Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34493 Trifolium pratense HOM05D000018 ORTHO05D020293 6.5e-16 86.3 44 100.0
Ca_18648_v3 Cicer arietinum L. HOM05D000018 ORTHO05D001172 6.1e-14 79.7 43 95.3
Ca_18649_v3 Cicer arietinum L. HOM05D000018 ORTHO05D001172 6.1e-14 79.7 43 95.3
Ca_18650_v3 Cicer arietinum L. HOM05D000018 ORTHO05D001172 3.0e-13 77.4 43 93.0
TPR.G40373 Trifolium pratense HOM05D000018 ORTHO05D001172 5.2e-13 76.6 43 90.7
Medtr4g087120 Medicago truncatula HOM05D000018 ORTHO05D001172 1.5e-12 75.1 43 90.7
Psat7g120800 Pisum sativum HOM05D000018 ORTHO05D001172 2.6e-12 74.3 43 88.4
TPR.G23506 Trifolium pratense HOM05D000018 ORTHO05D001172 9.8e-12 72.4 43 86.0
Medtr4g087130 Medicago truncatula HOM05D000018 ORTHO05D001172 1.7e-11 71.6 43 88.4
Medtr4g087110 Medicago truncatula HOM05D000018 ORTHO05D001172 2.2e-11 71.2 43 83.7
Psat7g120760 Pisum sativum HOM05D000018 ORTHO05D001172 3.7e-11 70.5 43 79.1
TPR.G23535 Trifolium pratense HOM05D000018 ORTHO05D001172 6.3e-11 69.7 41 85.4
VMungo1383G3329 Vigna mungo HOM05D000018 ORTHO05D001172 6.3e-11 69.7 42 85.7
arahy.Tifrunner.gnm1.ann1.0BPR43 Arachis hypogaea HOM05D000018 ORTHO05D001172 1.1e-10 68.9 41 82.9
arahy.Tifrunner.gnm1.ann1.K5M1L6 Arachis hypogaea HOM05D000018 ORTHO05D001172 1.4e-10 68.6 41 80.5
arahy.Tifrunner.gnm1.ann1.US1IIK Arachis hypogaea HOM05D000018 ORTHO05D001172 1.4e-10 68.6 41 80.5
Phvul.010G015900 Phaseolus vulgaris HOM05D000018 ORTHO05D001172 1.8e-10 68.2 42 81.0
arahy.Tifrunner.gnm1.ann1.B35K79 Arachis hypogaea HOM05D000018 ORTHO05D001172 3.1e-10 67.4 41 80.5
VMungo0251G1827 Vigna mungo HOM05D000018 ORTHO05D001172 3.1e-10 67.4 44 79.5
Glyma.07G209100 Glycine max HOM05D000018 ORTHO05D001172 4.1e-10 67.0 42 83.3
Phvul.003G293200 Phaseolus vulgaris HOM05D000018 ORTHO05D001172 4.1e-10 67.0 42 81.0
arahy.Tifrunner.gnm1.ann1.E38AZA Arachis hypogaea HOM05D000018 ORTHO05D001172 7.0e-10 66.2 39 82.1
Glyma.02G136000 Glycine max HOM05D000018 ORTHO05D001172 7.0e-10 66.2 42 81.0
Glyma.02G136200 Glycine max HOM05D000018 ORTHO05D001172 7.0e-10 66.2 44 79.5
Lj4g0027093 Lotus japonicus HOM05D000018 ORTHO05D001172 7.0e-10 66.2 44 77.3
Lj4g0024780 Lotus japonicus HOM05D000018 ORTHO05D001172 9.1e-10 65.9 42 81.0
Medtr4g087140 Medicago truncatula HOM05D000018 ORTHO05D001172 9.1e-10 65.9 42 83.3
Psat7g120840 Pisum sativum HOM05D000018 ORTHO05D001172 9.1e-10 65.9 41 80.5
VMungo0251G1634 Vigna mungo HOM05D000018 ORTHO05D001172 9.1e-10 65.9 44 77.3
Glyma.02G136300 Glycine max HOM05D000018 ORTHO05D001172 1.2e-09 65.5 44 77.3
Glyma.07G208900 Glycine max HOM05D000018 ORTHO05D001172 1.6e-09 65.1 42 76.2
TPR.G23540 Trifolium pratense HOM05D000018 ORTHO05D001172 2.7e-09 64.3 44 77.3
arahy.Tifrunner.gnm1.ann1.3VV3WE Arachis hypogaea HOM05D000018 ORTHO05D001172 4.5e-09 63.5 42 78.6
arahy.Tifrunner.gnm1.ann1.YI9B6B Arachis hypogaea HOM05D000018 ORTHO05D001172 4.5e-09 63.5 42 78.6
Phvul.008G134100 Phaseolus vulgaris HOM05D000018 ORTHO05D001172 4.5e-09 63.5 42 76.2
Lalb_Chr05g0218941 Lupinus albus HOM05D000018 ORTHO05D001172 7.7e-09 62.8 42 81.0
Lalb_Chr05g0218951 Lupinus albus HOM05D000018 ORTHO05D001172 1.0e-08 62.4 42 78.6
CAN.G128.163 Capsicum annuum HOM05D000018 ORTHO05D020293 1.7e-08 61.6 43 67.4
Peaxi162Scf00016g01348 Petunia axillaris HOM05D000018 ORTHO05D001172 1.7e-08 61.6 43 67.4
Lj4g0024554 Lotus japonicus HOM05D000018 ORTHO05D001172 2.2e-08 61.2 42 76.2
Actinidia00468 Actinidia chinensis HOM05D000018 ORTHO05D001172 2.9e-08 60.8 43 69.8
CAN.G322.70 Capsicum annuum HOM05D000018 ORTHO05D001172 3.8e-08 60.5 43 65.1
Glyma.02G136100 Glycine max HOM05D000018 ORTHO05D001172 3.8e-08 60.5 42 76.2
Medtr4g087100 Medicago truncatula HOM05D000018 ORTHO05D001172 3.8e-08 60.5 43 74.4
Atru.chr5.2846 Acer truncatum HOM05D000018 ORTHO05D001172 5.0e-08 60.1 43 62.8
Lj4g0013679 Lotus japonicus HOM05D000018 ORTHO05D001172 5.0e-08 60.1 42 73.8
QL11p040197 Quercus lobata HOM05D000018 ORTHO05D001172 5.0e-08 60.1 41 70.7
CsaV3_7G008910 Cucumis sativus L. HOM05D000018 ORTHO05D001172 6.5e-08 59.7 41 63.4
Dinv23597 Davidia involucrata HOM05D000018 ORTHO05D001172 6.5e-08 59.7 43 67.4
QL11p038715 Quercus lobata HOM05D000018 ORTHO05D001172 6.5e-08 59.7 41 68.3
Duzib052G0313 Durio zibethinus HOM05D000018 ORTHO05D001172 8.5e-08 59.3 43 65.1
CANSAT35G0067 Cannabis sativa HOM05D000018 ORTHO05D001172 1.1e-07 58.9 43 67.4
Dinv23598 Davidia involucrata HOM05D000018 ORTHO05D001172 1.1e-07 58.9 43 69.8
Eucgr.I01191 Eucalyptus grandis HOM05D000018 ORTHO05D001172 1.1e-07 58.9 43 65.1
QL11p038982 Quercus lobata HOM05D000018 ORTHO05D001172 1.1e-07 58.9 41 65.9
QL11p040257 Quercus lobata HOM05D000018 ORTHO05D001172 1.1e-07 58.9 41 65.9
Ciclev10028689m.g Citrus clementina HOM05D000018 ORTHO05D001172 1.5e-07 58.5 43 67.4
COL.COLO4_11729 Corchorus olitorius HOM05D000018 ORTHO05D001172 1.5e-07 58.5 43 67.4
Prupe.8G114800 Prunus persica HOM05D000018 ORTHO05D001172 1.5e-07 58.5 43 69.8
QL11p038886 Quercus lobata HOM05D000018 ORTHO05D001172 1.5e-07 58.5 41 70.7
QL11p038914 Quercus lobata HOM05D000018 ORTHO05D001172 1.5e-07 58.5 41 73.2
QL11p040219 Quercus lobata HOM05D000018 ORTHO05D001172 1.5e-07 58.5 41 73.2
Thecc.02G094400 Theobroma cacao HOM05D000018 ORTHO05D001172 1.5e-07 58.5 43 69.8
VMungo1215G0165 Vigna mungo HOM05D000018 ORTHO05D001172 1.5e-07 58.5 43 69.8
Lj9A363T45 Lonicera japonica HOM05D000018 ORTHO05D001172 1.9e-07 58.2 43 65.1
Lj9C363G7 Lonicera japonica HOM05D000018 ORTHO05D001172 1.9e-07 58.2 43 65.1
Lalb_Chr10g0095441 Lupinus albus HOM05D000018 ORTHO05D001172 1.9e-07 58.2 41 68.3
CANSAT35G2057 Cannabis sativa HOM05D000018 ORTHO05D001172 2.5e-07 57.8 43 65.1
vmacro02168 Vaccinium macrocarpon HOM05D000018 ORTHO05D001172 2.5e-07 57.8 43 65.1
Cfa005412 Carpinus fangiana HOM05D000018 ORTHO05D001172 4.2e-07 57.0 41 65.9
COL.COLO4_11731 Corchorus olitorius HOM05D000018 ORTHO05D001172 4.2e-07 57.0 43 65.1
Eucgr.I01189 Eucalyptus grandis HOM05D000018 ORTHO05D001172 4.2e-07 57.0 43 65.1
Rhsim11G0169800 Rhododendron simsii HOM05D000018 ORTHO05D001172 4.2e-07 57.0 43 65.1
arahy.Tifrunner.gnm1.ann1.EYA3YN Arachis hypogaea HOM05D000018 ORTHO05D001172 5.5e-07 56.6 41 68.3
arahy.Tifrunner.gnm1.ann1.HYLU9Z Arachis hypogaea HOM05D000018 ORTHO05D001172 5.5e-07 56.6 41 68.3
Ciclev10028758m.g Citrus clementina HOM05D000018 ORTHO05D001172 5.5e-07 56.6 43 62.8
Haze_01915 Corylus avellana HOM05D000018 ORTHO05D001172 5.5e-07 56.6 41 65.9
Eucgr.I01192 Eucalyptus grandis HOM05D000018 ORTHO05D001172 5.5e-07 56.6 41 68.3
Eucgr.I01197 Eucalyptus grandis HOM05D000018 ORTHO05D001172 5.5e-07 56.6 43 62.8
Hma1.2p1_3461F.1_g336140 Hydrangea macrophylla HOM05D000018 ORTHO05D001172 5.5e-07 56.6 43 67.4
Peaxi162Scf00684g00571 Petunia axillaris HOM05D000018 ORTHO05D001172 5.5e-07 56.6 44 65.9
Prupe.8G115100 Prunus persica HOM05D000018 ORTHO05D001172 5.5e-07 56.6 43 67.4
QL11p038974 Quercus lobata HOM05D000018 ORTHO05D001172 5.5e-07 56.6 41 73.2
QL11p040241 Quercus lobata HOM05D000018 ORTHO05D001172 5.5e-07 56.6 41 73.2
VMungo0331G1792 Vigna mungo HOM05D000018 ORTHO05D001172 5.5e-07 56.6 42 69.0
arahy.Tifrunner.gnm1.ann1.THQ7Q1 Arachis hypogaea HOM05D000018 ORTHO05D001172 7.2e-07 56.2 42 69.0
arahy.Tifrunner.gnm1.ann1.Z3QZS8 Arachis hypogaea HOM05D000018 ORTHO05D001172 7.2e-07 56.2 42 69.0
Cfa005411 Carpinus fangiana HOM05D000018 ORTHO05D001172 1.2e-06 55.5 43 65.1
Cfa005414 Carpinus fangiana HOM05D000018 ORTHO05D001172 1.2e-06 55.5 41 63.4
AUR62011417 Chenopodium quinoa HOM05D000018 ORTHO05D001172 1.2e-06 55.5 43 67.4
ClCG02G005610 Citrullus lanatus HOM05D000018 ORTHO05D001172 1.2e-06 55.5 41 58.5
Ciclev10028688m.g Citrus clementina HOM05D000018 ORTHO05D001172 1.2e-06 55.5 43 62.8
Dinv23599 Davidia involucrata HOM05D000018 ORTHO05D001172 1.2e-06 55.5 43 62.8
Migut.B00301 Erythranthe guttata HOM05D000018 ORTHO05D001172 1.2e-06 55.5 41 65.9
Lj9C363T5 Lonicera japonica HOM05D000018 ORTHO05D001172 1.2e-06 55.5 43 62.8
Manes.17G095300 Manihot esculenta HOM05D000018 ORTHO05D001172 1.2e-06 55.5 43 60.5
Solyc01g108880.4 Solanum lycopersicum HOM05D000018 ORTHO05D001172 1.2e-06 55.5 43 62.8
CAN.G322.71 Capsicum annuum HOM05D000018 ORTHO05D001172 1.6e-06 55.1 43 60.5
COL.COLO4_11730 Corchorus olitorius HOM05D000018 ORTHO05D001172 1.6e-06 55.1 43 62.8
Eucgr.I01187 Eucalyptus grandis HOM05D000018 ORTHO05D001172 1.6e-06 55.1 43 58.1
Nitab4.5_0000215g0030 Nicotiana tabacum HOM05D000018 ORTHO05D001172 1.6e-06 55.1 44 63.6
Oeu039695.1 Olea europaea HOM05D000018 ORTHO05D001172 1.6e-06 55.1 43 67.4
Peaxi162Scf00016g01335 Petunia axillaris HOM05D000018 ORTHO05D001172 1.6e-06 55.1 43 62.8
QL11p038937 Quercus lobata HOM05D000018 ORTHO05D001172 1.6e-06 55.1 41 70.7
Hund00312 Selenicereus undatus HOM05D000018 ORTHO05D001172 1.6e-06 55.1 41 65.9
vmacro02170 Vaccinium macrocarpon HOM05D000018 ORTHO05D001172 1.6e-06 55.1 43 65.1
Ah.01g019980 Amaranthus hybridus HOM05D000018 ORTHO05D001172 2.1e-06 54.7 42 64.3
MSTRG.20130 Avicennia marina HOM05D000018 ORTHO05D001172 2.1e-06 54.7 41 65.9
Cc02_g18330 Coffea canephora HOM05D000018 ORTHO05D001172 2.1e-06 54.7 43 62.8
Duzib132G0355 Durio zibethinus HOM05D000018 ORTHO05D001172 2.1e-06 54.7 43 62.8
Eucgr.I01206 Eucalyptus grandis HOM05D000018 ORTHO05D001172 2.1e-06 54.7 43 60.5
Lj4g0023440 Lotus japonicus HOM05D000018 ORTHO05D001172 2.1e-06 54.7 41 68.3
Medtr1g034060 Medicago truncatula HOM05D000018 ORTHO05D001172 2.1e-06 54.7 41 61.0
Medtr1g034120 Medicago truncatula HOM05D000018 ORTHO05D001172 2.1e-06 54.7 41 61.0
Oeu021928.1 Olea europaea HOM05D000018 ORTHO05D001172 2.1e-06 54.7 43 62.8
BcaB04g19016 Brassica carinata HOM05D000018 ORTHO05D001172 2.7e-06 54.3 41 61.0
BcaB04g19017 Brassica carinata HOM05D000018 ORTHO05D001172 2.7e-06 54.3 41 61.0
CSS0021865 Camellia sinensis var. sinensis HOM05D000018 ORTHO05D001172 2.7e-06 54.3 43 58.1
CANSAT35G1690 Cannabis sativa HOM05D000018 ORTHO05D001172 2.7e-06 54.3 43 58.1
Eucgr.I01195 Eucalyptus grandis HOM05D000018 ORTHO05D001172 2.7e-06 54.3 43 60.5
HanXRQChr12g0374551 Helianthus annuus HOM05D000018 ORTHO05D001172 2.7e-06 54.3 43 58.1
Lsat_1_v5_gn_5_117660 Lactuca sativa HOM05D000018 ORTHO05D001172 2.7e-06 54.3 44 61.4
Hund06194 Selenicereus undatus HOM05D000018 ORTHO05D001172 2.7e-06 54.3 44 68.2
Sopen01g051080 Solanum pennellii HOM05D000018 ORTHO05D001172 2.7e-06 54.3 43 62.8
PGSC0003DMG400025924 Solanum tuberosum HOM05D000018 ORTHO05D001172 2.7e-06 54.3 43 60.5
HPP92_018729 Vanilla planifolia HOM05D000018 ORTHO05D001172 2.7e-06 54.3 41 61.0
CiPaw.06G140700 Carya illinoinensis HOM05D000018 ORTHO05D001172 3.6e-06 53.9 43 62.8
QL11p038994 Quercus lobata HOM05D000018 ORTHO05D001172 3.6e-06 53.9 43 62.8
QL11p040279 Quercus lobata HOM05D000018 ORTHO05D001172 3.6e-06 53.9 43 62.8
Sed0024491 Sechium edule HOM05D000018 ORTHO05D001172 3.6e-06 53.9 41 56.1
arahy.Tifrunner.gnm1.ann1.32CFE9 Arachis hypogaea HOM05D000018 ORTHO05D001172 4.7e-06 53.5 43 62.8
arahy.Tifrunner.gnm1.ann1.5QZF0A Arachis hypogaea HOM05D000018 ORTHO05D001172 4.7e-06 53.5 43 62.8
BcaC01g03659 Brassica carinata HOM05D000018 ORTHO05D001172 4.7e-06 53.5 41 61.0
A03p40940 Brassica napus HOM05D000018 ORTHO05D001172 4.7e-06 53.5 41 61.0
A03p40950 Brassica napus HOM05D000018 ORTHO05D001172 4.7e-06 53.5 41 61.0
C03p49980 Brassica napus HOM05D000018 ORTHO05D001172 4.7e-06 53.5 41 61.0
C03p49990 Brassica napus HOM05D000018 ORTHO05D001172 4.7e-06 53.5 41 61.0
C03p50000 Brassica napus HOM05D000018 ORTHO05D001172 4.7e-06 53.5 41 61.0
BolC3t17289H Brassica oleracea HOM05D000018 ORTHO05D001172 4.7e-06 53.5 41 61.0
BraA03t13252Z Brassica rapa HOM05D000395 ORTHO05D000088 4.7e-06 53.5 41 61.0
BraA03t13253Z Brassica rapa HOM05D000018 ORTHO05D001172 4.7e-06 53.5 41 61.0
Cfa005413 Carpinus fangiana HOM05D000018 ORTHO05D001172 4.7e-06 53.5 41 63.4
Glyma.07G209002 Glycine max HOM05D000018 ORTHO05D020293 4.7e-06 53.5 38 78.9
Lj9A363T48 Lonicera japonica HOM05D000018 ORTHO05D001172 4.7e-06 53.5 43 60.5
Psat6g132000 Pisum sativum HOM05D000018 ORTHO05D001172 4.7e-06 53.5 41 58.5
Rhsim11G0169700 Rhododendron simsii HOM05D000018 ORTHO05D001172 4.7e-06 53.5 43 62.8
Sabra09G0081900 Salix brachista HOM05D000018 ORTHO05D001172 4.7e-06 53.5 43 65.1
SalBow6G6524 Salvia bowleyana HOM05D000018 ORTHO05D001172 4.7e-06 53.5 41 65.9
Aa31LG8G5830 Aethionema arabicum HOM05D000018 ORTHO05D001172 6.1e-06 53.1 41 58.5
Ca_18651_v3 Cicer arietinum L. HOM05D000018 ORTHO05D001172 6.1e-06 53.1 43 62.8
MELO3C028576.2 Cucumis melo HOM05D000018 ORTHO05D001172 6.1e-06 53.1 43 58.1
Eucgr.I01194 Eucalyptus grandis HOM05D000018 ORTHO05D001172 6.1e-06 53.1 43 58.1
HanXRQChr12g0375021 Helianthus annuus HOM05D000018 ORTHO05D001172 6.1e-06 53.1 43 55.8
Hma1.2p1_1543F.1_g289810 Hydrangea macrophylla HOM05D000018 ORTHO05D001172 6.1e-06 53.1 43 62.8
Lsat_1_v5_gn_5_117640 Lactuca sativa HOM05D000018 ORTHO05D001172 6.1e-06 53.1 44 63.6
Phvul.003G011900 Phaseolus vulgaris HOM05D000018 ORTHO05D001172 6.1e-06 53.1 41 63.4
Psat6g096160 Pisum sativum HOM05D000018 ORTHO05D001172 6.1e-06 53.1 41 58.5
Potri.004G146000 Populus trichocarpa HOM05D000018 ORTHO05D001172 6.1e-06 53.1 43 60.5
Rhsim11G0169600 Rhododendron simsii HOM05D000018 ORTHO05D001172 6.1e-06 53.1 43 62.8
Sabra09G0082100 Salix brachista HOM05D000018 ORTHO05D001172 6.1e-06 53.1 43 60.5
arahy.Tifrunner.gnm1.ann1.E3T7T1 Arachis hypogaea HOM05D000018 ORTHO05D001172 8.0e-06 52.8 43 65.1
arahy.Tifrunner.gnm1.ann1.IEA635 Arachis hypogaea HOM05D000018 ORTHO05D001172 8.0e-06 52.8 43 65.1
CiPaw.05G056500 Carya illinoinensis HOM05D000018 ORTHO05D001172 8.0e-06 52.8 41 63.4
Ciclev10028699m.g Citrus clementina HOM05D000018 ORTHO05D001172 8.0e-06 52.8 43 60.5
Eucgr.I01200 Eucalyptus grandis HOM05D000018 ORTHO05D001172 8.0e-06 52.8 43 60.5
Lj2g0022677 Lotus japonicus HOM05D000018 ORTHO05D001172 8.0e-06 52.8 41 63.4
Nn5g29382 Nelumbo nucifera HOM05D000018 ORTHO05D001172 8.0e-06 52.8 43 60.5
Rhsim11G0169400 Rhododendron simsii HOM05D000018 ORTHO05D001172 8.0e-06 52.8 43 62.8
PGSC0003DMG402025923 Solanum tuberosum HOM05D000018 ORTHO05D001172 8.0e-06 52.8 43 60.5
SGA_v2.0_scaffold146G36113 Striga asiatica HOM05D000018 ORTHO05D001172 8.0e-06 52.8 43 62.8
TWI79G1375 Tripterygium wilfordii HOM05D000018 ORTHO05D001172 8.0e-06 52.8 43 65.1
TAR381G0086 Trochodendron aralioides HOM05D000018 ORTHO05D001172 8.0e-06 52.8 43 65.1


User provided reference genes

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