Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34687 Trifolium pratense HOM05D007639 ORTHO05D009509 6.4e-131 472.6 752 100.0
Medtr2g049740 Medicago truncatula HOM05D007639 ORTHO05D009509 5.2e-101 373.2 752 90.8
Psat1g020640 Pisum sativum HOM05D007639 ORTHO05D009509 8.9e-101 372.5 752 92.7
Ca_02594_v3 Cicer arietinum L. HOM05D007639 ORTHO05D009509 2.0e-92 344.7 752 89.9
Lj6g0022088 Lotus japonicus HOM05D007639 ORTHO05D009509 2.5e-66 258.1 745 85.0
Glyma.09G089200 Glycine max HOM05D007639 ORTHO05D009509 3.4e-60 237.7 740 84.2
Phvul.009G213300 Phaseolus vulgaris HOM05D007639 ORTHO05D009509 1.3e-54 219.2 196 57.1
VMungo1309G2587 Vigna mungo HOM05D007639 ORTHO05D009509 1.1e-53 216.1 188 59.0
Lalb_Chr23g0275911 Lupinus albus HOM05D007639 ORTHO05D009509 5.5e-50 203.8 742 80.2
Cfa018449 Carpinus fangiana HOM05D007639 ORTHO05D009509 6.5e-43 180.3 198 49.5
RcHm_v2.0_Chr6g0300361 Rosa chinensis HOM05D007639 ORTHO05D009509 1.1e-42 179.5 358 67.6
Manes.05G164100 Manihot esculenta HOM05D007639 ORTHO05D009509 1.9e-42 178.7 188 51.6
Haze_17619 Corylus avellana HOM05D007639 ORTHO05D009509 2.5e-42 178.3 198 49.5
Dinv39377 Davidia involucrata HOM05D007639 ORTHO05D009509 9.4e-42 176.4 184 50.0
FvH4_2g40380 Fragaria vesca HOM05D007639 ORTHO05D009509 9.4e-42 176.4 358 64.0
TWI60G0667 Tripterygium wilfordii HOM05D007639 ORTHO05D009509 3.6e-41 174.5 194 50.0
Prupe.1G585600 Prunus persica HOM05D007639 ORTHO05D009509 8.0e-41 173.3 184 52.2
PGR031G3090 Punica granatum HOM05D007639 ORTHO05D009509 2.3e-40 171.8 189 49.7
CsaV3_3G044860 Cucumis sativus L. HOM05D007639 ORTHO05D009509 5.2e-40 170.6 181 52.5
Sed0007352 Sechium edule HOM05D007639 ORTHO05D009509 2.0e-39 168.7 182 50.5
Gohir.D05G200100 Gossypium hirsutum HOM05D007639 ORTHO05D009509 5.7e-39 167.2 202 46.5
MELO3C003888.2 Cucumis melo HOM05D007639 ORTHO05D009509 1.3e-38 166.0 181 51.4
Gorai.009G205400 Gossypium raimondii HOM05D007639 ORTHO05D009509 1.3e-38 166.0 202 46.0
ClCG05G019220 Citrullus lanatus HOM05D007639 ORTHO05D009509 1.7e-38 165.6 182 51.1
Potri.014G040200 Populus trichocarpa HOM05D007639 ORTHO05D009509 1.7e-38 165.6 193 48.2
Cpa.g.sc207.2 Carica papaya HOM05D007639 ORTHO05D009509 3.7e-38 164.5 191 48.7
Duzib093G1018 Durio zibethinus HOM05D007639 ORTHO05D009509 1.1e-37 162.9 182 48.4
MD15G1444300 Malus domestica HOM05D007639 ORTHO05D009509 2.4e-37 161.8 182 48.9
CSS0043455 Camellia sinensis var. sinensis HOM05D007639 ORTHO05D009509 4.1e-37 161.0 182 46.7
Ciclev10003562m.g Citrus clementina HOM05D007639 ORTHO05D009509 4.1e-37 161.0 185 47.0
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 4.1e-37 161.0 170 50.0
Eucgr.A00484 Eucalyptus grandis HOM05D007639 ORTHO05D009509 9.1e-37 159.8 183 48.1
CSS0026781 Camellia sinensis var. sinensis HOM05D007639 ORTHO05D009509 1.2e-36 159.5 182 46.2
Atru.BG.247.p Acer truncatum HOM05D007639 ORTHO05D009509 1.6e-36 159.1 159 49.7
CiPaw.15G071600 Carya illinoinensis HOM05D007639 ORTHO05D009509 3.5e-36 157.9 202 45.0
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 1.0e-35 156.4 183 45.9
MBI16_g10987_MAGBIO Magnolia biondii HOM05D007639 ORTHO05D009509 1.0e-35 156.4 182 46.2
QL09p028535 Quercus lobata HOM05D007639 ORTHO05D009509 2.9e-35 154.8 190 47.9
DCAR_008778 Daucus carota HOM05D007639 ORTHO05D009509 4.2e-34 151.0 187 44.4
Oeu009601.2 Olea europaea HOM05D007639 ORTHO05D009509 7.2e-34 150.2 188 44.1
Sabra14G0029300 Salix brachista HOM05D007639 ORTHO05D009509 1.6e-33 149.1 193 44.6
TAR625G1528 Trochodendron aralioides HOM05D007639 ORTHO05D009509 2.1e-33 148.7 202 41.6
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 4.7e-33 147.5 164 48.2
Nn4g24966 Nelumbo nucifera HOM05D007639 ORTHO05D009509 1.0e-32 146.4 193 42.0
SalBow7G4426 Salvia bowleyana HOM05D007639 ORTHO05D009509 1.0e-32 146.4 158 48.1
Migut.L00762 Erythranthe guttata HOM05D007639 ORTHO05D009509 1.4e-32 146.0 164 48.8
SalBow7G0144 Salvia bowleyana HOM05D007639 ORTHO05D009509 1.4e-32 146.0 158 48.1
vmacro04826 Vaccinium macrocarpon HOM05D007639 ORTHO05D009509 1.4e-32 146.0 178 46.1
vmacro04988 Vaccinium macrocarpon HOM05D007639 ORTHO05D009509 1.4e-32 146.0 178 46.1
HanXRQChr17g0557061 Helianthus annuus HOM05D007639 ORTHO05D009509 2.3e-32 145.2 159 49.7
THA.LOC104813851 Tarenaya hassleriana HOM05D007639 ORTHO05D009509 5.2e-32 144.1 163 44.8
AUR62022372 Chenopodium quinoa HOM05D007639 ORTHO05D009509 6.8e-32 143.7 179 44.1
SGA_v2.0_scaffold24G10272 Striga asiatica HOM05D007639 ORTHO05D009509 8.8e-32 143.3 164 46.3
Thhalv10006776m.g Eutrema salsugineum HOM05D007639 ORTHO05D009509 1.5e-31 142.5 185 43.8
AT1G19290 Arabidopsis thaliana HOM05D007639 ORTHO05D009509 2.0e-31 142.1 185 42.7
AL1G31880 Arabidopsis lyrata HOM05D007639 ORTHO05D009509 2.6e-31 141.7 185 42.7
AUR62034326 Chenopodium quinoa HOM05D007639 ORTHO05D009509 2.6e-31 141.7 179 43.6
GSVIVG01009638001 Vitis vinifera HOM05D007639 ORTHO05D009509 3.4e-31 141.4 156 47.4
Carub.0001s1888 Capsella rubella HOM05D007639 ORTHO05D009509 4.4e-31 141.0 185 43.8
CARHR019880 Cardamine hirsuta HOM05D007639 ORTHO05D009509 4.4e-31 141.0 159 47.2
BraA08t34924Z Brassica rapa HOM05D007639 ORTHO05D009509 5.7e-31 140.6 189 42.9
Solyc04g079850.2 Solanum lycopersicum HOM05D007639 ORTHO05D009509 5.7e-31 140.6 175 46.9
Peaxi162Scf00057g00149 Petunia axillaris HOM05D000909 ORTHO05D009509 7.5e-31 140.2 159 47.2
A08p29890 Brassica napus HOM05D007639 ORTHO05D009509 1.3e-30 139.4 159 46.5
Aa31LG7G3990 Aethionema arabicum HOM05D007639 ORTHO05D009509 1.7e-30 139.0 185 42.2
BcaC07g38995 Brassica carinata HOM05D007639 ORTHO05D009509 2.2e-30 138.7 159 46.5
BolC8t49556H Brassica oleracea HOM05D007639 ORTHO05D009509 2.2e-30 138.7 159 46.5
C08p19350 Brassica napus HOM05D007639 ORTHO05D009509 4.8e-30 137.5 159 45.9
Sopen04g033420 Solanum pennellii HOM05D007639 ORTHO05D009509 4.8e-30 137.5 175 45.7
Actinidia05689 Actinidia chinensis HOM05D007639 ORTHO05D009509 6.3e-30 137.1 181 42.0
Sp1g17190 Schrenkiella parvula HOM05D007639 ORTHO05D009509 8.3e-30 136.7 203 39.9
Psat3g180320 Pisum sativum HOM05D007639 ORTHO05D009509 1.1e-29 136.3 80 85.0
QL02p007279 Quercus lobata HOM05D007639 ORTHO05D009509 1.1e-29 136.3 189 44.4
BcaB03g12921 Brassica carinata HOM05D007639 ORTHO05D009509 1.4e-29 136.0 179 44.7
Aqoxy6G01002 Aquilegia oxysepala HOM05D007639 ORTHO05D009509 2.4e-29 135.2 190 42.6
PSO675G4860 Papaver somniferum HOM05D007639 ORTHO05D009509 3.1e-29 134.8 178 41.6
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 1.6e-28 132.5 167 43.7
ATR0733G078 Amborella trichopoda HOM05D007639 ORTHO05D009509 2.7e-28 131.7 185 40.5
Glyma.15G197000 Glycine max HOM05D007639 ORTHO05D009509 1.0e-27 129.8 81 84.0
Ah.04g165440 Amaranthus hybridus HOM05D007639 ORTHO05D009509 2.2e-27 128.6 178 41.0
Psat3g155040 Pisum sativum HOM05D000871 ORTHO05D000770 2.2e-27 128.6 77 83.1
CAN.G371.124 Capsicum annuum HOM05D007639 ORTHO05D009509 1.5e-26 125.9 148 46.6
PSO541G4055 Papaver somniferum HOM05D007639 ORTHO05D009509 7.2e-26 123.6 178 38.8
HPP92_006134 Vanilla planifolia HOM05D007639 ORTHO05D009509 4.4e-23 114.4 162 40.1
Os05g0275100 Oryza sativa ssp. japonica HOM05D007639 ORTHO05D009509 8.3e-14 83.6 200 34.5
SEGI_21536 Sequoiadendron giganteum HOM05D007639 ORTHO05D009509 8.3e-14 83.6 182 32.4
Lsat_1_v5_gn_4_37641 Lactuca sativa HOM05D007639 ORTHO05D009509 2.7e-12 78.6 84 48.8
Zm00001eb327830 Zea mays HOM05D007639 ORTHO05D009509 7.8e-12 77.0 157 36.3
COL.COLO4_26382 Corchorus olitorius HOM05D007639 ORTHO05D009509 1.7e-11 75.9 79 55.7
Gohir.A05G197000 Gossypium hirsutum HOM05D007639 ORTHO05D009509 3.0e-11 75.1 79 51.9
Lj4C46T20 Lonicera japonica HOM05D007639 ORTHO05D009509 2.5e-10 72.0 81 45.7
Thecc.08G021400 Theobroma cacao HOM05D007639 ORTHO05D009509 2.5e-10 72.0 78 51.3
CAN.G371.126 Capsicum annuum HOM05D007639 ORTHO05D009509 4.0e-08 64.7 83 42.2
Migut.F01873 Erythranthe guttata HOM05D007358 ORTHO05D009117 5.2e-08 64.3 137 29.9
CDE04G3788 Ceratophyllum demersum HOM05D007639 ORTHO05D009509 6.8e-08 63.9 83 39.8
Gorai.009G176500 Gossypium raimondii HOM05D007956 ORTHO05D010152 8.9e-08 63.5 203 27.1
Nitab4.5_0000110g0140 Nicotiana tabacum HOM05D007639 ORTHO05D009509 1.2e-07 63.2 48 58.3
Lsat_1_v5_gn_3_20581 Lactuca sativa HOM05D007358 ORTHO05D009117 3.4e-07 61.6 204 25.0
Nitab4.5_0006518g0030 Nicotiana tabacum HOM05D007639 ORTHO05D009509 3.4e-07 61.6 48 56.2
HanXRQChr17g0537401 Helianthus annuus HOM05D007358 ORTHO05D009117 4.4e-07 61.2 211 25.1
CDE04G1234 Ceratophyllum demersum HOM05D007358 ORTHO05D009117 7.5e-07 60.5 177 26.6
Eucgr.I01754 Eucalyptus grandis HOM05D007358 ORTHO05D009117 1.3e-06 59.7 149 32.2
Potri.017G071600 Populus trichocarpa HOM05D007358 ORTHO05D009117 3.7e-06 58.2 156 24.4
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 6.4e-06 57.4 126 29.4
MD09G1028300 Malus domestica HOM05D007358 ORTHO05D009117 6.4e-06 57.4 126 28.6


User provided reference genes

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