Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 2.6e-286 988.0 503 100.0
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 1.6e-198 696.4 503 73.2
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 4.9e-184 648.3 505 68.9
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 9.3e-175 617.5 503 65.8
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 1.6e-174 616.7 503 67.0
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 1.9e-172 609.8 503 66.6
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 5.6e-172 608.2 443 71.8
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 1.2e-161 573.9 503 63.4
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 3.8e-160 568.9 505 61.6
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 4.2e-159 565.5 442 67.4
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 7.2e-159 564.7 504 61.1
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 3.6e-158 562.4 505 60.8
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 7.9e-158 561.2 504 60.3
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 7.9e-158 561.2 504 60.7
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 1.8e-157 560.1 503 59.8
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 6.7e-157 558.1 508 60.4
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 1.3e-155 553.9 479 63.9
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 1.6e-155 553.5 503 59.0
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 1.8e-154 550.1 438 66.0
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 2.4e-154 549.7 505 59.4
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 5.3e-154 548.5 503 59.0
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 9.1e-154 547.7 504 60.5
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 2.6e-153 546.2 507 59.6
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 4.5e-153 545.4 504 60.1
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 1.7e-152 543.5 503 59.0
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 5.0e-152 542.0 501 59.7
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 8.5e-152 541.2 445 64.5
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 8.5e-152 541.2 503 58.6
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 1.2e-150 537.3 425 65.4
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 1.2e-150 537.3 501 58.3
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 1.6e-150 537.0 505 57.4
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 1.0e-149 534.3 503 58.4
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 1.0e-149 534.3 506 58.3
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 1.4e-149 533.9 503 58.6
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 2.0e-148 530.0 441 64.4
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 3.3e-148 529.3 464 60.8
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 3.7e-147 525.8 450 62.9
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 3.7e-147 525.8 441 63.3
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 4.8e-147 525.4 504 57.5
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.1e-146 524.2 441 63.0
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 1.1e-146 524.2 453 62.3
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 1.4e-146 523.9 502 56.4
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 3.4e-145 519.2 504 56.7
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 1.0e-144 517.7 505 57.4
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 2.9e-144 516.2 433 63.7
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 6.5e-144 515.0 505 56.8
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 2.5e-143 513.1 442 61.1
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 2.5e-143 513.1 504 55.8
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 3.2e-143 512.7 506 56.7
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 9.4e-143 511.1 442 63.3
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 2.7e-142 509.6 412 64.3
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 2.7e-142 509.6 438 61.9
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 3.6e-142 509.2 489 57.5
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 1.8e-141 506.9 506 54.5
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 5.2e-141 505.4 386 70.5
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 5.7e-140 501.9 509 57.0
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 1.7e-139 500.4 451 60.3
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 6.3e-139 498.4 498 55.0
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 1.4e-138 497.3 460 58.9
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 5.3e-138 495.4 417 62.1
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 7.0e-138 495.0 348 71.8
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 2.0e-137 493.4 502 54.8
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 7.7e-137 491.5 459 58.6
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 1.3e-136 490.7 503 54.9
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 2.9e-136 489.6 502 54.2
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 4.2e-135 485.7 503 54.3
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 4.2e-135 485.7 503 53.5
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 5.5e-135 485.3 513 54.0
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 2.7e-134 483.0 404 63.4
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 3.6e-134 482.6 502 54.4
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 2.3e-133 479.9 437 57.9
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 4.0e-133 479.2 509 53.8
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 4.0e-133 479.2 515 53.8
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 5.2e-133 478.8 434 60.4
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 6.7e-133 478.4 391 64.7
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 1.5e-132 477.2 468 54.7
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 7.5e-132 474.9 508 52.8
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 1.7e-131 473.8 511 52.4
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.8e-131 473.0 448 57.8
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 1.1e-130 471.1 447 57.5
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 2.4e-130 469.9 438 56.8
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 2.4e-130 469.9 508 52.4
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 1.2e-129 467.6 510 52.2
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.2e-129 467.6 453 57.6
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.6e-129 467.2 459 56.0
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 2.0e-129 466.8 503 51.7
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.7e-129 466.5 451 57.4
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 2.7e-129 466.5 444 57.7
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 3.5e-129 466.1 441 57.6
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 7.7e-129 464.9 412 60.2
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 5.0e-128 462.2 514 52.5
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 5.0e-128 462.2 348 68.1
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 6.5e-128 461.8 484 55.6
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 8.5e-128 461.5 511 53.0
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 1.9e-127 460.3 412 59.7
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 4.2e-127 459.1 498 51.8
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 5.5e-127 458.8 509 51.7
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 3.6e-126 456.1 449 56.1
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 8.0e-126 454.9 438 56.2
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 1.8e-125 453.8 439 56.5
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 6.8e-125 451.8 529 50.7
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 8.8e-125 451.4 387 61.2
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.7e-123 447.2 501 51.3
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 2.8e-123 446.4 498 50.8
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 6.3e-123 445.3 514 50.6
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 7.0e-122 441.8 441 54.4
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 2.7e-121 439.9 502 52.6
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 4.5e-121 439.1 396 60.6
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 5.5e-119 432.2 509 49.7
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 3.6e-118 429.5 425 55.8
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 2.3e-117 426.8 411 56.0
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 1.3e-115 421.0 529 49.0
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 1.8e-114 417.2 415 55.2
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 4.1e-114 416.0 425 54.4
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 2.7e-113 413.3 545 47.0
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 5.0e-112 409.1 434 53.2
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 3.3e-111 406.4 318 67.0
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 3.3e-111 406.4 434 53.0
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 5.6e-111 405.6 438 53.2
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.6e-110 404.1 414 52.2
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 3.6e-110 402.9 417 50.6
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 1.0e-109 401.4 305 67.5
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 3.4e-108 396.4 391 56.5
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 4.9e-107 392.5 412 50.2
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 5.4e-106 389.0 440 50.9
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 7.0e-106 388.7 418 49.3
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 2.0e-105 387.1 337 59.6
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 1.5e-103 380.9 335 62.4
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 4.3e-103 379.4 354 57.3
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 5.6e-103 379.0 387 53.0
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 6.2e-102 375.6 296 61.1
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 8.0e-102 375.2 496 46.2
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 1.6e-97 360.9 421 47.7
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 1.3e-96 357.8 366 53.6
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 8.1e-94 348.6 465 46.2
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 1.5e-92 344.4 460 45.9
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 2.0e-92 344.0 461 45.6
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 7.5e-92 342.0 362 52.8
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 1.9e-90 337.4 450 46.2
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 1.9e-90 337.4 490 42.4
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 1.3e-88 331.3 352 49.7
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 2.1e-86 323.9 384 49.0
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 2.8e-86 323.6 384 49.0
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 4.0e-85 319.7 468 41.7
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 3.8e-83 313.2 486 42.4
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 4.9e-83 312.8 365 49.3
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 5.4e-82 309.3 373 48.3
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 1.4e-77 294.7 249 63.5
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 4.9e-75 286.2 290 54.5
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 2.7e-73 280.4 343 47.8
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 7.1e-58 229.2 505 35.4
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 6.0e-57 226.1 480 34.0
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 1.8e-56 224.6 504 34.9
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 3.4e-52 210.3 200 56.0
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 3.5e-49 200.3 153 65.4
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 6.7e-48 196.1 127 73.2
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 8.8e-40 169.1 139 65.5
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 9.1e-37 159.1 166 53.0
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 4.7e-33 146.7 94 72.3
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 1.2e-28 132.1 119 58.0
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 5.9e-28 129.8 186 41.4
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 1.9e-26 124.8 98 60.2
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 2.7e-25 120.9 84 71.4
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 6.1e-25 119.8 133 51.1
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 1.8e-24 118.2 94 60.6
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 1.5e-23 115.2 101 57.4
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 2.6e-23 114.4 94 60.6
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 1.1e-21 109.0 218 35.3
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 1.2e-20 105.5 324 29.6
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 1.6e-20 105.1 67 80.6
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 1.6e-17 95.1 163 38.7
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 1.3e-14 85.5 118 46.6
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 1.8e-13 81.6 114 44.7
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 7.7e-12 76.3 54 59.3
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 7.7e-12 76.3 54 59.3
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 1.3e-11 75.5 99 45.5
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 5.0e-11 73.6 214 29.9
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 8.5e-11 72.8 207 30.9
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 4.2e-10 70.5 49 65.3
C07p16940 Brassica napus HOM05D003649 ORTHO05D027520 6.1e-09 66.6 135 36.3
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 8.0e-09 66.2 39 79.5
C07p16900 Brassica napus HOM05D003649 ORTHO05D040526 2.8e-06 57.8 86 43.0


User provided reference genes

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