Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34454 Trifolium pratense HOM05D004497 ORTHO05D005539 3.5e-232 808.1 467 100.0
Medtr7g106650 Medicago truncatula HOM05D004497 ORTHO05D005539 2.7e-208 728.8 431 84.9
Psat3g028160 Pisum sativum HOM05D004497 ORTHO05D005539 8.6e-207 723.8 431 85.2
Ca_04603_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 1.1e-201 706.8 431 83.1
Ca_09070_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 3.5e-200 701.8 431 82.8
Lj1g0020744 Lotus japonicus HOM05D004497 ORTHO05D005539 1.4e-180 636.7 432 74.5
Glyma.16G034400 Glycine max HOM05D004497 ORTHO05D005539 6.0e-176 621.3 432 73.1
Lalb_Chr03g0040831 Lupinus albus HOM05D004497 ORTHO05D005539 2.1e-173 612.8 418 71.8
arahy.Tifrunner.gnm1.ann1.0L2FVX Arachis hypogaea HOM05D004497 ORTHO05D005539 5.2e-172 608.2 426 71.8
arahy.Tifrunner.gnm1.ann1.16KDXT Arachis hypogaea HOM05D004497 ORTHO05D005539 9.9e-171 604.0 426 71.1
VMungo0331G1674 Vigna mungo HOM05D004497 ORTHO05D005539 1.1e-166 590.5 432 70.1
Glyma.07G068400 Glycine max HOM05D004497 ORTHO05D005539 4.4e-163 578.6 358 79.6
Phvul.003G017500 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 4.2e-161 572.0 377 73.7
RcHm_v2.0_Chr7g0190661 Rosa chinensis HOM05D004497 ORTHO05D005539 1.2e-152 543.9 419 64.7
Actinidia25597 Actinidia chinensis HOM05D004497 ORTHO05D005539 2.1e-152 543.1 428 63.3
Cfa013402 Carpinus fangiana HOM05D004497 ORTHO05D005539 2.3e-151 539.7 381 68.2
CSS0032894 Camellia sinensis var. sinensis HOM05D004497 ORTHO05D005539 3.9e-151 538.9 381 68.5
CiPaw.08G116800 Carya illinoinensis HOM05D004497 ORTHO05D005539 5.1e-151 538.5 431 63.1
FvH4_5g07760 Fragaria vesca HOM05D004497 ORTHO05D005539 8.7e-151 537.7 372 70.2
Haze_07247 Corylus avellana HOM05D004497 ORTHO05D005539 1.5e-150 537.0 355 70.7
FAN18G2816 Fragaria x ananassa HOM05D004497 ORTHO05D005539 1.9e-150 536.6 372 69.9
HanXRQChr05g0153981 Helianthus annuus HOM05D004497 ORTHO05D005539 2.8e-149 532.7 376 67.3
FAN08G0052 Fragaria x ananassa HOM05D004497 ORTHO05D005539 4.8e-149 531.9 372 69.6
GSVIVG01013111001 Vitis vinifera HOM05D004497 ORTHO05D005539 4.8e-149 531.9 379 67.0
Rhsim08G0187300 Rhododendron simsii HOM05D004497 ORTHO05D005539 1.1e-148 530.8 355 70.7
Thecc.03G125300 Theobroma cacao HOM05D004497 ORTHO05D005539 2.4e-148 529.6 415 63.1
QL10p004476 Quercus lobata HOM05D004497 ORTHO05D005539 3.1e-148 529.3 419 63.7
FAN04G2053 Fragaria x ananassa HOM05D004497 ORTHO05D005539 6.9e-148 528.1 372 69.1
QL93p0225_0015 Quercus lobata HOM05D004497 ORTHO05D005539 1.7e-146 523.5 419 62.8
Gohir.D09G246800 Gossypium hirsutum HOM05D004497 ORTHO05D005539 2.9e-146 522.7 431 61.7
Nitab4.5_0002978g0150 Nicotiana tabacum HOM05D004497 ORTHO05D005539 3.8e-146 522.3 360 68.6
Nitab4.5_0000903g0080 Nicotiana tabacum HOM05D004497 ORTHO05D005539 4.9e-146 521.9 355 69.0
Gohir.A09G246200 Gossypium hirsutum HOM05D004497 ORTHO05D005539 8.4e-146 521.2 419 63.0
QL07p000007 Quercus lobata HOM05D004497 ORTHO05D005539 8.4e-146 521.2 419 62.5
Gorai.006G271300 Gossypium raimondii HOM05D004497 ORTHO05D005539 1.4e-145 520.4 418 62.7
Duzib205G0501 Durio zibethinus HOM05D004497 ORTHO05D005539 5.5e-145 518.5 419 61.8
COL.COLO4_28066 Corchorus olitorius HOM05D004497 ORTHO05D005539 7.1e-145 518.1 377 66.0
Atru.chr3.3406 Acer truncatum HOM05D004497 ORTHO05D005539 9.3e-145 517.7 435 62.1
CsaV3_1G009480 Cucumis sativus L. HOM05D004497 ORTHO05D005539 9.3e-145 517.7 416 61.1
CANSAT56G3508 Cannabis sativa HOM05D004497 ORTHO05D005539 4.6e-144 515.4 359 69.4
vmacro20468 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 3.0e-143 512.7 450 57.6
TWI14G0260 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 8.7e-143 511.1 432 58.8
Lsat_1_v5_gn_5_13520 Lactuca sativa HOM05D004497 ORTHO05D005539 1.1e-142 510.8 377 65.5
Potri.015G092400 Populus trichocarpa HOM05D004497 ORTHO05D005539 1.9e-142 510.0 413 61.5
QL04p081834 Quercus lobata HOM05D004497 ORTHO05D005539 4.3e-142 508.8 433 60.3
Sc10g0010400 Simmondsia chinensis HOM05D004497 ORTHO05D005539 1.6e-141 506.9 358 66.8
Gohir.A12G276900 Gossypium hirsutum HOM05D004497 ORTHO05D005539 3.7e-141 505.8 359 67.7
MD14G1161100 Malus domestica HOM05D004497 ORTHO05D005539 3.7e-141 505.8 360 68.1
Sopen08g004010 Solanum pennellii HOM05D004497 ORTHO05D005539 3.7e-141 505.8 373 66.2
Solyc08g008160.4 Solanum lycopersicum HOM05D004497 ORTHO05D005539 6.2e-141 505.0 377 65.8
Potri.012G095100 Populus trichocarpa HOM05D004497 ORTHO05D005539 1.1e-140 504.2 427 63.0
Sabra15G0114200 Salix brachista HOM05D004497 ORTHO05D005539 1.1e-140 504.2 416 60.3
PGSC0003DMG400005828 Solanum tuberosum HOM05D004497 ORTHO05D005539 1.4e-140 503.8 377 65.3
ClCG03G003620 Citrullus lanatus HOM05D004497 ORTHO05D005539 5.3e-140 501.9 432 58.3
Sed0020059 Sechium edule HOM05D004497 ORTHO05D005539 6.9e-140 501.5 379 63.6
TAR629G1275 Trochodendron aralioides HOM05D004497 ORTHO05D005539 1.5e-139 500.4 373 64.9
ECA246G4485 Erigeron canadensis HOM05D004497 ORTHO05D005539 2.6e-139 499.6 381 64.3
FAN13G1359 Fragaria x ananassa HOM05D004497 ORTHO05D005539 4.5e-139 498.8 379 65.4
TAR625G0069 Trochodendron aralioides HOM05D004497 ORTHO05D005539 5.8e-139 498.4 354 67.5
Ciclev10020238m.g Citrus clementina HOM05D004497 ORTHO05D005539 2.9e-138 496.1 371 66.3
MD06G1147200 Malus domestica HOM05D004497 ORTHO05D005539 5.0e-138 495.4 430 59.1
Peaxi162Scf00078g00424 Petunia axillaris HOM05D004497 ORTHO05D005539 6.5e-138 495.0 339 69.0
Migut.I00519 Erythranthe guttata HOM05D004497 ORTHO05D005539 8.4e-138 494.6 377 64.5
MELO3C002347.2 Cucumis melo HOM05D004497 ORTHO05D005539 1.1e-137 494.2 340 68.2
Eucgr.C01065 Eucalyptus grandis HOM05D004497 ORTHO05D005539 1.4e-137 493.8 446 57.4
EL10As4g23444 Beta vulgaris HOM05D004497 ORTHO05D005539 5.5e-137 491.9 422 61.4
Cc05_g04600 Coffea canephora HOM05D004497 ORTHO05D005539 7.1e-137 491.5 414 60.6
Nn4g26409 Nelumbo nucifera HOM05D004497 ORTHO05D005539 1.6e-136 490.3 359 65.7
Lj9A476T57 Lonicera japonica HOM05D004497 ORTHO05D005539 6.1e-136 488.4 340 67.1
THA.LOC104820611 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 6.1e-136 488.4 372 64.5
Eucgr.K00186 Eucalyptus grandis HOM05D004497 ORTHO05D005539 1.8e-135 486.9 444 56.5
SGA_v2.0_scaffold215G42316 Striga asiatica HOM05D004497 ORTHO05D005539 3.0e-135 486.1 356 65.2
Dinv04858 Davidia involucrata HOM05D004497 ORTHO05D005539 5.1e-135 485.3 321 72.0
Hund03342 Selenicereus undatus HOM05D004497 ORTHO05D005539 5.1e-135 485.3 359 66.0
PSO063G4711 Papaver somniferum HOM05D004497 ORTHO05D005539 5.7e-134 481.9 377 63.7
Ah.08g212900 Amaranthus hybridus HOM05D004497 ORTHO05D005539 2.2e-133 479.9 362 66.3
PSO782G0077 Papaver somniferum HOM05D004497 ORTHO05D005539 2.8e-133 479.6 377 63.4
PGR083G2085 Punica granatum HOM05D004497 ORTHO05D005539 8.2e-133 478.0 433 57.5
Manes.14G053800 Manihot esculenta HOM05D004497 ORTHO05D005539 1.1e-132 477.6 348 66.1
MSTRG.22910 Avicennia marina HOM05D004497 ORTHO05D005539 1.4e-132 477.2 430 57.2
Aqoxy5G03475 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 1.8e-132 476.9 378 60.1
MBI11_g15865_MAGBIO Magnolia biondii HOM05D004497 ORTHO05D005539 2.4e-132 476.5 372 62.1
Dinv11148 Davidia involucrata HOM05D004497 ORTHO05D005539 3.1e-132 476.1 410 59.8
SalBow8G1477 Salvia bowleyana HOM05D004497 ORTHO05D005539 2.2e-130 469.9 429 57.3
SalBow5G0098 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.0e-127 461.1 455 54.7
SalBow5G4825 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.0e-127 461.1 455 54.7
Oeu005018.3 Olea europaea HOM05D004497 ORTHO05D005539 1.8e-127 460.3 421 55.1
THA.LOC104814264 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 1.1e-126 457.6 355 62.5
Carub.0001s2754 Capsella rubella HOM05D004497 ORTHO05D005539 3.4e-123 446.0 417 56.6
CDE08G0729 Ceratophyllum demersum HOM05D004497 ORTHO05D005539 5.9e-123 445.3 378 57.1
AT1G29320 Arabidopsis thaliana HOM05D004497 ORTHO05D005539 1.4e-121 440.7 434 53.9
Thhalv10007651m.g Eutrema salsugineum HOM05D004497 ORTHO05D005539 3.2e-121 439.5 428 55.6
AL1G43130 Arabidopsis lyrata HOM05D004497 ORTHO05D005539 7.2e-121 438.3 431 54.1
CARHR028640 Cardamine hirsuta HOM05D004497 ORTHO05D005539 2.7e-120 436.4 433 53.3
Sp1g25270 Schrenkiella parvula HOM05D004497 ORTHO05D005539 6.1e-120 435.3 359 59.3
A08p25140 Brassica napus HOM05D004497 ORTHO05D005539 7.9e-120 434.9 359 59.3
AUR62025903 Chenopodium quinoa HOM05D004497 ORTHO05D005539 7.9e-120 434.9 415 55.9
BraA09t39216Z Brassica rapa HOM05D004497 ORTHO05D005539 1.8e-119 433.7 376 56.6
BolC3t19835H Brassica oleracea HOM05D004497 ORTHO05D005539 6.7e-119 431.8 359 58.5
TWI39G1139 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 1.1e-118 431.0 406 56.2
HPP92_023861 Vanilla planifolia HOM05D004497 ORTHO05D005539 3.3e-118 429.5 356 56.2
BcaC01g00099 Brassica carinata HOM05D004497 ORTHO05D005539 5.7e-118 428.7 359 58.2
C03p75750 Brassica napus HOM05D004497 ORTHO05D005539 1.3e-117 427.6 359 57.9
ATR0171G018 Amborella trichopoda HOM05D004497 ORTHO05D005539 2.8e-117 426.4 360 55.3
Prupe.1G584300 Prunus persica HOM05D004497 ORTHO05D005539 2.8e-117 426.4 360 60.8
BcaB03g12154 Brassica carinata HOM05D004497 ORTHO05D005539 4.8e-117 425.6 360 57.8
C05p28100 Brassica napus HOM05D004497 ORTHO05D005539 1.4e-116 424.1 376 56.1
BcaC05g26958 Brassica carinata HOM05D004497 ORTHO05D005539 1.8e-116 423.7 376 56.1
BolC5t31537H Brassica oleracea HOM05D004497 ORTHO05D005539 1.8e-116 423.7 379 56.2
Zm00001eb105680 Zea mays HOM05D004497 ORTHO05D005539 2.0e-115 420.2 361 57.1
Aa31LG6G6220 Aethionema arabicum HOM05D004497 ORTHO05D005539 4.5e-115 419.1 358 59.2
A09p36980 Brassica napus HOM05D004497 ORTHO05D005539 4.5e-115 419.1 379 55.4
BraA08t34469Z Brassica rapa HOM05D004497 ORTHO05D005539 1.0e-114 417.9 386 54.7
DCAR_012679 Daucus carota HOM05D004497 ORTHO05D005539 2.2e-114 416.8 354 58.2
BcaB07g32523 Brassica carinata HOM05D004497 ORTHO05D005539 8.5e-114 414.8 361 57.6
Cfa014010 Carpinus fangiana HOM05D004497 ORTHO05D005539 1.9e-113 413.7 420 52.4
Cpa.g.sc166.23 Carica papaya HOM05D004497 ORTHO05D005539 1.2e-112 411.0 291 67.7
CiPaw.11G010200 Carya illinoinensis HOM05D004497 ORTHO05D005539 4.7e-112 409.1 358 58.4
SEGI_30468 Sequoiadendron giganteum HOM05D004497 ORTHO05D005539 5.2e-111 405.6 380 50.0
AUR62025086 Chenopodium quinoa HOM05D004497 ORTHO05D005539 3.3e-110 402.9 448 51.1
Duzib068G0683 Durio zibethinus HOM05D004497 ORTHO05D005539 3.7e-109 399.4 290 66.6
AUR62032705 Chenopodium quinoa HOM05D004497 ORTHO05D005539 9.1e-108 394.8 445 49.7
Sed0003097 Sechium edule HOM05D004497 ORTHO05D005539 3.8e-106 389.4 307 60.9
SHI10599 Sapria himalayana HOM05D004497 ORTHO05D005539 3.1e-100 369.8 321 56.7
Sabra12G0069700 Salix brachista HOM05D004497 ORTHO05D005539 4.0e-95 352.8 291 60.5
Aqoxy5G03495 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 2.8e-93 346.7 293 57.7
unitig_699.g19657 Utricularia gibba HOM05D004497 ORTHO05D005539 3.7e-93 346.3 431 45.9
Mapoly0079s0016 Marchantia polymorpha HOM05D004497 ORTHO05D005539 6.6e-90 335.5 375 44.3
Pp3c13_24500 Physcomitrium patens HOM05D004497 ORTHO05D005539 3.3e-89 333.2 376 44.9
AUR62025094 Chenopodium quinoa HOM05D004497 ORTHO05D005539 7.2e-89 332.0 291 58.1
Os07g0506700 Oryza sativa ssp. japonica HOM05D004497 ORTHO05D005539 4.6e-83 312.8 295 53.6
SMO165G0173 Selaginella moellendorffii HOM05D004497 ORTHO05D005539 1.1e-81 308.1 369 45.8
Nitab4.5_0003013g0030 Nicotiana tabacum HOM05D004497 ORTHO05D005539 2.9e-77 293.5 341 50.1
Zm00001eb322320 Zea mays HOM05D004497 ORTHO05D005539 2.3e-71 273.9 200 62.0
vmacro19222 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 3.7e-69 266.5 341 44.0
Ca_16680_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000496 1.7e-66 257.7 130 93.8
AUR62029644 Chenopodium quinoa HOM05D004497 ORTHO05D005539 6.0e-59 232.6 228 55.3
Actinidia19491 Actinidia chinensis HOM05D004497 ORTHO05D005539 2.5e-57 227.3 320 43.1
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 4.0e-55 219.9 302 41.1
RcHm_v2.0_Chr0c30g0501231 Rosa chinensis HOM05D004497 ORTHO05D005539 4.9e-53 213.0 372 37.9
RcHm_v2.0_Chr3g0452771 Rosa chinensis HOM05D004497 ORTHO05D005539 4.9e-53 213.0 372 37.9
CBR_g31949 Chara braunii HOM05D004497 ORTHO05D005539 1.5e-49 201.4 358 35.5
SalBow8G1815 Salvia bowleyana HOM05D004497 ORTHO05D005539 2.5e-49 200.7 194 56.2
AUR62025088 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.8e-47 194.5 230 47.8
RcHm_v2.0_Chr5g0041021 Rosa chinensis HOM05D004497 ORTHO05D005539 1.0e-42 178.7 368 35.1
AUR62025079 Chenopodium quinoa HOM05D004497 ORTHO05D005539 3.9e-34 150.2 117 59.8
Cre17.g718650 Chlamydomonas reinhardtii HOM05D004497 ORTHO05D005539 1.4e-23 115.2 374 23.8
MCO03G018 Micromonas commoda HOM05D004497 ORTHO05D005539 1.5e-22 111.7 371 24.8
TAR371G1248 Trochodendron aralioides HOM05D004497 ORTHO05D005539 2.6e-22 110.9 122 49.2
Gohir.D13G181701 Gossypium hirsutum HOM05D004497 ORTHO05D005539 6.5e-21 106.3 105 54.3
Oeu006698.1 Olea europaea HOM05D004497 ORTHO05D005539 6.7e-18 96.3 71 66.2
Phvul.003G017700 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 9.7e-17 92.4 75 65.3
AUR62025092 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.2e-16 91.3 53 79.2
PRCOL_00003967 Prasinoderma coloniale HOM05D004497 ORTHO05D005539 2.2e-16 91.3 240 26.2
C04p39580 Brassica napus HOM05D004497 ORTHO05D005539 2.9e-13 80.9 83 50.6
BolC4t25523H Brassica oleracea HOM05D004497 ORTHO05D005539 2.9e-13 80.9 83 50.6
COL.COLO4_36170 Corchorus olitorius HOM05D021494 ORTHO05D022415 2.5e-09 67.8 41 78.0
arahy.Tifrunner.gnm1.ann1.FTJQ4M Arachis hypogaea HOM05D004497 ORTHO05D005539 2.8e-08 64.3 55 60.0
ECA248G2349 Erigeron canadensis HOM05D000041 ORTHO05D000452 3.4e-06 57.4 84 39.3


User provided reference genes

Program Settings