Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 4.2e-124 448.0 217 100.0
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 1.1e-47 194.1 98 95.9
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 1.5e-25 120.6 63 88.9
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 1.5e-25 120.6 63 88.9
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 2.2e-24 116.7 63 87.3
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 2.2e-24 116.7 63 84.1
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 5.1e-21 105.5 63 79.4
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 1.9e-20 103.6 63 76.2
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 2.5e-20 103.2 63 76.2
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 2.5e-20 103.2 63 76.2
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 1.1e-18 97.8 63 71.4
TPR.G17830 Trifolium pratense HOM05D000254 ORTHO05D031004 2.4e-18 96.7 87 57.5
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 6.9e-18 95.1 63 69.8
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 6.9e-18 95.1 63 69.8
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 1.5e-17 94.0 63 71.4
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 2.0e-17 93.6 64 68.8
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 2.0e-17 93.6 74 62.2
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 2.6e-17 93.2 63 71.4
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 3.4e-17 92.8 75 58.7
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 4.5e-17 92.4 63 71.4
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 4.5e-17 92.4 71 62.0
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 5.9e-17 92.0 63 73.0
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 5.9e-17 92.0 71 63.4
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 1.3e-16 90.9 66 66.7
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 1.3e-16 90.9 63 69.8
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 1.7e-16 90.5 63 68.3
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 1.7e-16 90.5 63 68.3
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 2.9e-16 89.7 63 68.3
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 3.8e-16 89.4 63 66.7
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 3.8e-16 89.4 71 63.4
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 3.8e-16 89.4 63 69.8
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 5.0e-16 89.0 65 67.7
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 5.0e-16 89.0 63 69.8
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 5.0e-16 89.0 63 69.8
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 6.5e-16 88.6 63 68.3
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 6.5e-16 88.6 64 70.3
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 6.5e-16 88.6 63 69.8
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 6.5e-16 88.6 63 68.3
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 8.5e-16 88.2 63 66.7
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 8.5e-16 88.2 63 66.7
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 8.5e-16 88.2 63 66.7
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 8.5e-16 88.2 64 67.2
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 8.5e-16 88.2 64 67.2
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 1.1e-15 87.8 63 69.8
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.1e-15 87.8 63 69.8
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.1e-15 87.8 63 69.8
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.1e-15 87.8 63 69.8
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 1.4e-15 87.4 65 66.2
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 1.4e-15 87.4 63 65.1
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.9e-15 87.0 63 68.3
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 4.2e-15 85.9 63 61.9
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 9.4e-15 84.7 65 63.1
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 9.4e-15 84.7 80 51.2
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 9.4e-15 84.7 64 65.6
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 9.4e-15 84.7 63 60.3
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 9.4e-15 84.7 63 61.9
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 1.2e-14 84.3 63 61.9
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.6e-14 84.0 63 68.3
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 2.1e-14 83.6 65 61.5
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 2.7e-14 83.2 68 58.8
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 4.6e-14 82.4 63 61.9
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 4.6e-14 82.4 64 65.6
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 6.1e-14 82.0 63 63.5
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 7.9e-14 81.6 64 64.1
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 7.9e-14 81.6 64 64.1
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 1.0e-13 81.3 63 61.9
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 1.0e-13 81.3 63 60.3
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 1.0e-13 81.3 63 61.9
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.4e-13 80.9 63 61.9
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 1.4e-13 80.9 80 51.2
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 1.8e-13 80.5 63 57.1
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 1.8e-13 80.5 63 65.1
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 2.3e-13 80.1 63 57.1
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 2.3e-13 80.1 63 57.1
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 2.3e-13 80.1 63 60.3
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 3.9e-13 79.3 64 60.9
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 5.1e-13 79.0 63 55.6
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 5.1e-13 79.0 63 55.6
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 5.1e-13 79.0 63 60.3
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 6.7e-13 78.6 63 57.1
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 8.8e-13 78.2 63 60.3
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 8.8e-13 78.2 63 55.6
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 8.8e-13 78.2 63 55.6
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 8.8e-13 78.2 63 60.3
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 8.8e-13 78.2 91 46.2
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 8.8e-13 78.2 63 61.9
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 1.5e-12 77.4 73 50.7
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 1.5e-12 77.4 65 60.0
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 2.0e-12 77.0 63 57.1
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 2.6e-12 76.6 63 58.7
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 2.6e-12 76.6 63 57.1
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 2.6e-12 76.6 60 63.3
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 3.3e-12 76.3 63 60.3
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 4.4e-12 75.9 63 58.7
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 7.4e-12 75.1 63 54.0
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 1.3e-11 74.3 63 58.7
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 1.3e-11 74.3 64 59.4
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 1.7e-11 73.9 63 57.1
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 1.7e-11 73.9 63 57.1
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 2.2e-11 73.6 60 63.3
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 6.3e-11 72.0 63 57.1
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 1.8e-10 70.5 63 54.0
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 1.8e-10 70.5 63 50.8
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 1.8e-10 70.5 63 54.0
AUR62039605 Chenopodium quinoa HOM05D052022 ORTHO05D031004 1.2e-09 67.8 122 35.2
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 1.0e-08 64.7 48 66.7
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 1.9e-07 60.5 56 55.4
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.9e-07 60.5 35 77.1
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 3.6e-06 56.2 108 36.1


User provided reference genes

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