Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34370 Trifolium pratense HOM05D004169 ORTHO05D004942 3.0e-43 177.9 81 100.0
TPR.G34338 Trifolium pratense HOM05D004169 ORTHO05D004942 2.2e-33 145.2 73 91.8
Psat6g005200 Pisum sativum HOM05D004169 ORTHO05D004942 1.4e-32 142.5 73 89.0
Medtr1g023340 Medicago truncatula HOM05D004169 ORTHO05D004942 2.4e-32 141.7 73 89.0
Ca_13394_v3 Cicer arietinum L. HOM05D004169 ORTHO05D004942 9.2e-32 139.8 73 89.0
Lalb_Chr22g0354451 Lupinus albus HOM05D004169 ORTHO05D004942 1.7e-30 135.6 73 82.2
PGR083G1299 Punica granatum HOM05D004169 ORTHO05D004942 2.3e-30 135.2 73 83.6
Glyma.14G216800 Glycine max HOM05D004169 ORTHO05D004942 2.9e-30 134.8 73 83.6
Atru.chr13.351 Acer truncatum HOM05D004169 ORTHO05D004942 3.8e-30 134.4 73 82.2
arahy.Tifrunner.gnm1.ann1.T5GNGC Arachis hypogaea HOM05D004169 ORTHO05D004942 6.6e-30 133.7 73 83.6
Ciclev10001334m.g Citrus clementina HOM05D004169 ORTHO05D004942 8.6e-30 133.3 73 80.8
Medtr3g113160 Medicago truncatula HOM05D004169 ORTHO05D004942 1.1e-29 132.9 73 80.8
Ca_02057_v3 Cicer arietinum L. HOM05D004169 ORTHO05D004942 1.5e-29 132.5 73 80.8
Glyma.04G026500 Glycine max HOM05D004169 ORTHO05D004942 1.5e-29 132.5 73 78.1
Ah.05g171900 Amaranthus hybridus HOM05D004169 ORTHO05D004942 2.5e-29 131.7 73 80.8
Lj5g0006972 Lotus japonicus HOM05D004169 ORTHO05D004942 2.5e-29 131.7 73 82.2
arahy.Tifrunner.gnm1.ann1.SD0DCP Arachis hypogaea HOM05D004169 ORTHO05D004942 3.3e-29 131.3 73 82.2
Hund26864 Selenicereus undatus HOM05D004169 ORTHO05D004942 3.3e-29 131.3 73 78.1
Lj1g0021833 Lotus japonicus HOM05D004169 ORTHO05D004942 4.3e-29 131.0 73 80.8
Manes.18G017100 Manihot esculenta HOM05D004169 ORTHO05D004942 4.3e-29 131.0 73 80.8
GSVIVG01009830001 Vitis vinifera HOM05D004169 ORTHO05D004942 5.6e-29 130.6 73 80.8
TPR.G30291 Trifolium pratense HOM05D004169 ORTHO05D004942 7.3e-29 130.2 73 80.8
Lalb_Chr08g0246061 Lupinus albus HOM05D004169 ORTHO05D004942 9.5e-29 129.8 73 78.1
VMungo1309G1829 Vigna mungo HOM05D004169 ORTHO05D004942 9.5e-29 129.8 73 79.5
arahy.Tifrunner.gnm1.ann1.3VK2QG Arachis hypogaea HOM05D004169 ORTHO05D004942 1.2e-28 129.4 73 80.8
arahy.Tifrunner.gnm1.ann1.CMA0H9 Arachis hypogaea HOM05D004169 ORTHO05D004942 1.2e-28 129.4 73 80.8
EL10Ac1g00441 Beta vulgaris HOM05D004169 ORTHO05D004942 1.6e-28 129.0 73 80.8
AUR62014419 Chenopodium quinoa HOM05D004169 ORTHO05D004942 1.6e-28 129.0 73 78.1
TWI56G0721 Tripterygium wilfordii HOM05D004169 ORTHO05D004942 1.6e-28 129.0 73 76.7
Cc10_g02050 Coffea canephora HOM05D004169 ORTHO05D004942 2.1e-28 128.6 73 78.1
Glyma.17G255400 Glycine max HOM05D004169 ORTHO05D004942 2.1e-28 128.6 73 79.5
Phvul.001G009400 Phaseolus vulgaris HOM05D004169 ORTHO05D004942 2.1e-28 128.6 73 79.5
Potri.002G027300 Populus trichocarpa HOM05D004169 ORTHO05D004942 2.1e-28 128.6 73 76.7
Oeu047750.1 Olea europaea HOM05D004169 ORTHO05D004942 2.8e-28 128.3 73 78.1
Haze_22591 Corylus avellana HOM05D004169 ORTHO05D004942 6.1e-28 127.1 73 79.5
Oeu030387.1 Olea europaea HOM05D004169 ORTHO05D004942 6.1e-28 127.1 73 76.7
Oeu030389.1 Olea europaea HOM05D004169 ORTHO05D004942 6.1e-28 127.1 73 76.7
RcHm_v2.0_Chr6g0302201 Rosa chinensis HOM05D004169 ORTHO05D004942 6.1e-28 127.1 73 76.7
CANSAT35G1895 Cannabis sativa HOM05D004169 ORTHO05D004942 8.0e-28 126.7 73 78.1
FvH4_2g39100 Fragaria vesca HOM05D004169 ORTHO05D004942 1.0e-27 126.3 73 75.3
FAN15G3243 Fragaria x ananassa HOM05D004169 ORTHO05D004942 1.0e-27 126.3 73 75.3
FAN20G1955 Fragaria x ananassa HOM05D004169 ORTHO05D004942 1.0e-27 126.3 73 75.3
Sabra02G0021500 Salix brachista HOM05D004169 ORTHO05D004942 1.0e-27 126.3 73 75.3
TAR628G0735 Trochodendron aralioides HOM05D004169 ORTHO05D004942 1.0e-27 126.3 73 75.3
AUR62019155 Chenopodium quinoa HOM05D004169 ORTHO05D004942 1.4e-27 125.9 73 76.7
Cfa013911 Carpinus fangiana HOM05D004169 ORTHO05D004942 1.8e-27 125.6 73 78.1
VMungo0647G1986 Vigna mungo HOM05D004169 ORTHO05D004942 1.8e-27 125.6 73 79.5
TWI12G0121 Tripterygium wilfordii HOM05D004169 ORTHO05D004942 2.3e-27 125.2 71 76.1
ClCG08G014480 Citrullus lanatus HOM05D004169 ORTHO05D004942 4.0e-27 124.4 73 75.3
Potri.005G235200 Populus trichocarpa HOM05D004169 ORTHO05D004942 4.0e-27 124.4 73 75.3
Prupe.1G370200 Prunus persica HOM05D004169 ORTHO05D004942 4.0e-27 124.4 73 76.7
Atru.chr13.350 Acer truncatum HOM05D004169 ORTHO05D004942 1.2e-26 122.9 73 74.0
Duzib093G0775 Durio zibethinus HOM05D004169 ORTHO05D004942 1.2e-26 122.9 73 75.3
Lj4C791T8 Lonicera japonica HOM05D004169 ORTHO05D004942 1.2e-26 122.9 73 75.3
Hma1.2p1_1386F.1_g279800 Hydrangea macrophylla HOM05D004169 ORTHO05D004942 1.5e-26 122.5 73 74.0
QL02p010782 Quercus lobata HOM05D004169 ORTHO05D004942 1.5e-26 122.5 74 75.7
Dinv39491 Davidia involucrata HOM05D004169 ORTHO05D004942 2.0e-26 122.1 73 74.0
Nn5g29242 Nelumbo nucifera HOM05D004169 ORTHO05D004942 2.0e-26 122.1 73 74.0
Sed0010010 Sechium edule HOM05D004169 ORTHO05D004942 2.0e-26 122.1 73 71.2
Migut.C00795 Erythranthe guttata HOM05D004169 ORTHO05D004942 2.6e-26 121.7 73 74.0
Sc15g0002560 Simmondsia chinensis HOM05D004169 ORTHO05D004942 2.6e-26 121.7 73 75.3
COL.COLO4_26191 Corchorus olitorius HOM05D004169 ORTHO05D004942 3.4e-26 121.3 73 74.0
CAN.G541.46 Capsicum annuum HOM05D004169 ORTHO05D004942 4.4e-26 120.9 73 75.3
SGA_v2.0_scaffold17G08098 Striga asiatica HOM05D004169 ORTHO05D004942 4.4e-26 120.9 73 71.2
Eucgr.F01623 Eucalyptus grandis HOM05D004169 ORTHO05D004942 5.7e-26 120.6 73 74.0
Cpa.g.sc140.24 Carica papaya HOM05D004169 ORTHO05D004942 7.5e-26 120.2 73 74.0
Thecc.08G038200 Theobroma cacao HOM05D004169 ORTHO05D004942 7.5e-26 120.2 73 72.6
Actinidia22490 Actinidia chinensis HOM05D004169 ORTHO05D004942 9.8e-26 119.8 73 69.9
Actinidia22492 Actinidia chinensis HOM05D004169 ORTHO05D004942 9.8e-26 119.8 73 69.9
MSTRG.1220 Avicennia marina HOM05D004169 ORTHO05D004942 9.8e-26 119.8 73 71.2
Duzib116G0263 Durio zibethinus HOM05D004169 ORTHO05D004942 9.8e-26 119.8 73 72.6
Aqoxy6G02346 Aquilegia oxysepala HOM05D004169 ORTHO05D004942 1.3e-25 119.4 73 74.0
CSS0042982 Camellia sinensis var. sinensis HOM05D004169 ORTHO05D004942 1.3e-25 119.4 73 69.9
CSS0046054 Camellia sinensis var. sinensis HOM05D004169 ORTHO05D004942 1.3e-25 119.4 73 69.9
Gohir.A05G188120 Gossypium hirsutum HOM05D004169 ORTHO05D004942 1.3e-25 119.4 73 74.0
Sopen07g015700 Solanum pennellii HOM05D004169 ORTHO05D004942 1.7e-25 119.0 73 74.0
CsaV3_2G029300 Cucumis sativus L. HOM05D004169 ORTHO05D004942 2.2e-25 118.6 73 72.6
Hma1.2p1_0773F.1_g216220 Hydrangea macrophylla HOM05D004169 ORTHO05D004942 2.2e-25 118.6 73 75.3
ATR0149G003 Amborella trichopoda HOM05D004169 ORTHO05D004942 2.9e-25 118.2 73 72.6
Migut.N03135 Erythranthe guttata HOM05D004169 ORTHO05D004942 2.9e-25 118.2 73 74.0
DCAR_013851 Daucus carota HOM05D004169 ORTHO05D004942 3.7e-25 117.9 73 71.2
MELO3C010990.2 Cucumis melo HOM05D004169 ORTHO05D004942 4.9e-25 117.5 67 76.1
Sabra05G0181500 Salix brachista HOM05D004169 ORTHO05D004942 4.9e-25 117.5 73 71.2
TAR376G0386 Trochodendron aralioides HOM05D004169 ORTHO05D004942 4.9e-25 117.5 73 69.9
CiPaw.07G153600 Carya illinoinensis HOM05D004169 ORTHO05D004942 6.4e-25 117.1 73 69.9
Solyc07g032180.3 Solanum lycopersicum HOM05D004169 ORTHO05D004942 6.4e-25 117.1 73 72.6
Actinidia37978 Actinidia chinensis HOM05D004169 ORTHO05D004942 8.3e-25 116.7 73 71.2
MD00G1162000 Malus domestica HOM05D004169 ORTHO05D004942 8.3e-25 116.7 73 71.2
MD08G1017500 Malus domestica HOM05D004169 ORTHO05D004942 8.3e-25 116.7 73 71.2
Nitab4.5_0004368g0020 Nicotiana tabacum HOM05D004169 ORTHO05D004942 8.3e-25 116.7 73 68.5
Dinv31815 Davidia involucrata HOM05D004169 ORTHO05D004942 1.1e-24 116.3 73 71.2
Phvul.009G014600 Phaseolus vulgaris HOM05D004169 ORTHO05D004942 1.1e-24 116.3 67 77.6
Gorai.009G196500 Gossypium raimondii HOM05D004169 ORTHO05D004942 1.4e-24 115.9 73 71.2
MD15G1016400 Malus domestica HOM05D004169 ORTHO05D004942 1.4e-24 115.9 73 69.9
Actinidia15392 Actinidia chinensis HOM05D004169 ORTHO05D004942 1.8e-24 115.5 73 67.1
Peaxi162Scf00186g00012 Petunia axillaris HOM05D004169 ORTHO05D004942 1.8e-24 115.5 73 67.1
Aa31sc185G60 Aethionema arabicum HOM05D004169 ORTHO05D004942 2.4e-24 115.2 69 72.5
THA.LOC104804855 Tarenaya hassleriana HOM05D004169 ORTHO05D004942 2.4e-24 115.2 73 71.2
Nitab4.5_0000352g0020 Nicotiana tabacum HOM05D004169 ORTHO05D004942 3.2e-24 114.8 69 69.6
vmacro04328 Vaccinium macrocarpon HOM05D004169 ORTHO05D004942 3.2e-24 114.8 73 74.0
MSTRG.24262 Avicennia marina HOM05D004169 ORTHO05D004942 7.8e-23 110.2 74 68.9
A03p55080 Brassica napus HOM05D004169 ORTHO05D004942 7.8e-23 110.2 72 70.8
C07p53400 Brassica napus HOM05D004169 ORTHO05D004942 7.8e-23 110.2 72 70.8
BolC7t45834H Brassica oleracea HOM05D004169 ORTHO05D004942 7.8e-23 110.2 72 70.8
BraA03t14568Z Brassica rapa HOM05D004169 ORTHO05D004942 7.8e-23 110.2 72 70.8
Hund17227 Selenicereus undatus HOM05D004169 ORTHO05D004942 1.3e-22 109.4 73 65.8
CARHR231560 Cardamine hirsuta HOM05D004169 ORTHO05D004942 1.7e-22 109.0 71 69.0
unitig_8.g3381 Utricularia gibba HOM05D004169 ORTHO05D004942 1.7e-22 109.0 74 71.6
MBI05_g16274_MAGBIO Magnolia biondii HOM05D004169 ORTHO05D004942 2.3e-22 108.6 75 65.3
BcaC09g50903 Brassica carinata HOM05D004169 ORTHO05D004942 3.0e-22 108.2 65 70.8
Os09g0520200 Oryza sativa ssp. japonica HOM05D004169 ORTHO05D004942 3.0e-22 108.2 74 70.3
unitig_37.g13009 Utricularia gibba HOM05D004169 ORTHO05D004942 5.0e-22 107.5 73 65.8
BcaNung01121 Brassica carinata HOM05D004169 ORTHO05D004942 6.6e-22 107.1 65 69.2
A01p15480 Brassica napus HOM05D004169 ORTHO05D004942 6.6e-22 107.1 65 69.2
C01p19380 Brassica napus HOM05D004169 ORTHO05D004942 6.6e-22 107.1 65 69.2
BraA01t01487Z Brassica rapa HOM05D004169 ORTHO05D004942 6.6e-22 107.1 65 69.2
Sp7g22120 Schrenkiella parvula HOM05D004169 ORTHO05D004942 6.6e-22 107.1 65 69.2
AL7G29130 Arabidopsis lyrata HOM05D004169 ORTHO05D004942 1.5e-21 105.9 70 68.6
HanXRQChr09g0269701 Helianthus annuus HOM05D004169 ORTHO05D004942 1.5e-21 105.9 71 64.8
BolC1t01866H Brassica oleracea HOM05D004169 ORTHO05D004942 1.9e-21 105.5 65 67.7
Zm00001eb102970 Zea mays HOM05D004169 ORTHO05D004942 2.5e-21 105.1 74 67.6
THA.LOC104806900 Tarenaya hassleriana HOM05D004169 ORTHO05D004942 3.3e-21 104.8 76 65.8
AT4G24160 Arabidopsis thaliana HOM05D004169 ORTHO05D004942 9.5e-21 103.2 70 67.1
DCAR_009941 Daucus carota HOM05D004169 ORTHO05D004942 1.6e-20 102.4 73 64.4
vmacro21702 Vaccinium macrocarpon HOM05D004169 ORTHO05D004942 1.6e-20 102.4 73 58.9
HPP92_014629 Vanilla planifolia HOM05D004169 ORTHO05D004942 3.6e-20 101.3 75 61.3
HanXRQChr05g0156291 Helianthus annuus HOM05D004169 ORTHO05D004942 4.7e-20 100.9 73 61.6
Rhsim07G0244700 Rhododendron simsii HOM05D004169 ORTHO05D004942 6.2e-20 100.5 93 54.8
Lsat_1_v5_gn_5_26101 Lactuca sativa HOM05D004169 ORTHO05D004942 1.1e-19 99.8 69 60.9
Thhalv10025308m.g Eutrema salsugineum HOM05D004169 ORTHO05D004942 1.8e-19 99.0 70 65.7
ECA246G0823 Erigeron canadensis HOM05D004169 ORTHO05D004942 2.3e-19 98.6 73 60.3
Carub.0007s1694 Capsella rubella HOM05D004169 ORTHO05D004942 3.1e-19 98.2 70 62.9
ECA232G2227 Erigeron canadensis HOM05D004169 ORTHO05D004942 3.1e-19 98.2 67 62.7
Lsat_1_v5_gn_4_116000 Lactuca sativa HOM05D004169 ORTHO05D004942 8.9e-19 96.7 67 59.7
SEGI_38743 Sequoiadendron giganteum HOM05D004169 ORTHO05D004942 8.9e-19 96.7 70 58.6
PSO541G3059 Papaver somniferum HOM05D004169 ORTHO05D004942 2.0e-18 95.5 74 62.2
PSO675G0784 Papaver somniferum HOM05D004169 ORTHO05D004942 2.0e-18 95.5 74 62.2
Sc26g0003230 Simmondsia chinensis HOM05D004169 ORTHO05D004942 5.8e-18 94.0 59 67.8
AagrBONN_evm.TU.Sc2ySwM_362.1142 Anthoceros agrestis HOM05D004169 ORTHO05D004942 1.9e-16 89.0 71 54.9
BcaNung06401 Brassica carinata HOM05D004169 ORTHO05D004942 1.6e-15 85.9 53 71.7
Mapoly0037s0009 Marchantia polymorpha HOM05D004169 ORTHO05D004942 2.0e-15 85.5 61 60.7
Pp3c9_570 Physcomitrium patens HOM05D004169 ORTHO05D004942 6.6e-14 80.5 58 56.9
Rhsim06G0026100 Rhododendron simsii HOM05D004169 ORTHO05D004942 8.6e-14 80.1 73 54.8
SMO266G0010 Selaginella moellendorffii HOM05D004169 ORTHO05D004942 4.7e-12 74.3 52 59.6
Glyma.06G026500 Glycine max HOM05D004169 ORTHO05D004942 9.9e-10 66.6 31 90.3
CBR_g53937 Chara braunii HOM05D004169 ORTHO05D004942 1.1e-08 63.2 52 48.1
SGA_v2.0_scaffold92G28285 Striga asiatica HOM05D004169 ORTHO05D004942 2.1e-07 58.9 31 80.6


User provided reference genes

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