Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34672 Trifolium pratense HOM05D005895 ORTHO05D007916 0.0e+00 1183.3 593 100.0
Medtr8g069525 Medicago truncatula HOM05D005895 ORTHO05D007916 0.0e+00 1081.2 590 91.9
VMungo0251G0514 Vigna mungo HOM05D005895 ORTHO05D007916 9.3e-291 1003.0 592 84.0
Glyma.08G283100 Glycine max HOM05D005895 ORTHO05D007916 5.6e-288 993.8 594 83.5
arahy.Tifrunner.gnm1.ann1.LQ91H7 Arachis hypogaea HOM05D005895 ORTHO05D007916 1.7e-284 982.2 595 83.5
Lj4g0008127 Lotus japonicus HOM05D005895 ORTHO05D007916 3.8e-284 981.1 593 82.6
Psat0s3772g0040 Pisum sativum HOM05D005895 ORTHO05D007916 3.0e-281 971.5 520 91.9
Lalb_Chr05g0228401 Lupinus albus HOM05D005895 ORTHO05D007916 5.5e-275 950.7 593 81.6
Ca_22578_v3 Cicer arietinum L. HOM05D005895 ORTHO05D007916 1.9e-272 942.2 520 90.2
QL03p058522 Quercus lobata HOM05D005895 ORTHO05D007916 3.6e-266 921.4 592 76.9
Haze_12237 Corylus avellana HOM05D005895 ORTHO05D007916 4.3e-264 914.4 593 76.4
Cfa009199 Carpinus fangiana HOM05D005895 ORTHO05D007916 4.8e-263 911.0 591 76.0
CSS0018548 Camellia sinensis var. sinensis HOM05D005895 ORTHO05D007916 6.3e-263 910.6 597 75.7
CiPaw.05G183400 Carya illinoinensis HOM05D005895 ORTHO05D007916 5.3e-262 907.5 594 75.3
Eucgr.H02516 Eucalyptus grandis HOM05D005895 ORTHO05D007916 3.4e-261 904.8 594 75.6
MELO3C011963.2 Cucumis melo HOM05D005895 ORTHO05D007916 5.9e-261 904.0 593 75.4
COL.COLO4_24246 Corchorus olitorius HOM05D005895 ORTHO05D007916 1.0e-260 903.3 596 75.3
CANSAT01G2589 Cannabis sativa HOM05D005895 ORTHO05D007916 2.9e-260 901.7 596 75.5
Prupe.1G247400 Prunus persica HOM05D005895 ORTHO05D007916 2.9e-260 901.7 595 77.0
Atru.chr11.2133 Acer truncatum HOM05D005895 ORTHO05D007916 5.0e-260 901.0 598 75.3
Potri.010G044900 Populus trichocarpa HOM05D005895 ORTHO05D007916 6.5e-260 900.6 597 75.2
Thecc.02G257400 Theobroma cacao HOM05D005895 ORTHO05D007916 8.5e-260 900.2 592 75.5
Actinidia27801 Actinidia chinensis HOM05D005895 ORTHO05D007916 1.1e-259 899.8 596 75.0
Gorai.012G172600 Gossypium raimondii HOM05D005895 ORTHO05D007916 1.4e-259 899.4 595 75.3
Gohir.A04G136400 Gossypium hirsutum HOM05D005895 ORTHO05D007916 1.9e-259 899.0 595 75.0
Atru.chr11.2117 Acer truncatum HOM05D005895 ORTHO05D007916 2.5e-259 898.7 598 75.1
Ciclev10030909m.g Citrus clementina HOM05D005895 ORTHO05D007916 2.5e-259 898.7 593 75.2
TAR371G0306 Trochodendron aralioides HOM05D005895 ORTHO05D007916 2.3e-257 892.1 593 74.2
CsaV3_5G031240 Cucumis sativus L. HOM05D005895 ORTHO05D007916 3.9e-257 891.3 593 74.5
MBI10_g00734_MAGBIO Magnolia biondii HOM05D005895 ORTHO05D007916 2.6e-256 888.6 591 74.1
MD13G1098000 Malus domestica HOM05D005895 ORTHO05D007916 5.7e-256 887.5 597 75.0
PGR119G2505 Punica granatum HOM05D005895 ORTHO05D007916 5.7e-256 887.5 591 75.1
Cpa.g.sc33.4 Carica papaya HOM05D005895 ORTHO05D007916 9.7e-256 886.7 582 75.8
Sabra10G0023200 Salix brachista HOM05D005895 ORTHO05D007916 4.8e-255 884.4 611 73.3
Sed0023548 Sechium edule HOM05D005895 ORTHO05D007916 8.2e-255 883.6 593 73.9
GSVIVG01004086001 Vitis vinifera HOM05D005895 ORTHO05D007916 1.8e-254 882.5 602 72.9
TWI36G0590 Tripterygium wilfordii HOM05D005895 ORTHO05D007916 4.1e-254 881.3 592 74.2
MD16G1098900 Malus domestica HOM05D005895 ORTHO05D007916 1.5e-253 879.4 597 73.4
RcHm_v2.0_Chr4g0433361 Rosa chinensis HOM05D005895 ORTHO05D007916 2.6e-253 878.6 593 75.9
FvH4_4g25910 Fragaria vesca HOM05D005895 ORTHO05D007916 2.2e-252 875.5 593 75.7
CAN.G7.20 Capsicum annuum HOM05D005895 ORTHO05D007916 5.0e-252 874.4 592 73.5
Gorai.005G179700 Gossypium raimondii HOM05D005895 ORTHO05D007916 7.2e-251 870.5 594 73.2
Gohir.D04G179500 Gossypium hirsutum HOM05D005895 ORTHO05D007916 1.6e-250 869.4 576 75.2
Solyc04g025540.3 Solanum lycopersicum HOM05D005895 ORTHO05D007916 3.6e-250 868.2 544 77.4
vmacro01130 Vaccinium macrocarpon HOM05D005895 ORTHO05D007916 6.1e-250 867.5 636 69.7
THA.LOC104822982 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 1.0e-249 866.7 599 72.5
Carub.0002s1729 Capsella rubella HOM05D005895 ORTHO05D007916 2.3e-249 865.5 599 72.5
FAN07G1086 Fragaria x ananassa HOM05D005895 ORTHO05D007916 3.0e-249 865.1 593 75.0
FAN12G1268 Fragaria x ananassa HOM05D005895 ORTHO05D007916 3.0e-249 865.1 593 75.2
AL2G29960 Arabidopsis lyrata HOM05D005895 ORTHO05D007916 5.2e-249 864.4 597 72.5
Lj6A811T72 Lonicera japonica HOM05D005895 ORTHO05D007916 1.1e-248 863.2 597 72.2
Sopen04g012770 Solanum pennellii HOM05D005895 ORTHO05D007916 1.1e-248 863.2 544 76.8
FAN12G2739 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.5e-248 862.8 592 74.8
AT1G70570 Arabidopsis thaliana HOM05D005895 ORTHO05D007916 4.4e-248 861.3 599 72.8
arahy.Tifrunner.gnm1.ann1.0I87EX Arachis hypogaea HOM05D005895 ORTHO05D007916 7.4e-248 860.5 522 83.1
Sp5g25720 Schrenkiella parvula HOM05D005895 ORTHO05D007916 7.4e-248 860.5 597 72.2
Aa31LG4G10380 Aethionema arabicum HOM05D005895 ORTHO05D007916 9.7e-248 860.1 603 71.5
CARHR063780 Cardamine hirsuta HOM05D005895 ORTHO05D007916 3.7e-247 858.2 595 72.1
BcaB05g24593 Brassica carinata HOM05D005895 ORTHO05D007916 6.3e-247 857.4 603 71.6
A02p16660 Brassica napus HOM05D005895 ORTHO05D007916 3.1e-246 855.1 606 71.1
DCAR_007061 Daucus carota HOM05D005895 ORTHO05D007916 4.1e-246 854.7 591 72.8
BraA02t06722Z Brassica rapa HOM05D005895 ORTHO05D007916 1.2e-245 853.2 605 71.2
SalBow8G2958 Salvia bowleyana HOM05D005895 ORTHO05D007916 5.9e-245 850.9 596 71.0
FAN17G0264 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.3e-244 849.7 624 71.2
C02p27920 Brassica napus HOM05D005895 ORTHO05D007916 3.2e-243 845.1 599 71.0
BolC2t08837H Brassica oleracea HOM05D005895 ORTHO05D007916 3.2e-243 845.1 599 71.0
Cc04_g11160 Coffea canephora HOM05D005895 ORTHO05D007916 9.4e-243 843.6 542 75.8
Migut.E00194 Erythranthe guttata HOM05D005895 ORTHO05D007916 1.2e-242 843.2 593 71.3
AUR62024296 Chenopodium quinoa HOM05D005895 ORTHO05D007916 1.6e-242 842.8 595 71.9
Hund06020 Selenicereus undatus HOM05D005895 ORTHO05D007916 2.1e-242 842.4 550 74.0
Thhalv10018314m.g Eutrema salsugineum HOM05D005895 ORTHO05D007916 3.6e-242 841.6 603 70.6
ECA233G5390 Erigeron canadensis HOM05D005895 ORTHO05D007916 1.0e-241 840.1 530 76.6
PSO017G6602 Papaver somniferum HOM05D005895 ORTHO05D007916 3.0e-241 838.6 597 70.2
Phvul.003G063900 Phaseolus vulgaris HOM05D005895 ORTHO05D007916 3.0e-241 838.6 463 87.3
AUR62005446 Chenopodium quinoa HOM05D005895 ORTHO05D007916 1.5e-240 836.3 595 70.3
PSO478G2260 Papaver somniferum HOM05D005895 ORTHO05D007916 1.5e-240 836.3 596 70.1
Sc04g0009430 Simmondsia chinensis HOM05D005895 ORTHO05D007916 1.1e-238 830.1 577 72.1
BcaC03g15207 Brassica carinata HOM05D005895 ORTHO05D007916 1.8e-238 829.3 586 71.2
Ah.03g133150 Amaranthus hybridus HOM05D005895 ORTHO05D007916 9.1e-238 827.0 603 69.2
EL10Ac6g13787 Beta vulgaris HOM05D005895 ORTHO05D007916 2.7e-237 825.5 615 69.6
Aqoxy5G03807 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 3.8e-236 821.6 578 71.8
FAN22G0931 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.5e-235 819.7 627 69.7
Nitab4.5_0006332g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 1.9e-235 819.3 591 69.7
HanXRQChr08g0208071 Helianthus annuus HOM05D005895 ORTHO05D007916 5.5e-235 817.8 547 73.9
Gohir.D02G159600 Gossypium hirsutum HOM05D005895 ORTHO05D007916 1.5e-232 809.7 593 70.5
ClCG05G025660 Citrullus lanatus HOM05D005895 ORTHO05D007916 2.4e-230 802.4 553 72.5
HPP92_003081 Vanilla planifolia HOM05D005895 ORTHO05D007916 4.5e-229 798.1 589 68.6
Manes.12G024300 Manihot esculenta HOM05D005895 ORTHO05D007916 6.5e-228 794.3 523 75.5
Nn4g22655 Nelumbo nucifera HOM05D005895 ORTHO05D007916 9.5e-227 790.4 599 67.3
Aqoxy3G01161 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 8.0e-226 787.3 535 71.6
Nitab4.5_0000370g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 7.5e-224 780.8 591 66.8
Os02g0131200 Oryza sativa ssp. japonica HOM05D005895 ORTHO05D007916 1.3e-220 770.0 557 70.0
Manes.13G025800 Manihot esculenta HOM05D005895 ORTHO05D007916 1.7e-220 769.6 527 74.2
Zm00001eb231230 Zea mays HOM05D005895 ORTHO05D007916 6.6e-220 767.7 597 66.7
ATR0585G083 Amborella trichopoda HOM05D005895 ORTHO05D007916 5.6e-219 764.6 590 66.8
Lsat_1_v5_gn_8_150700 Lactuca sativa HOM05D005895 ORTHO05D007916 8.0e-218 760.8 600 65.8
MSTRG.2417 Avicennia marina HOM05D005895 ORTHO05D007916 4.7e-210 734.9 444 79.7
Sed0009772 Sechium edule HOM05D005895 ORTHO05D007916 1.4e-206 723.4 462 76.2
THA.LOC104818151 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 3.3e-203 712.2 498 71.9
Gohir.A03G136300 Gossypium hirsutum HOM05D005895 ORTHO05D007916 2.0e-200 703.0 496 70.6
Duzib251G0200 Durio zibethinus HOM05D005895 ORTHO05D007916 2.6e-200 702.6 590 62.5
Oeu059911.1 Olea europaea HOM05D005895 ORTHO05D007916 3.4e-200 702.2 576 64.8
unitig_52.g17177 Utricularia gibba HOM05D005895 ORTHO05D007916 9.5e-195 684.1 519 66.1
Mapoly0129s0050 Marchantia polymorpha HOM05D005895 ORTHO05D007916 7.6e-192 674.5 510 66.1
Pp3c12_14340 Physcomitrium patens HOM05D005895 ORTHO05D007916 2.2e-191 672.9 505 67.1
Zm00001eb209010 Zea mays HOM05D005895 ORTHO05D007916 2.4e-185 652.9 550 61.8
Peaxi162Scf01242g00143 Petunia axillaris HOM05D005895 ORTHO05D007916 3.9e-180 635.6 423 73.8
SMO119G0060 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 2.1e-178 629.8 507 64.9
Dinv24803 Davidia involucrata HOM05D005895 ORTHO05D007916 4.5e-168 595.5 388 74.7
AagrBONN_evm.TU.Sc2ySwM_368.1304 Anthoceros agrestis HOM05D005895 ORTHO05D007916 1.4e-161 573.9 447 64.0
Pp3c10_19590 Physcomitrium patens HOM05D005895 ORTHO05D007916 6.7e-124 448.7 372 60.2
SHI17741 Sapria himalayana HOM05D000002 ORTHO05D000001 2.0e-91 340.9 434 45.4
FAN18G3006 Fragaria x ananassa HOM05D005895 ORTHO05D007916 3.0e-87 327.0 200 78.5
CBR_g37586 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-65 254.6 274 51.5
SEGI_05407 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 1.3e-53 215.3 141 73.8
CBR_g37584 Chara braunii HOM05D000019 ORTHO05D000048 6.2e-53 213.0 208 52.4
Peaxi162Scf02256g00001 Petunia axillaris HOM05D005895 ORTHO05D007916 7.6e-51 206.1 143 72.0
SEGI_24305 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 1.3e-42 178.7 100 79.0
BcaB08g34808 Brassica carinata HOM05D005895 ORTHO05D007916 8.2e-37 159.5 102 73.5
SEGI_08481 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 5.9e-35 153.3 102 71.6
DCAR_028023 Daucus carota HOM05D005895 ORTHO05D007916 1.7e-26 125.2 90 70.0
Ah.07g201790 Amaranthus hybridus HOM05D005895 ORTHO05D007916 5.5e-25 120.2 66 80.3
CSS0038190 Camellia sinensis var. sinensis HOM05D033929 ORTHO05D026310 3.9e-23 114.0 124 51.6
Rhsim12G0041200 Rhododendron simsii HOM05D005895 ORTHO05D007916 7.4e-22 109.8 76 68.4
SMO163G0072 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 6.3e-21 106.7 174 40.8
BcaB05g24594 Brassica carinata HOM05D005895 ORTHO05D012801 7.0e-20 103.2 106 53.8
A02p16670 Brassica napus HOM05D005895 ORTHO05D012801 1.1e-17 95.9 64 73.4
BraA02t06723Z Brassica rapa HOM05D005895 ORTHO05D012801 1.1e-17 95.9 64 73.4
C02p27930 Brassica napus HOM05D005895 ORTHO05D012801 1.6e-16 92.0 68 67.6
BolC2t08838H Brassica oleracea HOM05D005895 ORTHO05D012801 1.6e-16 92.0 68 67.6
Gorai.012G172500 Gossypium raimondii HOM05D005895 ORTHO05D007916 5.2e-15 87.0 54 75.9
DCAR_029453 Daucus carota HOM05D005895 ORTHO05D007916 8.8e-15 86.3 68 64.7
Actinidia08142 Actinidia chinensis HOM05D005895 ORTHO05D026310 1.5e-09 68.9 129 40.3
SEGI_38231 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 9.7e-06 56.2 38 68.4


User provided reference genes

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