Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34497 Trifolium pratense HOM05D007498 ORTHO05D009384 8.7e-219 763.5 415 100.0
Medtr3g080260 Medicago truncatula HOM05D007498 ORTHO05D009384 5.3e-192 674.5 412 87.6
Lj6g0022389 Lotus japonicus HOM05D007498 ORTHO05D009384 1.2e-167 593.6 403 79.9
Phvul.006G012811 Phaseolus vulgaris HOM05D007498 ORTHO05D009384 1.5e-162 576.6 404 75.2
Dinv08726 Davidia involucrata HOM05D007498 ORTHO05D009384 2.1e-132 476.5 395 61.5
QL08p030918 Quercus lobata HOM05D007498 ORTHO05D009384 1.8e-131 473.4 394 62.9
Manes.12G070200 Manihot esculenta HOM05D007498 ORTHO05D009384 3.7e-129 465.7 394 60.2
CSS0038240 Camellia sinensis var. sinensis HOM05D007498 ORTHO05D009384 1.1e-128 464.2 362 65.2
CiPaw.03G155900 Carya illinoinensis HOM05D007498 ORTHO05D009384 1.6e-127 460.3 403 58.6
COL.COLO4_21864 Corchorus olitorius HOM05D007498 ORTHO05D009384 3.5e-127 459.1 410 57.8
TWI18G0826 Tripterygium wilfordii HOM05D007498 ORTHO05D009384 6.0e-127 458.4 403 60.0
Hma1.2p1_2381F.1_g320980 Hydrangea macrophylla HOM05D007498 ORTHO05D009384 3.9e-126 455.7 370 62.4
Hma1.2p1_0445F.1_g154420 Hydrangea macrophylla HOM05D007498 ORTHO05D009384 6.6e-126 454.9 370 62.2
Thecc.01G181300 Theobroma cacao HOM05D007498 ORTHO05D009384 8.6e-126 454.5 403 57.3
Psat5g106880 Pisum sativum HOM05D007498 ORTHO05D009384 1.1e-125 454.1 291 85.2
CANSAT64G1398 Cannabis sativa HOM05D007498 ORTHO05D009384 2.8e-124 449.5 395 58.5
GSVIVG01030496001 Vitis vinifera HOM05D007498 ORTHO05D009384 2.8e-124 449.5 403 59.6
Prupe.3G211200 Prunus persica HOM05D007498 ORTHO05D009384 4.0e-123 445.7 403 58.1
TAR629G3061 Trochodendron aralioides HOM05D007498 ORTHO05D009384 1.5e-122 443.7 395 59.2
Ciclev10015493m.g Citrus clementina HOM05D007498 ORTHO05D009384 5.8e-122 441.8 410 58.0
Actinidia13735 Actinidia chinensis HOM05D007498 ORTHO05D009384 1.1e-120 437.6 362 61.3
Ca_16281_v3 Cicer arietinum L. HOM05D007498 ORTHO05D009384 2.4e-120 436.4 412 65.5
Actinidia09741 Actinidia chinensis HOM05D007498 ORTHO05D009384 3.2e-120 436.0 362 61.3
Rhsim09G0054300 Rhododendron simsii HOM05D007498 ORTHO05D009384 2.1e-119 433.3 459 54.9
Rhsim06G0166900 Rhododendron simsii HOM05D007498 ORTHO05D009384 2.7e-119 433.0 458 55.0
Sabra14G0119400 Salix brachista HOM05D007498 ORTHO05D009384 1.7e-118 430.3 420 55.5
Eucgr.A01096 Eucalyptus grandis HOM05D007498 ORTHO05D009384 3.0e-118 429.5 401 59.1
MD17G1103400 Malus domestica HOM05D007498 ORTHO05D009384 3.0e-118 429.5 404 55.0
Cc05_g03070 Coffea canephora HOM05D007498 ORTHO05D009384 1.9e-117 426.8 368 57.1
Gorai.001G216600 Gossypium raimondii HOM05D007498 ORTHO05D009384 1.9e-117 426.8 357 59.9
RcHm_v2.0_Chr2g0158311 Rosa chinensis HOM05D007498 ORTHO05D009384 7.3e-117 424.9 404 56.4
FAN05G5059 Fragaria x ananassa HOM05D007498 ORTHO05D009384 4.0e-115 419.1 357 60.2
Gohir.A07G187000 Gossypium hirsutum HOM05D007498 ORTHO05D009384 4.4e-114 415.6 409 54.5
THA.LOC104815344 Tarenaya hassleriana HOM05D007498 ORTHO05D009384 1.3e-113 414.1 402 54.7
vmacro12166 Vaccinium macrocarpon HOM05D007498 ORTHO05D009384 2.9e-113 412.9 440 53.6
FvH4_6g42420 Fragaria vesca HOM05D007498 ORTHO05D009384 1.1e-112 411.0 366 58.2
Aqoxy1G04193 Aquilegia oxysepala HOM05D007498 ORTHO05D009384 7.1e-112 408.3 365 57.8
Carub.0003s2696 Capsella rubella HOM05D007498 ORTHO05D009384 9.2e-112 407.9 405 55.1
Sed0020195 Sechium edule HOM05D007498 ORTHO05D009384 9.2e-112 407.9 395 53.7
Sopen05g026100 Solanum pennellii HOM05D007498 ORTHO05D009384 9.2e-112 407.9 370 55.4
Nn1g03383 Nelumbo nucifera HOM05D007498 ORTHO05D009384 2.1e-111 406.8 403 53.1
Solyc05g042050.4 Solanum lycopersicum HOM05D007498 ORTHO05D009384 6.0e-111 405.2 370 55.4
PSO541G2474 Papaver somniferum HOM05D007498 ORTHO05D009384 7.8e-111 404.8 371 57.4
Nitab4.5_0006063g0010 Nicotiana tabacum HOM05D007498 ORTHO05D009384 5.1e-110 402.1 365 57.0
Gorai.001G095600 Gossypium raimondii HOM05D007498 ORTHO05D009384 1.5e-109 400.6 403 55.1
Sc21g0001170 Simmondsia chinensis HOM05D007498 ORTHO05D009384 4.3e-109 399.1 383 54.0
CsaV3_6G037690 Cucumis sativus L. HOM05D007498 ORTHO05D009384 1.6e-108 397.1 401 51.6
CARHR103340 Cardamine hirsuta HOM05D007498 ORTHO05D009384 2.1e-108 396.7 408 52.9
AL3G43270 Arabidopsis lyrata HOM05D007498 ORTHO05D009384 3.6e-108 396.0 407 52.8
Aa31LG8G11370 Aethionema arabicum HOM05D007498 ORTHO05D009384 1.1e-107 394.4 407 54.3
HanXRQChr12g0373631 Helianthus annuus HOM05D007498 ORTHO05D009384 1.1e-107 394.4 370 53.2
PSO675G1300 Papaver somniferum HOM05D007498 ORTHO05D009384 1.4e-107 394.0 400 53.8
AT2G05755 Arabidopsis thaliana HOM05D007498 ORTHO05D009384 1.8e-107 393.7 407 52.6
PGR042G1731 Punica granatum HOM05D007498 ORTHO05D009384 1.8e-107 393.7 392 52.8
Lj1A780G53 Lonicera japonica HOM05D007498 ORTHO05D009384 5.2e-107 392.1 360 55.3
Nitab4.5_0000019g0370 Nicotiana tabacum HOM05D007498 ORTHO05D009384 1.2e-106 391.0 352 56.0
Lsat_1_v5_gn_7_95281 Lactuca sativa HOM05D007498 ORTHO05D009384 4.4e-106 389.0 361 53.7
Peaxi162Scf00100g01524 Petunia axillaris HOM05D007498 ORTHO05D009384 4.4e-106 389.0 358 56.1
Sp3g24210 Schrenkiella parvula HOM05D007498 ORTHO05D009384 9.9e-106 387.9 411 52.8
Lsat_1_v5_gn_5_123880 Lactuca sativa HOM05D007498 ORTHO05D009384 1.1e-104 384.4 370 53.0
MBI19_g41387_MAGBIO Magnolia biondii HOM05D007498 ORTHO05D009384 2.7e-103 379.8 369 52.6
A03p44690 Brassica napus HOM05D007498 ORTHO05D009384 6.0e-103 378.6 396 53.0
MD09G1113300 Malus domestica HOM05D007498 ORTHO05D009384 6.0e-103 378.6 330 57.6
BcaB08g34508 Brassica carinata HOM05D007498 ORTHO05D009384 7.8e-103 378.3 396 53.5
BcaC01g03153 Brassica carinata HOM05D007498 ORTHO05D009384 1.3e-102 377.5 396 53.3
C03p55520 Brassica napus HOM05D007498 ORTHO05D009384 1.3e-102 377.5 396 53.0
Gohir.D07G193500 Gossypium hirsutum HOM05D007498 ORTHO05D009384 2.5e-101 373.2 312 60.3
BraA03t13603Z Brassica rapa HOM05D007498 ORTHO05D009384 1.6e-100 370.5 409 51.6
BolC3t17828H Brassica oleracea HOM05D000228 ORTHO05D001122 8.1e-100 368.2 409 51.3
Duzib138G1101 Durio zibethinus HOM05D007498 ORTHO05D009384 3.9e-94 349.4 405 49.4
ATR0059G023 Amborella trichopoda HOM05D007498 ORTHO05D009384 1.0e-86 324.7 363 46.6
MELO3C014431.2 Cucumis melo HOM05D007498 ORTHO05D009384 2.1e-84 317.0 420 44.8
ClCG07G002420 Citrullus lanatus HOM05D007498 ORTHO05D009384 9.0e-83 311.6 404 45.0
Gohir.A07G083200 Gossypium hirsutum HOM05D007498 ORTHO05D009384 1.2e-82 311.2 276 59.4
Gohir.D07G089300 Gossypium hirsutum HOM05D007498 ORTHO05D009384 3.4e-82 309.7 277 59.6
Thhalv10002583m.g Eutrema salsugineum HOM05D007498 ORTHO05D009384 1.3e-78 297.7 415 47.2
FAN09G2551 Fragaria x ananassa HOM05D007498 ORTHO05D009384 4.3e-77 292.7 291 54.0
ECA234G3795 Erigeron canadensis HOM05D007498 ORTHO05D009384 9.6e-77 291.6 277 54.5
Aqoxy1G02942 Aquilegia oxysepala HOM05D007498 ORTHO05D009384 8.2e-68 261.9 253 54.2
SEGI_23048 Sequoiadendron giganteum HOM05D007498 ORTHO05D009384 4.1e-67 259.6 352 40.3
Potri.014G157700 Populus trichocarpa HOM05D007498 ORTHO05D009384 1.3e-65 254.6 234 58.1
CDE07G0657 Ceratophyllum demersum HOM05D000323 ORTHO05D009384 4.1e-59 233.0 369 39.3
FAN14G0249 Fragaria x ananassa HOM05D007498 ORTHO05D001133 7.4e-53 212.2 371 38.5
MD09G1113200 Malus domestica HOM05D007498 ORTHO05D009384 3.8e-49 199.9 241 46.9
DCAR_019260 Daucus carota HOM05D007498 ORTHO05D001133 6.5e-49 199.1 168 54.8
AagrBONN_evm.TU.Sc2ySwM_344.4295 Anthoceros agrestis HOM05D007498 ORTHO05D009384 4.2e-48 196.4 323 32.5
Cpa.g.sc132.15 Carica papaya HOM05D007498 ORTHO05D009384 3.0e-46 190.3 165 59.4
Mapoly0005s0243 Marchantia polymorpha HOM05D007498 ORTHO05D009384 9.4e-40 168.7 304 33.9
VMungo0540G0169 Vigna mungo HOM05D007498 ORTHO05D009384 2.3e-38 164.1 126 65.9
Haze_12773 Corylus avellana HOM05D007498 ORTHO05D009384 5.4e-35 152.9 217 46.5
Pp3c17_21590 Physcomitrium patens HOM05D007498 ORTHO05D009384 9.1e-35 152.1 293 32.4
SMO146G0054 Selaginella moellendorffii HOM05D007498 ORTHO05D009384 2.8e-28 130.6 296 31.1
Atru.chr6.3249 Acer truncatum HOM05D007498 ORTHO05D009384 3.0e-22 110.5 94 58.5
Aqoxy1G02941 Aquilegia oxysepala HOM05D007498 ORTHO05D009384 4.9e-20 103.2 94 54.3
VMungo0540G1885 Vigna mungo HOM05D007498 ORTHO05D009384 1.5e-16 91.7 262 30.9
Atru.chr6.3248 Acer truncatum HOM05D007498 ORTHO05D009384 4.3e-16 90.1 71 62.0
BcaB06g26853 Brassica carinata HOM05D007498 ORTHO05D009384 4.7e-07 60.1 151 32.5


User provided reference genes

Program Settings