Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34316 Trifolium pratense HOM05D003982 ORTHO05D004831 2.2e-53 212.2 120 100.0
TPR.G35371 Trifolium pratense HOM05D003982 ORTHO05D004831 2.1e-48 195.7 122 93.4
Medtr2g096300 Medicago truncatula HOM05D003982 ORTHO05D004831 1.8e-36 156.0 83 92.8
Psat5g282440 Pisum sativum HOM05D003982 ORTHO05D004831 9.1e-36 153.7 91 86.8
Lj3g0005665 Lotus japonicus HOM05D003982 ORTHO05D004831 1.9e-33 146.0 94 81.9
arahy.Tifrunner.gnm1.ann1.95NMQN Arachis hypogaea HOM05D003982 ORTHO05D004831 5.5e-33 144.4 92 83.7
arahy.Tifrunner.gnm1.ann1.AUFX4T Arachis hypogaea HOM05D003982 ORTHO05D004831 5.5e-33 144.4 92 83.7
Glyma.15G041700 Glycine max HOM05D003982 ORTHO05D004831 3.6e-32 141.7 94 78.7
Lalb_Chr14g0374961 Lupinus albus HOM05D003982 ORTHO05D004831 1.4e-31 139.8 92 77.2
VMungo1080G1641 Vigna mungo HOM05D003982 ORTHO05D004831 6.7e-31 137.5 94 74.5
Glyma.11G143500 Glycine max HOM05D003982 ORTHO05D004831 2.6e-30 135.6 97 73.2
Atru.chr3.3810 Acer truncatum HOM05D003982 ORTHO05D004831 5.7e-30 134.4 92 77.2
Gohir.A03G038100 Gossypium hirsutum HOM05D003982 ORTHO05D004831 7.4e-30 134.0 78 83.3
Carub.0008s2039 Capsella rubella HOM05D003982 ORTHO05D004831 9.7e-30 133.7 78 83.3
Duzib150G0206 Durio zibethinus HOM05D003982 ORTHO05D004831 9.7e-30 133.7 78 83.3
Thecc.09G328700 Theobroma cacao HOM05D003982 ORTHO05D004831 1.3e-29 133.3 84 76.2
AL8G36260 Arabidopsis lyrata HOM05D003982 ORTHO05D004831 2.2e-29 132.5 78 82.1
AT5G59740 Arabidopsis thaliana HOM05D003982 ORTHO05D004831 2.8e-29 132.1 78 82.1
COL.COLO4_18437 Corchorus olitorius HOM05D003982 ORTHO05D004831 2.8e-29 132.1 92 75.0
Duzib168G2133 Durio zibethinus HOM05D003982 ORTHO05D004831 2.8e-29 132.1 92 73.9
Sp6g21410 Schrenkiella parvula HOM05D003982 ORTHO05D004831 3.7e-29 131.7 78 82.1
Gohir.D03G130300 Gossypium hirsutum HOM05D003982 ORTHO05D004831 6.3e-29 131.0 83 78.3
Gorai.003G137000 Gossypium raimondii HOM05D003982 ORTHO05D004831 6.3e-29 131.0 83 78.3
GSVIVG01025043001 Vitis vinifera HOM05D003982 ORTHO05D004831 8.2e-29 130.6 86 74.4
PSO339G1754 Papaver somniferum HOM05D003982 ORTHO05D004831 1.1e-28 130.2 82 78.0
CARHR273320 Cardamine hirsuta HOM05D003982 ORTHO05D004831 1.4e-28 129.8 78 80.8
ClCG02G020490 Citrullus lanatus HOM05D003982 ORTHO05D004831 1.4e-28 129.8 73 82.2
MELO3C013673.2 Cucumis melo HOM05D003982 ORTHO05D004831 1.4e-28 129.8 73 82.2
CsaV3_6G022130 Cucumis sativus L. HOM05D003982 ORTHO05D004831 1.4e-28 129.8 73 82.2
AT3G46180 Arabidopsis thaliana HOM05D003982 ORTHO05D004831 1.8e-28 129.4 91 72.5
A02p06910 Brassica napus HOM05D003982 ORTHO05D004831 1.8e-28 129.4 78 80.8
C03p13320 Brassica napus HOM05D003982 ORTHO05D004831 1.8e-28 129.4 73 83.6
BolC3t13794H Brassica oleracea HOM05D003982 ORTHO05D004831 1.8e-28 129.4 73 83.6
BraA02t05770Z Brassica rapa HOM05D003982 ORTHO05D004831 1.8e-28 129.4 83 77.1
Hund05010 Selenicereus undatus HOM05D003982 ORTHO05D004831 1.8e-28 129.4 84 78.6
TAR636G3601 Trochodendron aralioides HOM05D003982 ORTHO05D004831 1.8e-28 129.4 78 82.1
BolC2t07323H Brassica oleracea HOM05D003982 ORTHO05D004831 2.4e-28 129.0 87 73.6
TAR633G2721 Trochodendron aralioides HOM05D003982 ORTHO05D004831 2.4e-28 129.0 78 82.1
C02p12210 Brassica napus HOM05D003982 ORTHO05D004831 3.1e-28 128.6 87 73.6
PSO206G0007 Papaver somniferum HOM05D003982 ORTHO05D004831 3.1e-28 128.6 75 82.7
Prupe.6G085700 Prunus persica HOM05D003982 ORTHO05D004831 3.1e-28 128.6 82 74.4
BcaB05g22537 Brassica carinata HOM05D003982 ORTHO05D004831 4.1e-28 128.3 87 73.6
Thhalv10002597m.g Eutrema salsugineum HOM05D003982 ORTHO05D004831 4.1e-28 128.3 91 71.4
A03p11500 Brassica napus HOM05D003982 ORTHO05D004831 5.3e-28 127.9 73 82.2
BraA03t10464Z Brassica rapa HOM05D003982 ORTHO05D004831 5.3e-28 127.9 73 82.2
TWI79G0386 Tripterygium wilfordii HOM05D003982 ORTHO05D004831 5.3e-28 127.9 73 83.6
Actinidia03777 Actinidia chinensis HOM05D003982 ORTHO05D004831 7.0e-28 127.5 92 73.9
Carub.0005s1200 Capsella rubella HOM05D003982 ORTHO05D004831 7.0e-28 127.5 91 70.3
Cfa011440 Carpinus fangiana HOM05D003982 ORTHO05D004831 7.0e-28 127.5 92 72.8
Eucgr.J02078 Eucalyptus grandis HOM05D003982 ORTHO05D004831 7.0e-28 127.5 91 73.6
Lj3g0020703 Lotus japonicus HOM05D003982 ORTHO05D004831 7.0e-28 127.5 97 69.1
EL10Ac7g15957 Beta vulgaris HOM05D003982 ORTHO05D004831 9.1e-28 127.1 82 79.3
Thhalv10014012m.g Eutrema salsugineum HOM05D003982 ORTHO05D004831 9.1e-28 127.1 87 73.6
Cpa.g.sc252.18 Carica papaya HOM05D003982 ORTHO05D004831 1.2e-27 126.7 92 75.0
MD11G1114800 Malus domestica HOM05D003982 ORTHO05D004831 1.2e-27 126.7 73 82.2
Haze_24023 Corylus avellana HOM05D003982 ORTHO05D004831 1.6e-27 126.3 92 72.8
Sed0000090 Sechium edule HOM05D003982 ORTHO05D004831 1.6e-27 126.3 80 80.0
Aqoxy4G03037 Aquilegia oxysepala HOM05D003982 ORTHO05D004831 2.0e-27 125.9 73 82.2
A10p16970 Brassica napus HOM05D003982 ORTHO05D004831 2.0e-27 125.9 73 80.8
Dinv32845 Davidia involucrata HOM05D002619 ORTHO05D002804 2.0e-27 125.9 83 77.1
CANSAT54G2978 Cannabis sativa HOM05D003982 ORTHO05D004831 3.5e-27 125.2 85 75.3
Lalb_Chr22g0350001 Lupinus albus HOM05D003982 ORTHO05D004831 3.5e-27 125.2 92 70.7
Rhsim13G0087500 Rhododendron simsii HOM05D003982 ORTHO05D004831 3.5e-27 125.2 73 80.8
TWI31G0176 Tripterygium wilfordii HOM05D003982 ORTHO05D004831 3.5e-27 125.2 73 80.8
AL5G24910 Arabidopsis lyrata HOM05D003982 ORTHO05D004831 4.5e-27 124.8 91 69.2
BcaC01g06551 Brassica carinata HOM05D003982 ORTHO05D004831 4.5e-27 124.8 73 82.2
Gohir.A05G098200 Gossypium hirsutum HOM05D003982 ORTHO05D004831 4.5e-27 124.8 73 83.6
MD03G1100700 Malus domestica HOM05D003982 ORTHO05D004831 5.9e-27 124.4 73 80.8
Aa31LG4G15290 Aethionema arabicum HOM05D003982 ORTHO05D004831 7.7e-27 124.0 83 75.9
BcaC04g19625 Brassica carinata HOM05D003982 ORTHO05D004831 7.7e-27 124.0 88 68.2
C09p52220 Brassica napus HOM05D003982 ORTHO05D004831 7.7e-27 124.0 88 68.2
BolC9t58089H Brassica oleracea HOM05D003982 ORTHO05D004831 7.7e-27 124.0 88 68.2
BraA10t43781Z Brassica rapa HOM05D003982 ORTHO05D004831 7.7e-27 124.0 88 68.2
CiPaw.13G100100 Carya illinoinensis HOM05D003982 ORTHO05D004831 7.7e-27 124.0 91 70.3
FvH4_3g34850 Fragaria vesca HOM05D003982 ORTHO05D004831 7.7e-27 124.0 91 68.1
VMungo1127G2086 Vigna mungo HOM05D003982 ORTHO05D004831 1.0e-26 123.6 89 73.0
Gohir.D05G098300 Gossypium hirsutum HOM05D003982 ORTHO05D004831 1.3e-26 123.2 73 82.2
Gorai.009G101900 Gossypium raimondii HOM05D003982 ORTHO05D004831 1.3e-26 123.2 73 82.2
Sabra16G0141000 Salix brachista HOM05D003982 ORTHO05D004831 1.3e-26 123.2 73 79.5
CiPaw.14G072900 Carya illinoinensis HOM05D003982 ORTHO05D004831 1.7e-26 122.9 92 72.8
FAN25G3842 Fragaria x ananassa HOM05D003982 ORTHO05D004831 1.7e-26 122.9 91 67.0
FAN11G3073 Fragaria x ananassa HOM05D003982 ORTHO05D004831 2.2e-26 122.5 91 67.0
THA.LOC104810797 Tarenaya hassleriana HOM05D003982 ORTHO05D004831 2.2e-26 122.5 92 71.7
Ah.08g214870 Amaranthus hybridus HOM05D003982 ORTHO05D004831 2.9e-26 122.1 85 70.6
DCAR_006010 Daucus carota HOM05D003982 ORTHO05D004831 2.9e-26 122.1 72 80.6
FAN16G2231 Fragaria x ananassa HOM05D003982 ORTHO05D004831 2.9e-26 122.1 91 67.0
FAN21G4048 Fragaria x ananassa HOM05D003982 ORTHO05D004831 2.9e-26 122.1 73 78.1
Sp5g15450 Schrenkiella parvula HOM05D003982 ORTHO05D004831 2.9e-26 122.1 73 76.7
THA.LOC104799459 Tarenaya hassleriana HOM05D003982 ORTHO05D004831 2.9e-26 122.1 78 78.2
Potri.001G234800 Populus trichocarpa HOM05D003982 ORTHO05D004831 3.8e-26 121.7 78 75.6
CAN.G241.39 Capsicum annuum HOM05D003982 ORTHO05D004831 5.0e-26 121.3 78 79.5
Lj1A161T61 Lonicera japonica HOM05D003982 ORTHO05D004831 5.0e-26 121.3 69 84.1
Rhsim01G0224300 Rhododendron simsii HOM05D003982 ORTHO05D004831 5.0e-26 121.3 104 65.4
Cc01_g12230 Coffea canephora HOM05D003982 ORTHO05D004831 6.5e-26 120.9 91 69.2
EL10Ac4g08133 Beta vulgaris HOM05D003982 ORTHO05D004831 8.5e-26 120.6 84 71.4
HanXRQChr11g0340301 Helianthus annuus HOM05D003982 ORTHO05D004831 8.5e-26 120.6 84 75.0
Sc21g0005410 Simmondsia chinensis HOM05D003982 ORTHO05D004831 8.5e-26 120.6 91 67.0
RcHm_v2.0_Chr5g0062701 Rosa chinensis HOM05D003982 ORTHO05D004831 1.1e-25 120.2 73 75.3
PGR119G1985 Punica granatum HOM05D003982 ORTHO05D004831 1.5e-25 119.8 73 78.1
Lj2C1051T6 Lonicera japonica HOM05D003982 ORTHO05D004831 1.9e-25 119.4 72 79.2
Medtr4g063040 Medicago truncatula HOM05D003982 ORTHO05D004831 1.9e-25 119.4 73 79.5
Solyc06g005290.3 Solanum lycopersicum HOM05D003982 ORTHO05D004831 1.9e-25 119.4 92 71.7
Sopen06g001270 Solanum pennellii HOM05D003982 ORTHO05D004831 1.9e-25 119.4 92 71.7
Sopen11g030820 Solanum pennellii HOM05D003982 ORTHO05D004831 2.5e-25 119.0 72 81.9
PGSC0003DMG400010880 Solanum tuberosum HOM05D003982 ORTHO05D004831 2.5e-25 119.0 73 80.8
PGSC0003DMG400015563 Solanum tuberosum HOM05D003982 ORTHO05D004831 2.5e-25 119.0 72 81.9
CARHR154570 Cardamine hirsuta HOM05D003982 ORTHO05D004831 3.2e-25 118.6 91 63.7
Migut.N02659 Erythranthe guttata HOM05D003982 ORTHO05D004831 3.2e-25 118.6 91 69.2
AUR62014952 Chenopodium quinoa HOM05D003982 ORTHO05D004831 4.2e-25 118.2 84 71.4
AUR62035920 Chenopodium quinoa HOM05D003982 ORTHO05D004831 4.2e-25 118.2 84 70.2
DCAR_023863 Daucus carota HOM05D003982 ORTHO05D004831 5.5e-25 117.9 71 78.9
AUR62035919 Chenopodium quinoa HOM05D003982 ORTHO05D004831 9.4e-25 117.1 84 69.0
Lsat_1_v5_gn_5_166500 Lactuca sativa HOM05D003982 ORTHO05D004831 1.2e-24 116.7 90 68.9
AUR62029186 Chenopodium quinoa HOM05D003982 ORTHO05D004831 1.6e-24 116.3 84 70.2
ECA248G2684 Erigeron canadensis HOM05D003982 ORTHO05D004831 3.6e-24 115.2 72 77.8
HanXRQChr01g0009941 Helianthus annuus HOM05D003982 ORTHO05D004831 8.0e-24 114.0 72 77.8
unitig_744.g24621 Utricularia gibba HOM05D003982 ORTHO05D004831 8.0e-24 114.0 89 67.4
MSTRG.12630 Avicennia marina HOM05D003982 ORTHO05D004831 1.8e-23 112.8 89 66.3
Glyma.13G332500 Glycine max HOM05D003982 ORTHO05D004831 2.3e-23 112.5 95 67.4
Hma1.2p1_0846F.1_g227680 Hydrangea macrophylla HOM05D003982 ORTHO05D004831 5.2e-23 111.3 65 81.5
BcaB05g22572 Brassica carinata HOM05D003982 ORTHO05D004831 2.0e-22 109.4 74 74.3
SHI07539 Sapria himalayana HOM05D003982 ORTHO05D004831 2.0e-22 109.4 86 65.1
Zm00001eb266330 Zea mays HOM05D003982 ORTHO05D004831 3.3e-22 108.6 69 75.4
Zm00001eb355590 Zea mays HOM05D003982 ORTHO05D004831 4.4e-22 108.2 69 75.4
CAN.G820.8 Capsicum annuum HOM05D003982 ORTHO05D004831 5.7e-22 107.8 63 84.1
HPP92_021083 Vanilla planifolia HOM05D003982 ORTHO05D004831 5.7e-22 107.8 80 67.5
SGA_v2.0_scaffold39G15249 Striga asiatica HOM05D003982 ORTHO05D004831 7.5e-22 107.5 123 55.3
Os05g0115700 Oryza sativa ssp. japonica HOM05D003982 ORTHO05D004831 2.2e-21 105.9 69 75.4
Actinidia33854 Actinidia chinensis HOM05D003982 ORTHO05D004831 1.4e-20 103.2 66 75.8
MD05G1008500 Malus domestica HOM05D003982 ORTHO05D004831 5.3e-20 101.3 71 70.4
vmacro03118 Vaccinium macrocarpon HOM05D003982 ORTHO05D004831 7.0e-20 100.9 96 59.4
Nitab4.5_0010238g0010 Nicotiana tabacum HOM05D003982 ORTHO05D004831 1.2e-19 100.1 72 73.6
ATR0782G014 Amborella trichopoda HOM05D003982 ORTHO05D004831 1.6e-19 99.8 64 75.0
Phvul.L002043 Phaseolus vulgaris HOM05D003982 ORTHO05D004831 1.0e-18 97.1 51 88.2
vmacro14502 Vaccinium macrocarpon HOM05D003982 ORTHO05D004831 1.3e-18 96.7 54 83.3
Oeu058524.1 Olea europaea HOM05D003982 ORTHO05D004831 2.2e-18 95.9 133 48.9
QL01p033527 Quercus lobata HOM05D003982 ORTHO05D004831 1.1e-17 93.6 54 83.3
Glyma.12G066800 Glycine max HOM05D003982 ORTHO05D004831 1.6e-16 89.7 49 85.7
MBI05_g07846_MAGBIO Magnolia biondii HOM05D003982 ORTHO05D004831 2.1e-16 89.4 55 76.4
Mapoly0039s0069 Marchantia polymorpha HOM05D003982 ORTHO05D004831 2.1e-16 89.4 72 55.6
SalBow3G3142 Salvia bowleyana HOM05D003982 ORTHO05D004831 2.1e-16 89.4 54 79.6
Nitab4.5_0000070g0080 Nicotiana tabacum HOM05D003982 ORTHO05D004831 3.6e-16 88.6 52 82.7
CAN.G819.8 Capsicum annuum HOM05D003982 ORTHO05D004831 4.0e-15 85.1 53 77.4
Phvul.011G067700 Phaseolus vulgaris HOM05D003982 ORTHO05D004831 5.2e-15 84.7 49 79.6
SMO358G0604 Selaginella moellendorffii HOM05D003982 ORTHO05D004831 5.2e-15 84.7 64 59.4
Dinv26277 Davidia involucrata HOM05D003982 ORTHO05D004831 1.2e-14 83.6 70 61.4
Oeu040286.1 Olea europaea HOM05D003982 ORTHO05D004831 2.0e-14 82.8 49 81.6
Oeu041008.1 Olea europaea HOM05D003982 ORTHO05D004831 1.3e-13 80.1 49 75.5
Pp3c14_24680 Physcomitrium patens HOM05D003982 ORTHO05D004831 2.8e-13 79.0 73 52.1
AagrBONN_evm.TU.Sc2ySwM_228.2665 Anthoceros agrestis HOM05D003982 ORTHO05D004831 1.8e-12 76.3 72 51.4
PRCOL_00003646 Prasinoderma coloniale HOM05D003982 ORTHO05D004831 2.5e-09 65.9 71 50.7
Cre16.g676900 Chlamydomonas reinhardtii HOM05D003982 ORTHO05D004831 2.1e-08 62.8 69 44.9
Cre06.g260100 Chlamydomonas reinhardtii HOM05D003982 ORTHO05D004831 3.6e-08 62.0 72 48.6
MCO04G404 Micromonas commoda HOM05D003982 ORTHO05D004831 3.0e-07 58.9 90 38.9
CBR_g22484 Chara braunii HOM05D000019 ORTHO05D000048 6.8e-07 57.8 58 48.3


User provided reference genes

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