Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 2.9e-115 418.7 231 100.0
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 5.5e-106 387.9 231 91.3
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 1.5e-103 379.8 231 90.0
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 3.2e-90 335.5 231 81.4
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 6.8e-88 327.8 228 78.5
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 2.2e-86 322.8 230 79.6
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 1.7e-83 313.2 250 74.0
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 3.8e-83 312.0 248 74.2
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 6.5e-83 311.2 230 77.0
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 5.5e-82 308.1 252 70.2
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 6.1e-81 304.7 221 75.6
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 3.0e-80 302.4 222 74.8
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 1.5e-79 300.1 228 71.1
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 1.7e-78 296.6 259 67.6
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 3.7e-78 295.4 223 69.1
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 1.1e-77 293.9 223 71.7
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 1.4e-77 293.5 229 71.6
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.8e-77 293.1 234 68.8
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 1.8e-77 293.1 228 72.4
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 3.1e-77 292.4 233 70.4
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 7.0e-77 291.2 227 72.2
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 9.2e-77 290.8 231 70.1
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 2.7e-76 289.3 224 70.5
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 4.5e-76 288.5 224 70.1
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 7.8e-76 287.7 220 73.2
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 7.8e-76 287.7 223 69.5
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 1.7e-75 286.6 226 69.9
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 5.0e-75 285.0 221 70.1
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 6.6e-75 284.6 222 68.9
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 6.6e-75 284.6 222 63.5
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 6.6e-75 284.6 222 67.1
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 1.5e-74 283.5 233 67.4
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 1.9e-74 283.1 228 70.6
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 2.5e-74 282.7 229 65.9
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 2.5e-74 282.7 226 69.0
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 4.3e-74 282.0 222 62.2
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 5.6e-74 281.6 225 69.8
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 5.6e-74 281.6 227 67.0
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 9.5e-74 280.8 221 62.0
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 1.2e-73 280.4 222 71.6
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 1.6e-73 280.0 225 68.9
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 1.6e-73 280.0 228 68.9
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 2.8e-73 279.3 228 67.1
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 2.8e-73 279.3 223 65.5
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 3.6e-73 278.9 230 66.5
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 3.6e-73 278.9 228 70.6
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 4.7e-73 278.5 251 59.4
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 4.7e-73 278.5 222 72.1
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 1.0e-72 277.3 233 59.2
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 1.0e-72 277.3 226 66.4
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 1.4e-72 276.9 225 60.0
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 1.4e-72 276.9 223 60.5
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 1.8e-72 276.6 222 70.7
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 2.3e-72 276.2 231 60.2
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 5.2e-72 275.0 228 60.5
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 8.9e-72 274.2 222 70.7
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 2.0e-71 273.1 229 64.2
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 2.0e-71 273.1 229 65.1
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 2.6e-71 272.7 229 59.8
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 2.6e-71 272.7 229 59.8
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 2.6e-71 272.7 232 65.5
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 2.6e-71 272.7 229 59.8
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 3.4e-71 272.3 228 66.7
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 5.8e-71 271.6 227 59.9
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 7.5e-71 271.2 229 61.6
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 9.8e-71 270.8 226 61.1
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 9.8e-71 270.8 224 61.6
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 1.7e-70 270.0 231 60.2
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 1.7e-70 270.0 159 78.6
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 2.9e-70 269.2 225 58.7
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 2.9e-70 269.2 226 62.4
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 4.9e-70 268.5 227 59.5
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 6.4e-70 268.1 229 62.0
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 6.4e-70 268.1 223 60.1
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 8.3e-70 267.7 225 62.2
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 8.3e-70 267.7 225 62.2
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.1e-69 267.3 228 57.9
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 1.1e-69 267.3 225 59.6
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.1e-69 267.3 222 67.6
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 1.4e-69 266.9 225 59.6
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 2.4e-69 266.2 224 67.4
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 3.2e-69 265.8 221 66.5
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 5.4e-69 265.0 232 64.7
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 5.4e-69 265.0 238 64.3
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 9.2e-69 264.2 222 61.7
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 9.2e-69 264.2 227 56.8
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 9.2e-69 264.2 221 67.0
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 1.2e-68 263.8 227 60.4
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 2.7e-68 262.7 224 61.6
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 2.7e-68 262.7 222 60.4
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.6e-68 261.9 226 59.7
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 1.0e-67 260.8 248 54.0
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 1.0e-67 260.8 228 67.1
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.0e-67 260.8 227 65.2
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 2.3e-67 259.6 225 64.4
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.0e-67 258.5 226 59.3
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 8.6e-67 257.7 163 73.0
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 8.6e-67 257.7 226 58.4
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 5.6e-66 255.0 219 56.2
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 5.6e-66 255.0 231 61.9
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 9.5e-66 254.2 229 59.0
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 1.2e-65 253.8 229 64.6
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 3.6e-65 252.3 225 60.0
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 4.7e-65 251.9 212 65.1
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 8.0e-65 251.1 227 62.1
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 1.4e-64 250.4 223 65.5
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 2.3e-64 249.6 167 70.7
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 4.0e-64 248.8 273 51.3
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 4.0e-64 248.8 220 63.6
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 2.0e-63 246.5 268 55.2
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 5.8e-63 245.0 219 64.4
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 9.8e-63 244.2 216 57.4
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 1.3e-62 243.8 228 60.5
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 2.2e-62 243.0 255 53.7
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 2.9e-62 242.7 140 85.7
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 4.9e-62 241.9 224 64.3
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 6.4e-62 241.5 180 64.4
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 4.1e-61 238.8 203 60.1
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 5.4e-61 238.4 200 69.0
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 5.4e-61 238.4 233 59.2
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 7.0e-61 238.0 227 53.3
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 7.0e-61 238.0 227 53.3
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 7.0e-61 238.0 227 53.3
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.7e-60 236.1 227 52.9
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 2.7e-60 236.1 233 55.8
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 4.6e-60 235.3 239 54.0
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 1.3e-59 233.8 240 55.4
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.0e-59 232.6 227 56.4
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 3.9e-59 232.3 247 53.8
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 8.6e-59 231.1 137 78.8
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 1.1e-58 230.7 224 53.1
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 2.5e-58 229.6 226 54.4
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 7.3e-58 228.0 219 56.6
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 9.5e-58 227.6 143 74.1
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 2.6e-55 219.5 140 75.7
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 1.2e-52 210.7 133 72.2
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 7.8e-52 208.0 272 45.2
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 2.3e-51 206.5 235 51.1
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 8.6e-51 204.5 146 69.2
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.2e-49 200.7 140 67.1
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 8.1e-49 198.0 181 59.1
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.9e-46 188.7 135 65.2
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 6.0e-44 181.8 127 70.1
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 8.7e-43 177.9 144 57.6
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 2.5e-42 176.4 130 64.6
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 3.3e-42 176.0 138 59.4
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 2.0e-31 140.2 88 71.6
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 9.9e-31 137.9 131 58.8
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.9e-30 135.6 233 38.2
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 8.4e-30 134.8 94 68.1
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 2.7e-28 129.8 91 70.3
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 2.2e-22 110.2 112 50.0
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 8.4e-22 108.2 239 29.3
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 6.0e-20 102.1 124 42.7
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 1.3e-17 94.4 79 58.2
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 6.2e-17 92.0 159 33.3
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 5.3e-16 89.0 102 40.2
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 5.8e-15 85.5 129 34.1
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 5.8e-15 85.5 100 66.0
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 8.4e-14 81.6 141 29.8
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 4.2e-13 79.3 77 53.2
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 2.3e-11 73.6 86 61.6
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 1.9e-10 70.5 86 64.0
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.9e-10 70.5 97 56.7
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 2.5e-10 70.1 88 60.2
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 5.7e-10 68.9 69 49.3
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 2.0e-07 60.5 56 51.8


User provided reference genes

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