Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34542 Trifolium pratense HOM05D005726 ORTHO05D001733 2.6e-62 241.9 124 100.0
Medtr3g113930 Medicago truncatula HOM05D005726 ORTHO05D001733 8.4e-53 210.3 121 84.3
Lj1g0006182 Lotus japonicus HOM05D005726 ORTHO05D001733 3.2e-36 155.2 121 67.8
Glyma.04G024200 Glycine max HOM05D005726 ORTHO05D001733 4.7e-35 151.4 122 69.7
Phvul.009G017000 Phaseolus vulgaris HOM05D005726 ORTHO05D001733 4.7e-35 151.4 121 68.6
VMungo1309G2498 Vigna mungo HOM05D005726 ORTHO05D001733 2.8e-32 142.1 121 66.9
Lalb_Chr11g0061921 Lupinus albus HOM05D005726 ORTHO05D001733 1.8e-31 139.4 118 61.9
Thecc.08G044700 Theobroma cacao HOM05D005726 ORTHO05D001733 9.4e-20 100.5 118 50.0
Gorai.010G004200 Gossypium raimondii HOM05D005726 ORTHO05D001733 3.0e-18 95.5 118 50.8
Manes.05G147300 Manihot esculenta HOM05D005726 ORTHO05D001733 5.2e-18 94.7 118 44.9
Gohir.A06G004000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 6.8e-18 94.4 118 50.0
Gohir.D06G006900 Gossypium hirsutum HOM05D005726 ORTHO05D001733 6.8e-18 94.4 118 50.0
Cpa.g.sc26.44 Carica papaya HOM05D005726 ORTHO05D001733 1.3e-16 90.1 118 44.9
CANSAT01G1229 Cannabis sativa HOM05D005726 ORTHO05D001733 2.8e-16 89.0 122 41.8
Potri.002G022100 Populus trichocarpa HOM05D005726 ORTHO05D001733 8.3e-16 87.4 118 42.4
TWI56G0219 Tripterygium wilfordii HOM05D005726 ORTHO05D001733 9.1e-15 84.0 122 41.8
RcHm_v2.0_Chr6g0302871 Rosa chinensis HOM05D005726 ORTHO05D001733 2.7e-14 82.4 118 38.1
Sed0021833 Sechium edule HOM05D005726 ORTHO05D001733 1.3e-13 80.1 119 38.7
COL.COLO4_17253 Corchorus olitorius HOM05D005726 ORTHO05D001733 2.2e-13 79.3 115 40.9
THA.LOC104821582 Tarenaya hassleriana HOM05D005726 ORTHO05D001733 2.2e-13 79.3 117 38.5
QL02p011637 Quercus lobata HOM05D005726 ORTHO05D001733 2.9e-13 79.0 117 41.0
Thecc.02G067200 Theobroma cacao HOM05D005726 ORTHO05D001733 8.5e-13 77.4 121 40.5
Atru.chr13.290 Acer truncatum HOM05D005726 ORTHO05D001733 4.2e-12 75.1 114 40.4
MD08G1013100 Malus domestica HOM05D005726 ORTHO05D001733 9.4e-12 73.9 120 39.2
Atru.chr5.3224 Acer truncatum HOM05D005726 ORTHO05D001733 1.6e-11 73.2 113 39.8
Cfa013952 Carpinus fangiana HOM05D005726 ORTHO05D001733 1.6e-11 73.2 118 38.1
Ciclev10029543m.g Citrus clementina HOM05D005726 ORTHO05D001733 1.6e-11 73.2 114 42.1
Duzib132G0889 Durio zibethinus HOM05D005726 ORTHO05D001733 2.1e-11 72.8 112 39.3
RcHm_v2.0_Chr6g0245271 Rosa chinensis HOM05D005726 ORTHO05D001733 2.1e-11 72.8 112 38.4
Eucgr.F00586 Eucalyptus grandis HOM05D005726 ORTHO05D001733 2.7e-11 72.4 114 37.7
MD10G1118100 Malus domestica HOM05D005726 ORTHO05D001733 3.6e-11 72.0 114 42.1
Nitab4.5_0002561g0020 Nicotiana tabacum HOM05D005726 ORTHO05D001733 3.6e-11 72.0 115 36.5
CiPaw.07G149600 Carya illinoinensis HOM05D005726 ORTHO05D001733 4.7e-11 71.6 116 41.4
Ciclev10029854m.g Citrus clementina HOM05D005726 ORTHO05D001733 4.7e-11 71.6 114 41.2
Sopen04g035070 Solanum pennellii HOM05D005726 ORTHO05D001733 6.1e-11 71.2 115 35.7
Prupe.8G160400 Prunus persica HOM05D005726 ORTHO05D001733 8.0e-11 70.9 118 39.0
BcaB07g31777 Brassica carinata HOM05D005726 ORTHO05D001733 1.0e-10 70.5 115 37.4
MBI05_g33718_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 1.0e-10 70.5 118 37.3
Nn1g05896 Nelumbo nucifera HOM05D005726 ORTHO05D001733 1.0e-10 70.5 122 37.7
PGSC0003DMG400009937 Solanum tuberosum HOM05D005726 ORTHO05D001733 1.0e-10 70.5 115 34.8
TAR625G1501 Trochodendron aralioides HOM05D005726 ORTHO05D001733 1.4e-10 70.1 118 38.1
Cfa005182 Carpinus fangiana HOM05D005726 ORTHO05D001733 1.8e-10 69.7 119 37.8
Ciclev10003161m.g Citrus clementina HOM05D005726 ORTHO05D001733 1.8e-10 69.7 114 36.8
Gohir.A12G039400 Gossypium hirsutum HOM05D005726 ORTHO05D001733 1.8e-10 69.7 112 40.2
Potri.009G129301 Populus trichocarpa HOM05D005726 ORTHO05D001733 1.8e-10 69.7 115 36.5
BolC9t54179H Brassica oleracea HOM05D005726 ORTHO05D001733 2.3e-10 69.3 117 36.8
CARHR284740 Cardamine hirsuta HOM05D005726 ORTHO05D001733 2.3e-10 69.3 121 33.1
BcaC04g23031 Brassica carinata HOM05D005726 ORTHO05D001733 3.0e-10 68.9 117 36.8
C09p12890 Brassica napus HOM05D005726 ORTHO05D001733 3.0e-10 68.9 117 36.8
Haze_02200 Corylus avellana HOM05D005726 ORTHO05D001733 4.0e-10 68.6 119 36.1
QL11p047517 Quercus lobata HOM05D005726 ORTHO05D001733 4.0e-10 68.6 118 39.8
AT5G42146 Arabidopsis thaliana HOM05D005726 ORTHO05D001733 5.2e-10 68.2 115 35.7
DCAR_003698 Daucus carota HOM05D005726 ORTHO05D001733 5.2e-10 68.2 112 35.7
Gohir.D12G033000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 5.2e-10 68.2 112 39.3
Gorai.008G033800 Gossypium raimondii HOM05D005726 ORTHO05D001733 5.2e-10 68.2 112 39.3
AL8G19700 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 6.8e-10 67.8 123 35.0
AL8G19720 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 6.8e-10 67.8 123 35.0
A09p10920 Brassica napus HOM05D005726 ORTHO05D001733 6.8e-10 67.8 117 34.2
BraA09t36732Z Brassica rapa HOM05D005726 ORTHO05D001733 6.8e-10 67.8 117 34.2
MD05G1115600 Malus domestica HOM05D005726 ORTHO05D001733 8.8e-10 67.4 114 41.2
Carub.0008s0720 Capsella rubella HOM05D005726 ORTHO05D001733 1.2e-09 67.0 115 36.5
Nn5g30142 Nelumbo nucifera HOM05D005726 ORTHO05D001733 1.5e-09 66.6 118 39.8
Haze_22635 Corylus avellana HOM05D005726 ORTHO05D001733 2.6e-09 65.9 121 34.7
ATR0810G150 Amborella trichopoda HOM05D005726 ORTHO05D001733 3.4e-09 65.5 118 36.4
Eucgr.J01788 Eucalyptus grandis HOM05D003064 ORTHO05D001733 9.8e-09 63.9 117 33.3
Lj4g0016221 Lotus japonicus HOM05D018548 ORTHO05D020752 9.8e-09 63.9 106 44.3
Migut.N01283 Erythranthe guttata HOM05D005726 ORTHO05D001733 1.3e-08 63.5 114 39.5
CiPaw.13G172000 Carya illinoinensis HOM05D003064 ORTHO05D001733 1.7e-08 63.2 112 34.8
Sp2g14650 Schrenkiella parvula HOM05D005726 ORTHO05D001733 2.2e-08 62.8 119 34.5
Ah.11g039720 Amaranthus hybridus HOM05D005726 ORTHO05D001733 4.9e-08 61.6 120 32.5
C02p51810 Brassica napus HOM05D005726 ORTHO05D001733 6.3e-08 61.2 117 35.9
Oeu037538.1 Olea europaea HOM05D005726 ORTHO05D001733 6.3e-08 61.2 112 32.1
TAR376G0138 Trochodendron aralioides HOM05D005726 ORTHO05D001733 6.3e-08 61.2 103 40.8
BolC8t51740H Brassica oleracea HOM05D007714 ORTHO05D009659 1.1e-07 60.5 113 33.6
Cpa.g.sc37.193 Carica papaya HOM05D005726 ORTHO05D001733 1.1e-07 60.5 113 36.3
Sc15g0004980 Simmondsia chinensis HOM05D003064 ORTHO05D001733 1.1e-07 60.5 114 35.1
A02p33660 Brassica napus HOM05D005726 ORTHO05D001733 1.4e-07 60.1 115 33.9
BraA02t08386Z Brassica rapa HOM05D005726 ORTHO05D001733 1.4e-07 60.1 115 33.9
CANSAT25G0582 Cannabis sativa HOM05D005726 ORTHO05D001733 1.4e-07 60.1 89 40.4
Potri.004G167800 Populus trichocarpa HOM05D005726 ORTHO05D001733 1.4e-07 60.1 112 33.0
BcaB08g34968 Brassica carinata HOM05D007714 ORTHO05D009659 2.4e-07 59.3 113 32.7
BcaC03g17246 Brassica carinata HOM05D005726 ORTHO05D001733 2.4e-07 59.3 117 35.0
BcaC07g41170 Brassica carinata HOM05D007714 ORTHO05D009659 2.4e-07 59.3 113 33.6
C08p41770 Brassica napus HOM05D007714 ORTHO05D009659 2.4e-07 59.3 113 33.6
BolC2t11266H Brassica oleracea HOM05D005726 ORTHO05D001733 2.4e-07 59.3 117 35.0
CsaV3_2G029540 Cucumis sativus L. HOM05D005726 ORTHO05D001733 2.4e-07 59.3 120 34.2
Manes.04G078400 Manihot esculenta HOM05D005726 ORTHO05D001733 2.4e-07 59.3 94 38.3
Psat7g092800 Pisum sativum HOM05D018548 ORTHO05D020752 2.4e-07 59.3 107 39.3
RcHm_v2.0_Chr5g0081431 Rosa chinensis HOM05D003064 ORTHO05D001733 2.4e-07 59.3 113 35.4
Sed0013832 Sechium edule HOM05D007714 ORTHO05D009659 2.4e-07 59.3 116 31.0
BraA09t41234Z Brassica rapa HOM05D007714 ORTHO05D009659 3.1e-07 58.9 113 33.6
Oeu027542.1 Olea europaea HOM05D005726 ORTHO05D001733 3.1e-07 58.9 112 33.0
THA.LOC104824780 Tarenaya hassleriana HOM05D007714 ORTHO05D009659 3.1e-07 58.9 114 35.1
CiPaw.05G077000 Carya illinoinensis HOM05D005726 ORTHO05D001733 4.1e-07 58.5 112 36.6
MD11G1012600 Malus domestica HOM05D003064 ORTHO05D001733 4.1e-07 58.5 114 33.3
ClCG02G004310 Citrullus lanatus HOM05D007714 ORTHO05D009659 5.4e-07 58.2 116 31.9
Gohir.D08G022500 Gossypium hirsutum HOM05D003064 ORTHO05D001733 5.4e-07 58.2 114 32.5
Gorai.004G017800 Gossypium raimondii HOM05D003064 ORTHO05D001733 5.4e-07 58.2 114 32.5
SHI08068 Sapria himalayana HOM05D005726 ORTHO05D001733 5.4e-07 58.2 122 31.1
FAN21G3633 Fragaria x ananassa HOM05D003064 ORTHO05D001733 7.0e-07 57.8 111 32.4
Gohir.A08G012000 Gossypium hirsutum HOM05D003064 ORTHO05D001733 7.0e-07 57.8 114 32.5
Sed0014046 Sechium edule HOM05D005726 ORTHO05D001733 7.0e-07 57.8 117 35.0
VMungo0647G0318 Vigna mungo HOM05D003064 ORTHO05D001733 7.0e-07 57.8 114 31.6
A09p58470 Brassica napus HOM05D007714 ORTHO05D009659 9.2e-07 57.4 113 32.7
FAN16G3363 Fragaria x ananassa HOM05D003064 ORTHO05D001733 9.2e-07 57.4 111 32.4
Glyma.02G258600 Glycine max HOM05D003064 ORTHO05D001733 9.2e-07 57.4 114 30.7
Glyma.14G053000 Glycine max HOM05D003064 ORTHO05D001733 9.2e-07 57.4 114 31.6
Prupe.6G010700 Prunus persica HOM05D003064 ORTHO05D001733 9.2e-07 57.4 114 31.6
THA.LOC104811059 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 9.2e-07 57.4 118 33.1
Aa31LG7G15510 Aethionema arabicum HOM05D007714 ORTHO05D009659 1.2e-06 57.0 114 32.5
Cfa005180 Carpinus fangiana HOM05D005726 ORTHO05D001733 1.2e-06 57.0 121 38.8
Duzib150G0559 Durio zibethinus HOM05D003064 ORTHO05D001733 1.2e-06 57.0 119 33.6
Glyma.08G079700 Glycine max HOM05D018548 ORTHO05D020752 1.2e-06 57.0 104 40.4
Haze_22989 Corylus avellana HOM05D003064 ORTHO05D001733 1.6e-06 56.6 95 34.7
TPR.G32947 Trifolium pratense HOM05D003064 ORTHO05D001733 1.6e-06 56.6 114 32.5
CsaV3_7G000790 Cucumis sativus L. HOM05D007714 ORTHO05D009659 2.0e-06 56.2 116 30.2
FAN25G3035 Fragaria x ananassa HOM05D003064 ORTHO05D001733 2.0e-06 56.2 111 32.4
PSO170G6562 Papaver somniferum HOM05D005726 ORTHO05D001733 2.0e-06 56.2 122 32.0
Thecc.09G214300 Theobroma cacao HOM05D003064 ORTHO05D001733 2.0e-06 56.2 118 33.9
Thhalv10015257m.g Eutrema salsugineum HOM05D005726 ORTHO05D001733 2.7e-06 55.8 116 31.9
LjContig00357g0022496 Lotus japonicus HOM05D003064 ORTHO05D001733 2.7e-06 55.8 111 31.5
Thecc.02G067300 Theobroma cacao HOM05D007714 ORTHO05D009659 2.7e-06 55.8 115 31.3
FvH4_3g44730 Fragaria vesca HOM05D003064 ORTHO05D001733 3.5e-06 55.5 111 31.5
MD05G1115400 Malus domestica HOM05D007714 ORTHO05D009659 3.5e-06 55.5 112 28.6
TPR.G23812 Trifolium pratense HOM05D018548 ORTHO05D020752 3.5e-06 55.5 103 40.8
MBI05_g46327_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 4.5e-06 55.1 100 37.0
Prupe.1G365100 Prunus persica HOM05D005726 ORTHO05D001733 4.5e-06 55.1 118 34.7
EL10Ac1g02194 Beta vulgaris HOM05D005726 ORTHO05D001733 5.9e-06 54.7 120 32.5
Sc09g0000290 Simmondsia chinensis HOM05D003064 ORTHO05D001733 5.9e-06 54.7 117 32.5
Carub.0004s0020 Capsella rubella HOM05D007714 ORTHO05D009659 7.7e-06 54.3 116 31.9
PGR031G2508 Punica granatum HOM05D005726 ORTHO05D001733 7.7e-06 54.3 120 33.3


User provided reference genes

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