. sinensis HOM05D006399 ORTHO05D007988 2.5e-156 556.2 455 60.2
Manes.05G105200 Manihot esculenta HOM05D006399 ORTHO05D007988 5.6e-156 555.1 463 59.2
Sabra08G0067200 Salix brachista HOM05D006399 ORTHO05D007988 1.4e-154 550.4 491 59.5
Oeu005762.1 Olea europaea HOM05D006399 ORTHO05D007988 1.0e-152 544.3 467 57.6
CANSAT64G0537 Cannabis sativa HOM05D006399 ORTHO05D007988 2.9e-152 542.7 494 55.7
Dinv34129 Davidia involucrata HOM05D006399 ORTHO05D007988 8.4e-152 541.2 484 56.6
Cpa.g.sc1.57 Carica papaya HOM05D006399 ORTHO05D007988 1.6e-150 537.0 476 56.9
Duzib248G1019 Durio zibethinus HOM05D006399 ORTHO05D007988 1.6e-150 537.0 490 61.4
DCAR_007171 Daucus carota HOM05D006399 ORTHO05D007988 2.7e-150 536.2 443 58.0
Gorai.013G088500 Gossypium raimondii HOM05D006399 ORTHO05D007988 1.0e-149 534.3 486 56.2
RcHm_v2.0_Chr4g0439341 Rosa chinensis HOM05D006399 ORTHO05D007988 2.3e-149 533.1 489 55.6
TAR622G1196 Trochodendron aralioides HOM05D006399 ORTHO05D007988 3.9e-149 532.3 480 55.8
Actinidia17748 Actinidia chinensis HOM05D006399 ORTHO05D007988 6.7e-149 531.6 496 55.4
Prupe.1G278300 Prunus persica HOM05D006399 ORTHO05D007988 1.1e-148 530.8 505 53.3
Gohir.D13G077400 Gossypium hirsutum HOM05D006399 ORTHO05D007988 3.3e-148 529.3 486 55.8
FAN07G1460 Fragaria x ananassa HOM05D006399 ORTHO05D007988 5.7e-148 528.5 487 55.0
Lsat_1_v5_gn_3_51980 Lactuca sativa HOM05D006399 ORTHO05D007988 7.4e-148 528.1 448 63.4
HanXRQChr15g0476901 Helianthus annuus HOM05D006399 ORTHO05D007988 3.7e-147 525.8 453 57.4
FvH4_4g30980 Fragaria vesca HOM05D006399 ORTHO05D007988 1.1e-146 524.2 485 54.2
Nitab4.5_0004661g0030 Nicotiana tabacum HOM05D006399 ORTHO05D007988 1.4e-146 523.9 373 67.0
Eucgr.B03205 Eucalyptus grandis HOM05D006399 ORTHO05D007988 6.9e-146 521.5 473 56.4
Nitab4.5_0000145g0020 Nicotiana tabacum HOM05D006399 ORTHO05D007988 1.5e-145 520.4 489 55.8
FAN12G0639 Fragaria x ananassa HOM05D006399 ORTHO05D007988 2.0e-145 520.0 486 54.3
Rhsim12G0079500 Rhododendron simsii HOM05D006399 ORTHO05D007988 5.8e-145 518.5 501 53.3
MD16G1068900 Malus domestica HOM05D006399 ORTHO05D007988 2.9e-144 516.2 374 64.2
Cc00_g16610 Coffea canephora HOM05D006399 ORTHO05D007988 4.9e-144 515.4 498 54.0
Aqoxy3G00634 Aquilegia oxysepala HOM05D006399 ORTHO05D007988 1.4e-143 513.8 467 54.6
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 7.1e-143 511.5 369 63.7
Nn3g17286 Nelumbo nucifera HOM05D006399 ORTHO05D007988 2.1e-142 510.0 443 58.5
Nn3g17302 Nelumbo nucifera HOM05D006399 ORTHO05D007988 2.1e-142 510.0 443 58.5
PSO210G1214 Papaver somniferum HOM05D006399 ORTHO05D007988 3.9e-141 505.8 476 53.6
Actinidia31971 Actinidia chinensis HOM05D006399 ORTHO05D007988 1.1e-140 504.2 456 55.5
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 1.9e-140 503.4 363 64.2
Cfa008945 Carpinus fangiana HOM05D006399 ORTHO05D007988 4.3e-140 502.3 484 52.1
Haze_11971 Corylus avellana HOM05D006399 ORTHO05D007988 4.5e-137 492.3 493 50.7
CAN.G1335.8 Capsicum annuum HOM05D006399 ORTHO05D007988 7.7e-137 491.5 448 55.6
CiPaw.06G087600 Carya illinoinensis HOM05D006399 ORTHO05D007988 1.3e-136 490.7 481 52.0
Migut.L01261 Erythranthe guttata HOM05D006399 ORTHO05D007988 2.9e-136 489.6 463 55.3
AL1G38940 Arabidopsis lyrata HOM05D006399 ORTHO05D007988 5.0e-136 488.8 379 60.7
PGR102G0590 Punica granatum HOM05D006399 ORTHO05D007988 1.1e-135 487.6 497 51.9
AT1G26761 Arabidopsis thaliana HOM05D006399 ORTHO05D007988 1.9e-135 486.9 380 61.3
Eucgr.G02484 Eucalyptus grandis HOM05D006399 ORTHO05D007988 5.5e-135 485.3 481 52.0
THA.LOC104808694 Tarenaya hassleriana HOM05D006399 ORTHO05D007988 5.5e-135 485.3 467 54.2
FAN22G0994 Fragaria x ananassa HOM05D006399 ORTHO05D007988 1.6e-134 483.8 485 52.0
unitig_699.g19915 Utricularia gibba HOM05D006399 ORTHO05D007988 1.6e-134 483.8 483 51.3
FAN07G2088 Fragaria x ananassa HOM05D006399 ORTHO05D007988 4.6e-134 482.3 485 52.4
CSS0044828 Camellia sinensis var. sinensis HOM05D006399 ORTHO05D007988 6.1e-134 481.9 459 54.5
Thhalv10007591m.g Eutrema salsugineum HOM05D006399 ORTHO05D007988 1.4e-133 480.7 381 59.3
FvH4_4g30990 Fragaria vesca HOM05D006399 ORTHO05D007988 1.4e-133 480.7 485 51.8
QL03p069077 Quercus lobata HOM05D006399 ORTHO05D007988 3.9e-133 479.2 484 51.4
QL93p1999_0143 Quercus lobata HOM05D006399 ORTHO05D007988 3.9e-133 479.2 484 51.4
Carub.0001s2425 Capsella rubella HOM05D006399 ORTHO05D007988 1.5e-132 477.2 379 60.2
FAN12G2051 Fragaria x ananassa HOM05D006399 ORTHO05D007988 1.5e-132 477.2 485 51.5
Ah.02g129470 Amaranthus hybridus HOM05D006399 ORTHO05D007988 1.7e-131 473.8 371 59.8
Aa31LG7G8360 Aethionema arabicum HOM05D006399 ORTHO05D007988 2.8e-131 473.0 375 59.5
EL10Ac6g13248 Beta vulgaris HOM05D006399 ORTHO05D007988 4.8e-131 472.2 470 52.8
Sp1g22040 Schrenkiella parvula HOM05D006399 ORTHO05D007988 6.3e-131 471.9 383 58.2
PGSC0003DMG400018440 Solanum tuberosum HOM05D006399 ORTHO05D007988 8.2e-131 471.5 443 54.9
GSVIVG01005154001 Vitis vinifera HOM05D006399 ORTHO05D007988 1.4e-130 470.7 438 52.5
Dinv07949 Davidia involucrata HOM05D006399 ORTHO05D007988 3.1e-130 469.5 428 56.5
QL12p039367 Quercus lobata HOM05D006399 ORTHO05D007988 4.1e-130 469.2 476 51.1
BraA09t39516Z Brassica rapa HOM05D006399 ORTHO05D007988 2.6e-129 466.5 371 59.0
RcHm_v2.0_Chr4g0439361 Rosa chinensis HOM05D006399 ORTHO05D007988 2.6e-129 466.5 453 53.2
Dinv34130 Davidia involucrata HOM05D006399 ORTHO05D007988 3.4e-129 466.1 428 56.3
Peaxi162Scf00222g00816 Petunia axillaris HOM05D006399 ORTHO05D007988 7.7e-129 464.9 368 59.2
A09p40180 Brassica napus HOM05D006399 ORTHO05D007988 5.0e-128 462.2 372 58.9
BcaC05g26389 Brassica carinata HOM05D006399 ORTHO05D007988 8.5e-128 461.5 374 58.6
C05p24200 Brassica napus HOM05D006399 ORTHO05D007988 8.5e-128 461.5 374 58.6
BolC5t31156H Brassica oleracea HOM05D006399 ORTHO05D007988 8.5e-128 461.5 374 58.6
Solyc05g007680.1 Solanum lycopersicum HOM05D006399 ORTHO05D007988 8.5e-128 461.5 373 60.9
GSVIVG01005153001 Vitis vinifera HOM05D006399 ORTHO05D007988 1.1e-127 461.1 469 56.5
Sopen05g003560 Solanum pennellii HOM05D006399 ORTHO05D007988 5.5e-127 458.8 441 54.0
QL12p039232 Quercus lobata HOM05D006399 ORTHO05D007988 1.6e-126 457.2 486 49.2
Atru.chr11.1742 Acer truncatum HOM05D006399 ORTHO05D007988 2.1e-126 456.8 501 48.9
CDE06G2322 Ceratophyllum demersum HOM05D006399 ORTHO05D007988 3.6e-126 456.1 356 61.8
ATR0564G327 Amborella trichopoda HOM05D006399 ORTHO05D007988 6.1e-126 455.3 480 51.7
Manes.01G033900 Manihot esculenta HOM05D006399 ORTHO05D007988 7.9e-126 454.9 370 60.0
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 4.8e-123 445.7 375 55.7
CARHR025180 Cardamine hirsuta HOM05D006399 ORTHO05D007988 7.7e-121 438.3 362 57.7
PGR102G2002 Punica granatum HOM05D006399 ORTHO05D007988 7.7e-121 438.3 377 57.3
SEGI_38638 Sequoiadendron giganteum HOM05D006399 ORTHO05D007988 1.6e-118 430.6 371 52.8
CiPaw.05G130800 Carya illinoinensis HOM05D006399 ORTHO05D007988 3.6e-110 402.9 499 44.5
Pp3c5_14870 Physcomitrium patens HOM05D006399 ORTHO05D007988 8.5e-104 381.7 373 50.1
FAN22G2397 Fragaria x ananassa HOM05D006399 ORTHO05D007988 8.9e-93 345.1 480 42.5
MSTRG.719 Avicennia marina HOM05D006399 ORTHO05D007988 8.6e-88 328.6 323 52.3
Os08g0433300 Oryza sativa ssp. japonica HOM05D006399 ORTHO05D007988 6.8e-77 292.4 358 44.1
MBI05_g36409_MAGBIO Magnolia biondii HOM05D006399 ORTHO05D007988 4.1e-74 283.1 212 65.1
AUR62032821 Chenopodium quinoa HOM05D006399 ORTHO05D007988 1.2e-73 281.6 255 53.7
SalBow2G2517 Salvia bowleyana HOM05D006399 ORTHO05D007988 1.0e-72 278.5 207 62.3
Zm00001eb041520 Zea mays HOM05D006399 ORTHO05D007988 8.6e-72 275.4 353 43.9
Ciclev10032022m.g Citrus clementina HOM05D006399 ORTHO05D007988 5.6e-71 272.7 466 38.0
Cre06.g273050 Chlamydomonas reinhardtii HOM05D006399 ORTHO05D007988 4.1e-66 256.5 399 37.6
Lj7C251T2 Lonicera japonica HOM05D006399 ORTHO05D007988 1.4e-53 214.9 309 39.2
PRCOL_00004009 Prasinoderma coloniale HOM05D006399 ORTHO05D007988 4.0e-53 213.4 393 34.4
COL.COLO4_27992 Corchorus olitorius HOM05D006399 ORTHO05D007988 1.2e-33 148.7 232 40.1
Pp3c9_20180 Physcomitrium patens HOM05D006399 ORTHO05D007988 2.7e-33 147.5 375 31.5
Lj7P254T18 Lonicera japonica HOM05D006399 ORTHO05D007988 6.3e-30 136.3 112 58.0
TWI75G1459 Tripterygium wilfordii HOM05D006399 ORTHO05D007988 6.3e-30 136.3 179 44.1
CDE02G1760 Ceratophyllum demersum HOM05D006399 ORTHO05D007988 6.9e-29 132.9 129 52.7
SEGI_07124 Sequoiadendron giganteum HOM05D006399 ORTHO05D007988 5.0e-27 126.7 329 32.8
AagrBONN_evm.TU.Sc2ySwM_362.1792 Anthoceros agrestis HOM05D006399 ORTHO05D007988 1.1e-26 125.6 378 27.5
Pp3c11_9510 Physcomitrium patens HOM05D006399 ORTHO05D007988 2.5e-26 124.4 392 29.8
SEGI_31378 Sequoiadendron giganteum HOM05D006399 ORTHO05D007988 5.5e-26 123.2 371 28.8
Pp3c2_5840 Physcomitrium patens HOM05D006399 ORTHO05D007988 1.6e-22 111.7 226 36.3
Hma1.2p1_0235F.1_g098770 Hydrangea macrophylla HOM05D006399 ORTHO05D007988 2.2e-19 101.3 53 79.2
AagrBONN_evm.TU.Sc2ySwM_362.1561 Anthoceros agrestis HOM05D006399 ORTHO05D007988 4.6e-17 93.6 300 31.0
SGA_v2.0_scaffold109G31082 Striga asiatica HOM05D006399 ORTHO05D007988 3.7e-06 57.4 40 65.0


User provided reference genes

Program Settings