Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34470 Trifolium pratense HOM05D000131 ORTHO05D000086 1.1e-37 159.5 78 100.0
TPR.G34477 Trifolium pratense HOM05D000131 ORTHO05D000086 1.6e-33 145.6 75 94.7
TPR.G28829 Trifolium pratense HOM05D000131 ORTHO05D000086 4.1e-29 131.0 76 84.2
Medtr5g019160 Medicago truncatula HOM05D000131 ORTHO05D000086 5.4e-29 130.6 75 81.3
TPR.G13031 Trifolium pratense HOM05D000131 ORTHO05D000086 7.0e-29 130.2 75 81.3
Medtr5g019060 Medicago truncatula HOM05D000131 ORTHO05D000086 9.1e-29 129.8 75 82.7
Psat5g140520 Pisum sativum HOM05D000131 ORTHO05D000086 9.1e-29 129.8 75 81.3
Ca_01371_v3 Cicer arietinum L. HOM05D000131 ORTHO05D000086 2.0e-28 128.6 75 82.7
Medtr5g035840 Medicago truncatula HOM05D000131 ORTHO05D000086 2.0e-28 128.6 75 82.7
Medtr5g019090 Medicago truncatula HOM05D000131 ORTHO05D000086 2.2e-27 125.2 75 78.7
Psat6g021040 Pisum sativum HOM05D000131 ORTHO05D000086 2.9e-27 124.8 75 77.3
Psat6g021080 Pisum sativum HOM05D000131 ORTHO05D000086 2.9e-27 124.8 75 77.3
TPR.G34484 Trifolium pratense HOM05D000131 ORTHO05D000086 2.9e-27 124.8 75 80.0
Phvul.002G025800 Phaseolus vulgaris HOM05D000131 ORTHO05D000086 4.2e-26 120.9 74 74.3
Lalb_Chr00c33g0408401 Lupinus albus HOM05D000131 ORTHO05D000086 9.4e-26 119.8 75 70.7
Lalb_Chr00c33g0408411 Lupinus albus HOM05D000131 ORTHO05D000086 9.4e-26 119.8 75 70.7
Lalb_Chr03g0038501 Lupinus albus HOM05D000131 ORTHO05D000086 9.4e-26 119.8 75 70.7
Lalb_Chr03g0038521 Lupinus albus HOM05D000131 ORTHO05D000086 9.4e-26 119.8 75 70.7
Lalb_Chr03g0038541 Lupinus albus HOM05D000131 ORTHO05D000086 9.4e-26 119.8 75 70.7
Lalb_Chr03g0038551 Lupinus albus HOM05D000131 ORTHO05D000086 9.4e-26 119.8 75 70.7
Lalb_Chr03g0038561 Lupinus albus HOM05D000131 ORTHO05D000086 9.4e-26 119.8 75 70.7
Lj3g0015526 Lotus japonicus HOM05D000131 ORTHO05D000086 2.7e-25 118.2 75 77.3
Medtr8g078390 Medicago truncatula HOM05D000131 ORTHO05D000086 2.7e-25 118.2 75 74.7
Glyma.01G178900 Glycine max HOM05D000131 ORTHO05D000086 6.1e-25 117.1 75 74.7
TPR.G23911 Trifolium pratense HOM05D000131 ORTHO05D000086 6.1e-25 117.1 65 86.2
Glyma.11G063300 Glycine max HOM05D000131 ORTHO05D000086 1.0e-24 116.3 75 73.3
Medtr8g078350 Medicago truncatula HOM05D000131 ORTHO05D000086 1.8e-24 115.5 75 72.0
Lalb_Chr23g0276841 Lupinus albus HOM05D000131 ORTHO05D000086 4.0e-24 114.4 75 70.7
Medtr8g078310 Medicago truncatula HOM05D000131 ORTHO05D000086 4.0e-24 114.4 75 72.0
Ca_14327_v3 Cicer arietinum L. HOM05D000131 ORTHO05D000086 6.8e-24 113.6 75 72.0
Medtr3g030900 Medicago truncatula HOM05D000131 ORTHO05D000086 8.8e-24 113.2 75 72.0
Medtr5g019170 Medicago truncatula HOM05D000131 ORTHO05D000086 8.8e-24 113.2 64 81.2
Medtr8g078280 Medicago truncatula HOM05D000131 ORTHO05D000086 3.4e-23 111.3 75 70.7
Ca_03665_v3 Cicer arietinum L. HOM05D000131 ORTHO05D000086 4.4e-23 110.9 75 72.0
Ca_22248_v3 Cicer arietinum L. HOM05D000131 ORTHO05D000086 4.4e-23 110.9 75 70.7
TPR.G25426 Trifolium pratense HOM05D000131 ORTHO05D000086 4.4e-23 110.9 75 70.7
Ca_27201_v3 Cicer arietinum L. HOM05D000131 ORTHO05D000086 5.7e-23 110.5 75 72.0
Lj2g0014515 Lotus japonicus HOM05D000131 ORTHO05D000086 7.5e-23 110.2 75 69.3
Ca_20648_v3 Cicer arietinum L. HOM05D000131 ORTHO05D000086 2.2e-22 108.6 75 70.7
Lj2g0024816 Lotus japonicus HOM05D000131 ORTHO05D000086 4.9e-22 107.5 77 67.5
VMungo1215G1601 Vigna mungo HOM05D000131 ORTHO05D000086 8.3e-22 106.7 75 64.0
Lalb_Chr23g0276881 Lupinus albus HOM05D000131 ORTHO05D000086 1.1e-21 106.3 75 66.7
arahy.Tifrunner.gnm1.ann1.JFM04T Arachis hypogaea HOM05D000131 ORTHO05D000086 1.8e-21 105.5 76 65.8
arahy.Tifrunner.gnm1.ann1.NK8034 Arachis hypogaea HOM05D000131 ORTHO05D000086 1.8e-21 105.5 76 65.8
Medtr4g064420 Medicago truncatula HOM05D000131 ORTHO05D000086 2.4e-21 105.1 72 70.8
arahy.Tifrunner.gnm1.ann1.SITY2F Arachis hypogaea HOM05D000131 ORTHO05D000086 1.3e-19 99.4 64 73.4
arahy.Tifrunner.gnm1.ann1.T2RQFV Arachis hypogaea HOM05D000131 ORTHO05D000086 1.3e-19 99.4 64 73.4
arahy.Tifrunner.gnm1.ann1.YP07ID Arachis hypogaea HOM05D000131 ORTHO05D000086 1.3e-19 99.4 64 73.4
arahy.Tifrunner.gnm1.ann1.G7502V Arachis hypogaea HOM05D000131 ORTHO05D000086 1.7e-19 99.0 64 71.9
arahy.Tifrunner.gnm1.ann1.S30E02 Arachis hypogaea HOM05D000131 ORTHO05D000086 1.7e-19 99.0 64 71.9
Phvul.004G101600 Phaseolus vulgaris HOM05D000131 ORTHO05D000086 1.1e-18 96.3 67 65.7
Lalb_Chr08g0231601 Lupinus albus HOM05D000131 ORTHO05D000086 2.5e-18 95.1 75 61.3
Medtr1g069950 Medicago truncatula HOM05D000131 ORTHO05D000086 9.5e-18 93.2 67 65.7
Phvul.004G098100 Phaseolus vulgaris HOM05D000131 ORTHO05D000086 2.1e-17 92.0 73 60.3
Prupe.1G565500 Prunus persica HOM05D000131 ORTHO05D000086 5.2e-16 87.4 75 58.7
Prupe.1G565700 Prunus persica HOM05D000131 ORTHO05D000086 5.2e-16 87.4 75 58.7
Prupe.1G565800 Prunus persica HOM05D000131 ORTHO05D000086 5.2e-16 87.4 75 58.7
Manes.05G188900 Manihot esculenta HOM05D000131 ORTHO05D000086 2.0e-15 85.5 75 57.3
Glyma.16G142400 Glycine max HOM05D000131 ORTHO05D000086 3.4e-15 84.7 59 69.5
Manes.05G188600 Manihot esculenta HOM05D000131 ORTHO05D000086 3.4e-15 84.7 75 56.0
Phvul.004G101900 Phaseolus vulgaris HOM05D000131 ORTHO05D000086 3.4e-15 84.7 73 56.2
THA.LOC104819344 Tarenaya hassleriana HOM05D000131 ORTHO05D000086 3.4e-15 84.7 75 49.3
Glyma.13G152712 Glycine max HOM05D000131 ORTHO05D000086 4.4e-15 84.3 75 57.3
Hma1.2p1_0807F.1_g221440 Hydrangea macrophylla HOM05D000131 ORTHO05D000086 4.4e-15 84.3 75 58.7
Lj2g0025894 Lotus japonicus HOM05D000131 ORTHO05D000086 4.4e-15 84.3 57 73.7
MD06G1241300 Malus domestica HOM05D000131 ORTHO05D000086 4.4e-15 84.3 68 61.8
THA.LOC104800140 Tarenaya hassleriana HOM05D000131 ORTHO05D000086 5.7e-15 84.0 77 53.2
Psat2g162520 Pisum sativum HOM05D000131 ORTHO05D000086 7.5e-15 83.6 46 78.3
Haze_08865 Corylus avellana HOM05D000131 ORTHO05D000086 9.8e-15 83.2 75 56.0
VMungo1127G1674 Vigna mungo HOM05D000131 ORTHO05D000086 9.8e-15 83.2 56 64.3
Aa31LG3G17720 Aethionema arabicum HOM05D000131 ORTHO05D000086 1.3e-14 82.8 75 49.3
Manes.05G188500 Manihot esculenta HOM05D000131 ORTHO05D000086 1.3e-14 82.8 75 56.0
Manes.18G057300 Manihot esculenta HOM05D000131 ORTHO05D000086 1.3e-14 82.8 75 54.7
Haze_08851 Corylus avellana HOM05D000131 ORTHO05D000086 2.2e-14 82.0 75 56.0
Haze_08849 Corylus avellana HOM05D000131 ORTHO05D000086 2.9e-14 81.6 75 53.3
TWI31G1058 Tripterygium wilfordii HOM05D000131 ORTHO05D000086 2.9e-14 81.6 75 58.7
QL03p056059 Quercus lobata HOM05D000131 ORTHO05D000086 4.9e-14 80.9 76 55.3
Dinv09762 Davidia involucrata HOM05D000131 ORTHO05D000086 6.3e-14 80.5 75 56.0
Potri.003G218200 Populus trichocarpa HOM05D000131 ORTHO05D000086 6.3e-14 80.5 75 53.3
CARHR204130 Cardamine hirsuta HOM05D000131 ORTHO05D000086 8.3e-14 80.1 75 45.3
GSVIVG01024239001 Vitis vinifera HOM05D000131 ORTHO05D000086 8.3e-14 80.1 75 52.0
Cpa.g.sc42.185 Carica papaya HOM05D000131 ORTHO05D000086 1.4e-13 79.3 75 53.3
FvH4_5g27090 Fragaria vesca HOM05D000131 ORTHO05D000086 1.8e-13 79.0 75 56.0
FAN08G1834 Fragaria x ananassa HOM05D000131 ORTHO05D000086 1.8e-13 79.0 75 56.0
FAN18G0893 Fragaria x ananassa HOM05D000131 ORTHO05D000086 1.8e-13 79.0 75 56.0
Oeu052806.1 Olea europaea HOM05D000131 ORTHO05D000086 1.8e-13 79.0 76 55.3
PSO782G2765 Papaver somniferum HOM05D000131 ORTHO05D000086 2.4e-13 78.6 75 53.3
Thecc.03G190600 Theobroma cacao HOM05D000131 ORTHO05D000086 2.4e-13 78.6 75 52.0
TAR472G0002 Trochodendron aralioides HOM05D000131 ORTHO05D000086 2.4e-13 78.6 75 52.0
Manes.05G174001 Manihot esculenta HOM05D000131 ORTHO05D000086 3.2e-13 78.2 75 52.0
Eucgr.K02336 Eucalyptus grandis HOM05D000131 ORTHO05D000086 4.1e-13 77.8 73 56.2
Sabra01G0005700 Salix brachista HOM05D000131 ORTHO05D000086 5.4e-13 77.4 76 51.3
Gohir.A06G163100 Gossypium hirsutum HOM05D000131 ORTHO05D000086 9.2e-13 76.6 77 51.9
Gohir.D06G168800 Gossypium hirsutum HOM05D000131 ORTHO05D000086 9.2e-13 76.6 77 51.9
Duzib068G0488 Durio zibethinus HOM05D000131 ORTHO05D000086 1.2e-12 76.3 75 52.0
Gohir.D06G168700 Gossypium hirsutum HOM05D000131 ORTHO05D000086 1.2e-12 76.3 77 51.9
Lj5A168T100 Lonicera japonica HOM05D000131 ORTHO05D000086 1.2e-12 76.3 76 52.6
Sed0015814 Sechium edule HOM05D000131 ORTHO05D000086 1.2e-12 76.3 70 57.1
Cc04_g02160 Coffea canephora HOM05D000131 ORTHO05D000086 1.6e-12 75.9 77 50.6
CsaV3_1G005190 Cucumis sativus L. HOM05D000131 ORTHO05D000086 1.6e-12 75.9 76 53.9
Duzib084G0903 Durio zibethinus HOM05D000131 ORTHO05D000086 1.6e-12 75.9 75 49.3
Duzib133G1551 Durio zibethinus HOM05D000131 ORTHO05D000086 1.6e-12 75.9 75 50.7
Gorai.010G196900 Gossypium raimondii HOM05D000131 ORTHO05D000086 1.6e-12 75.9 77 51.9
QL12p033505 Quercus lobata HOM05D000131 ORTHO05D000086 1.6e-12 75.9 74 52.7
QL12p034198 Quercus lobata HOM05D000131 ORTHO05D000086 1.6e-12 75.9 74 52.7
ClCG04G012510 Citrullus lanatus HOM05D000131 ORTHO05D000086 2.0e-12 75.5 70 55.7
COL.COLO4_07419 Corchorus olitorius HOM05D000131 ORTHO05D000086 2.0e-12 75.5 75 52.0
Gohir.A08G200600 Gossypium hirsutum HOM05D000131 ORTHO05D000086 2.0e-12 75.5 77 50.6
MD06G1000300 Malus domestica HOM05D000131 ORTHO05D000086 2.0e-12 75.5 78 53.8
Rhsim03G0189700 Rhododendron simsii HOM05D000131 ORTHO05D000086 2.0e-12 75.5 77 49.4
AL6G19670 Arabidopsis lyrata HOM05D000131 ORTHO05D000086 2.7e-12 75.1 75 44.0
Carub.0006s0783 Capsella rubella HOM05D000131 ORTHO05D000086 2.7e-12 75.1 75 44.0
Cpa.g.sc51.17 Carica papaya HOM05D000131 ORTHO05D000086 2.7e-12 75.1 75 50.7
MELO3C001958.2 Cucumis melo HOM05D000131 ORTHO05D000086 2.7e-12 75.1 76 53.9
Gohir.D06G168600 Gossypium hirsutum HOM05D000131 ORTHO05D000086 2.7e-12 75.1 77 50.6
Lj9A410T69 Lonicera japonica HOM05D000131 ORTHO05D000086 2.7e-12 75.1 75 50.7
Actinidia34143 Actinidia chinensis HOM05D000131 ORTHO05D000086 3.5e-12 74.7 76 50.0
Gohir.A06G163166 Gossypium hirsutum HOM05D000131 ORTHO05D000086 3.5e-12 74.7 77 50.6
Gorai.004G231500 Gossypium raimondii HOM05D000131 ORTHO05D000086 3.5e-12 74.7 77 50.6
Potri.001G007400 Populus trichocarpa HOM05D000131 ORTHO05D000086 3.5e-12 74.7 77 51.9
BolC9t59564H Brassica oleracea HOM05D000131 ORTHO05D000086 4.6e-12 74.3 77 46.8
Thecc.03G190500 Theobroma cacao HOM05D000131 ORTHO05D000086 5.9e-12 73.9 75 50.7
BcaB05g21560 Brassica carinata HOM05D000131 ORTHO05D000086 7.8e-12 73.6 75 44.0
BcaB08g37220 Brassica carinata HOM05D000131 ORTHO05D000086 7.8e-12 73.6 75 44.0
A10p27940 Brassica napus HOM05D000131 ORTHO05D000086 7.8e-12 73.6 77 46.8
C09p68040 Brassica napus HOM05D000131 ORTHO05D000086 7.8e-12 73.6 77 46.8
BraA10t44843Z Brassica rapa HOM05D000131 ORTHO05D000086 7.8e-12 73.6 77 46.8
CANSAT54G1445 Cannabis sativa HOM05D000131 ORTHO05D000086 1.7e-11 72.4 75 49.3
CiPaw.11G136000 Carya illinoinensis HOM05D000131 ORTHO05D000086 1.7e-11 72.4 77 51.9
Gohir.D08G217800 Gossypium hirsutum HOM05D000131 ORTHO05D000086 2.3e-11 72.0 77 49.4
Sp6g34030 Schrenkiella parvula HOM05D000131 ORTHO05D000086 2.3e-11 72.0 75 42.7
Gorai.010G197200 Gossypium raimondii HOM05D000131 ORTHO05D000086 2.9e-11 71.6 77 49.4
Medtr6g077900 Medicago truncatula HOM05D000131 ORTHO05D000086 3.9e-11 71.2 51 62.7
Gohir.D12G254100 Gossypium hirsutum HOM05D000131 ORTHO05D000086 5.0e-11 70.9 77 49.4
vmacro06642 Vaccinium macrocarpon HOM05D000131 ORTHO05D000086 5.0e-11 70.9 77 46.8
Lj4A250T98 Lonicera japonica HOM05D000131 ORTHO05D000086 6.6e-11 70.5 76 51.3
DCAR_023238 Daucus carota HOM05D000131 ORTHO05D000086 8.6e-11 70.1 77 50.6
DCAR_023240 Daucus carota HOM05D000131 ORTHO05D000086 8.6e-11 70.1 77 50.6
Gorai.008G271800 Gossypium raimondii HOM05D000131 ORTHO05D000086 1.1e-10 69.7 77 49.4
Gorai.010G196800 Gossypium raimondii HOM05D000131 ORTHO05D000086 1.5e-10 69.3 66 54.5
Peaxi162Scf00177g00023 Petunia axillaris HOM05D000131 ORTHO05D000086 1.5e-10 69.3 70 47.1
Gohir.A12G255033 Gossypium hirsutum HOM05D000131 ORTHO05D000086 1.9e-10 68.9 77 49.4
Gohir.D12G254200 Gossypium hirsutum HOM05D000131 ORTHO05D000086 2.5e-10 68.6 77 48.1
Gorai.008G271900 Gossypium raimondii HOM05D000131 ORTHO05D000086 3.3e-10 68.2 77 48.1
Nn3g18534 Nelumbo nucifera HOM05D000131 ORTHO05D000086 3.3e-10 68.2 70 45.7
Cfa012172 Carpinus fangiana HOM05D000131 ORTHO05D000086 4.3e-10 67.8 75 46.7
EL10Ac7g16240 Beta vulgaris HOM05D000131 ORTHO05D000086 5.6e-10 67.4 66 56.1
Atru.chr9.1592 Acer truncatum HOM05D000131 ORTHO05D000086 7.3e-10 67.0 75 49.3
COL.COLO4_24802 Corchorus olitorius HOM05D000131 ORTHO05D000086 7.3e-10 67.0 75 46.7
Gohir.A12G255000 Gossypium hirsutum HOM05D000131 ORTHO05D000086 9.5e-10 66.6 77 48.1
PGR044G1788 Punica granatum HOM05D000131 ORTHO05D000086 9.5e-10 66.6 67 53.7
Sc06g0008550 Simmondsia chinensis HOM05D000131 ORTHO05D000086 1.2e-09 66.2 65 53.8
Atru.chr9.1594 Acer truncatum HOM05D000131 ORTHO05D000086 1.6e-09 65.9 75 48.0
Nn4g25056 Nelumbo nucifera HOM05D000131 ORTHO05D000086 1.6e-09 65.9 70 45.7
Nitab4.5_0006642g0030 Nicotiana tabacum HOM05D000131 ORTHO05D000086 2.1e-09 65.5 67 47.8
Solyc12g044750.3 Solanum lycopersicum HOM05D000131 ORTHO05D000086 2.8e-09 65.1 73 49.3
Sopen12g022880 Solanum pennellii HOM05D000131 ORTHO05D000086 2.8e-09 65.1 73 49.3
PGSC0003DMG400029212 Solanum tuberosum HOM05D000131 ORTHO05D000086 2.8e-09 65.1 74 47.3
MSTRG.10999 Avicennia marina HOM05D000131 ORTHO05D000086 1.4e-08 62.8 76 46.1
AUR62001597 Chenopodium quinoa HOM05D000131 ORTHO05D000086 1.4e-08 62.8 62 53.2
AUR62020183 Chenopodium quinoa HOM05D000131 ORTHO05D000086 1.4e-08 62.8 62 53.2
Migut.I01004 Erythranthe guttata HOM05D000131 ORTHO05D000086 3.1e-08 61.6 76 43.4
SGA_v2.0_scaffold45G16994 Striga asiatica HOM05D000131 ORTHO05D000086 3.1e-08 61.6 76 43.4
unitig_0.g2773 Utricularia gibba HOM05D000131 ORTHO05D000086 4.0e-08 61.2 76 44.7
SalBow6G3739 Salvia bowleyana HOM05D000131 ORTHO05D000086 5.2e-08 60.8 76 43.4
Ah.08g222580 Amaranthus hybridus HOM05D000131 ORTHO05D000086 6.8e-08 60.5 63 50.8
SGA_v2.0_scaffold71G23743 Striga asiatica HOM05D000131 ORTHO05D000086 6.8e-08 60.5 76 43.4
Aqoxy3G04340 Aquilegia oxysepala HOM05D000131 ORTHO05D000086 8.9e-08 60.1 75 45.3
CAN.G1818.7 Capsicum annuum HOM05D000131 ORTHO05D000086 8.9e-08 60.1 79 40.5
ATR0124G025 Amborella trichopoda HOM05D000131 ORTHO05D000086 1.5e-07 59.3 76 42.1
Aqoxy7G02808 Aquilegia oxysepala HOM05D000131 ORTHO05D000086 3.4e-07 58.2 75 42.7
Aqoxy6G01503 Aquilegia oxysepala HOM05D000131 ORTHO05D000086 5.8e-07 57.4 75 41.3
Manes.05G188400 Manihot esculenta HOM05D000131 ORTHO05D000086 5.8e-07 57.4 61 45.9
SEGI_23805 Sequoiadendron giganteum HOM05D000131 ORTHO05D000086 7.5e-07 57.0 74 39.2
SEGI_24501 Sequoiadendron giganteum HOM05D000131 ORTHO05D000086 7.5e-07 57.0 74 39.2
Nitab4.5_0003218g0040 Nicotiana tabacum HOM05D000131 ORTHO05D000086 9.8e-07 56.6 53 54.7
Rhsim12G0137500 Rhododendron simsii HOM05D000131 ORTHO05D000086 1.3e-06 56.2 76 42.1
Psat2g162480 Pisum sativum HOM05D000131 ORTHO05D000086 2.2e-06 55.5 29 79.3
PGR044G2286 Punica granatum HOM05D000131 ORTHO05D000086 3.7e-06 54.7 67 44.8
CARHR029740 Cardamine hirsuta HOM05D000131 ORTHO05D000086 6.4e-06 53.9 75 40.0


User provided reference genes

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