Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34281 Trifolium pratense HOM05D004332 ORTHO05D005116 1.3e-67 259.6 128 100.0
Psat5g286720 Pisum sativum HOM05D004332 ORTHO05D005116 1.0e-61 240.0 124 93.5
Medtr2g097270 Medicago truncatula HOM05D004332 ORTHO05D005116 9.6e-60 233.4 128 90.6
arahy.Tifrunner.gnm1.ann1.KAW7XL Arachis hypogaea HOM05D004332 ORTHO05D005116 5.3e-58 227.6 128 85.9
Glyma.11G138900 Glycine max HOM05D004332 ORTHO05D005116 3.4e-57 224.9 128 85.2
CANSAT54G0234 Cannabis sativa HOM05D004332 ORTHO05D005116 5.8e-57 224.2 128 83.6
Prupe.6G074300 Prunus persica HOM05D004332 ORTHO05D005116 7.6e-57 223.8 133 83.5
Glyma.12G062500 Glycine max HOM05D004332 ORTHO05D005116 2.9e-56 221.9 128 82.8
MD03G1090100 Malus domestica HOM05D004332 ORTHO05D005116 8.4e-56 220.3 132 81.1
Lalb_Chr19g0137881 Lupinus albus HOM05D004332 ORTHO05D005116 5.5e-55 217.6 128 81.2
Lj3g0024178 Lotus japonicus HOM05D004332 ORTHO05D005116 7.1e-55 217.2 128 83.6
MD11G1099700 Malus domestica HOM05D004332 ORTHO05D005116 7.1e-55 217.2 134 79.9
Manes.02G131400 Manihot esculenta HOM05D004332 ORTHO05D005116 7.1e-55 217.2 130 82.3
Phvul.011G063600 Phaseolus vulgaris HOM05D004332 ORTHO05D005116 7.1e-55 217.2 128 83.6
CiPaw.13G092600 Carya illinoinensis HOM05D004332 ORTHO05D005116 9.3e-55 216.9 128 80.5
VMungo1127G1024 Vigna mungo HOM05D004332 ORTHO05D005116 9.3e-55 216.9 128 83.6
CSS0035025 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 1.2e-54 216.5 131 80.9
Lalb_Chr03g0026581 Lupinus albus HOM05D004332 ORTHO05D005116 2.1e-54 215.7 128 80.5
CiPaw.14G067900 Carya illinoinensis HOM05D004332 ORTHO05D005116 2.7e-54 215.3 128 80.5
GSVIVG01024938001 Vitis vinifera HOM05D004332 ORTHO05D005116 4.6e-54 214.5 130 81.5
ClCG03G001410 Citrullus lanatus HOM05D004332 ORTHO05D005116 6.0e-54 214.2 128 79.7
SalBow2G0012 Salvia bowleyana HOM05D004332 ORTHO05D005116 6.0e-54 214.2 134 77.6
Manes.01G172400 Manihot esculenta HOM05D004332 ORTHO05D005116 7.9e-54 213.8 130 80.0
Migut.N00901 Erythranthe guttata HOM05D004332 ORTHO05D005116 1.0e-53 213.4 131 79.4
QL01p031517 Quercus lobata HOM05D004332 ORTHO05D005116 1.0e-53 213.4 128 80.5
FAN25G2250 Fragaria x ananassa HOM05D004332 ORTHO05D005116 1.8e-53 212.6 130 81.5
Dinv04179 Davidia involucrata HOM05D004332 ORTHO05D005116 2.3e-53 212.2 131 79.4
FvH4_3g36490 Fragaria vesca HOM05D004332 ORTHO05D005116 2.3e-53 212.2 130 81.5
FAN11G3576 Fragaria x ananassa HOM05D004332 ORTHO05D005116 2.3e-53 212.2 130 81.5
FAN16G1081 Fragaria x ananassa HOM05D004332 ORTHO05D005116 2.3e-53 212.2 130 80.8
Gorai.009G098500 Gossypium raimondii HOM05D004332 ORTHO05D005116 3.9e-53 211.5 130 78.5
TWI31G0816 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 3.9e-53 211.5 129 77.5
Rhsim01G0229500 Rhododendron simsii HOM05D004332 ORTHO05D005116 5.1e-53 211.1 129 80.6
Actinidia37195 Actinidia chinensis HOM05D004332 ORTHO05D005116 6.7e-53 210.7 128 80.5
Dinv17021 Davidia involucrata HOM05D004332 ORTHO05D005116 8.7e-53 210.3 131 77.9
Dinv42969 Davidia involucrata HOM05D004332 ORTHO05D005116 8.7e-53 210.3 131 77.9
Dinv43130 Davidia involucrata HOM05D004332 ORTHO05D005116 8.7e-53 210.3 131 77.9
MBI05_g28381_MAGBIO Magnolia biondii HOM05D004332 ORTHO05D005116 8.7e-53 210.3 129 79.1
RcHm_v2.0_Chr5g0065351 Rosa chinensis HOM05D004332 ORTHO05D005116 8.7e-53 210.3 127 82.7
MELO3C020622.2 Cucumis melo HOM05D004332 ORTHO05D005116 1.1e-52 209.9 128 76.6
Actinidia34413 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.5e-52 209.5 131 78.6
COL.COLO4_18528 Corchorus olitorius HOM05D004332 ORTHO05D005116 1.5e-52 209.5 130 77.7
MELO3C025906.2 Cucumis melo HOM05D004332 ORTHO05D005116 1.5e-52 209.5 130 77.7
CsaV3_6G016760 Cucumis sativus L. HOM05D004332 ORTHO05D005116 1.9e-52 209.1 130 76.9
Sp6g21090 Schrenkiella parvula HOM05D004332 ORTHO05D005116 1.9e-52 209.1 128 77.3
TAR633G2148 Trochodendron aralioides HOM05D004332 ORTHO05D005116 1.9e-52 209.1 128 77.3
Cc01_g13020 Coffea canephora HOM05D004332 ORTHO05D005116 2.5e-52 208.8 129 80.6
SGA_v2.0_scaffold132G34538 Striga asiatica HOM05D004332 ORTHO05D005116 2.5e-52 208.8 131 77.1
Oeu064111.2 Olea europaea HOM05D004332 ORTHO05D005116 5.7e-52 207.6 129 75.2
Sed0019241 Sechium edule HOM05D004332 ORTHO05D005116 5.7e-52 207.6 128 75.8
Carub.0008s2008 Capsella rubella HOM05D004332 ORTHO05D005116 7.4e-52 207.2 132 77.3
Gohir.A05G094800 Gossypium hirsutum HOM05D004332 ORTHO05D005116 7.4e-52 207.2 130 76.9
Gohir.D05G095080 Gossypium hirsutum HOM05D004332 ORTHO05D005116 7.4e-52 207.2 130 76.9
Gohir.D05G095200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 7.4e-52 207.2 130 76.9
TWI75G0441 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 7.4e-52 207.2 129 76.0
Eucgr.J02045 Eucalyptus grandis HOM05D004332 ORTHO05D005116 9.6e-52 206.8 133 75.9
Hma1.2p1_0615F.1_g189860 Hydrangea macrophylla HOM05D004332 ORTHO05D005116 9.6e-52 206.8 128 76.6
ATR0559G209 Amborella trichopoda HOM05D004332 ORTHO05D005116 1.3e-51 206.5 129 78.3
AT5G59410 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 1.3e-51 206.5 131 77.1
CSS0027892 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 1.3e-51 206.5 133 77.4
arahy.Tifrunner.gnm1.ann1.TT4C38 Arachis hypogaea HOM05D004332 ORTHO05D005116 1.6e-51 206.1 125 82.4
HanXRQChr08g0237001 Helianthus annuus HOM05D004332 ORTHO05D005116 1.6e-51 206.1 129 79.8
Sed0025770 Sechium edule HOM05D004332 ORTHO05D005116 1.6e-51 206.1 128 75.0
unitig_6.g29275 Utricularia gibba HOM05D004332 ORTHO05D005116 1.6e-51 206.1 130 78.5
unitig_747.g21434 Utricularia gibba HOM05D004332 ORTHO05D005116 1.6e-51 206.1 130 78.5
CARHR285780 Cardamine hirsuta HOM05D004332 ORTHO05D005116 2.1e-51 205.7 132 77.3
Duzib150G0187 Durio zibethinus HOM05D004332 ORTHO05D005116 2.1e-51 205.7 128 77.3
Oeu017398.1 Olea europaea HOM05D004332 ORTHO05D005116 2.8e-51 205.3 132 76.5
Thecc.09G319900 Theobroma cacao HOM05D004332 ORTHO05D005116 2.8e-51 205.3 130 76.9
Gohir.A03G043200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 3.7e-51 204.9 130 76.2
Lsat_1_v5_gn_9_23661 Lactuca sativa HOM05D004332 ORTHO05D005116 3.7e-51 204.9 129 78.3
Potri.009G032100 Populus trichocarpa HOM05D004332 ORTHO05D005116 3.7e-51 204.9 134 77.6
Rhsim13G0081500 Rhododendron simsii HOM05D004332 ORTHO05D005116 3.7e-51 204.9 129 77.5
Sed0013921 Sechium edule HOM05D004332 ORTHO05D005116 3.7e-51 204.9 130 76.2
AL8G35880 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 4.8e-51 204.5 131 77.9
arahy.Tifrunner.gnm1.ann1.WMUR0J Arachis hypogaea HOM05D004332 ORTHO05D005116 4.8e-51 204.5 115 84.3
Ciclev10029562m.g Citrus clementina HOM05D004332 ORTHO05D005116 6.2e-51 204.1 134 74.6
CsaV3_1G034360 Cucumis sativus L. HOM05D004332 ORTHO05D005116 6.2e-51 204.1 128 76.6
Thhalv10015001m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 6.2e-51 204.1 132 76.5
ClCG02G020050 Citrullus lanatus HOM05D004332 ORTHO05D005116 1.1e-50 203.4 129 76.0
arahy.Tifrunner.gnm1.ann1.A22IES Arachis hypogaea HOM05D004332 ORTHO05D005116 1.8e-50 202.6 125 80.8
AUR62009559 Chenopodium quinoa HOM05D004332 ORTHO05D005116 1.8e-50 202.6 128 75.0
Gohir.D03G124100 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.8e-50 202.6 130 74.6
Nn2g11136 Nelumbo nucifera HOM05D004332 ORTHO05D005116 1.8e-50 202.6 129 77.5
Duzib168G2052 Durio zibethinus HOM05D004332 ORTHO05D005116 2.4e-50 202.2 130 75.4
Potri.001G241500 Populus trichocarpa HOM05D004332 ORTHO05D005116 2.4e-50 202.2 133 76.7
CARHR122250 Cardamine hirsuta HOM05D004332 ORTHO05D005116 3.1e-50 201.8 133 73.7
Thhalv10017410m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 3.1e-50 201.8 133 72.9
Oeu002423.1 Olea europaea HOM05D004332 ORTHO05D005116 4.1e-50 201.4 131 74.8
THA.LOC104826319 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 4.1e-50 201.4 133 73.7
THA.LOC104814879 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 5.3e-50 201.1 129 75.2
Hund04945 Selenicereus undatus HOM05D004332 ORTHO05D005116 6.9e-50 200.7 128 75.8
Gorai.003G130800 Gossypium raimondii HOM05D004332 ORTHO05D005116 1.5e-49 199.5 131 74.0
BraA04t17767Z Brassica rapa HOM05D004332 ORTHO05D005116 2.6e-49 198.7 133 72.2
AUR62001771 Chenopodium quinoa HOM05D004332 ORTHO05D005116 2.6e-49 198.7 128 73.4
A04p21990 Brassica napus HOM05D004332 ORTHO05D005116 3.4e-49 198.4 133 71.4
Gohir.A07G099000 Gossypium hirsutum HOM05D004332 ORTHO05D005116 3.4e-49 198.4 130 75.4
Aa31sc23G410 Aethionema arabicum HOM05D004332 ORTHO05D005116 5.8e-49 197.6 132 75.0
Aa31LG5G7210 Aethionema arabicum HOM05D004332 ORTHO05D005116 7.6e-49 197.2 133 71.4
BcaB06g28270 Brassica carinata HOM05D004332 ORTHO05D005116 1.7e-48 196.1 133 70.7
BcaC02g08120 Brassica carinata HOM05D004332 ORTHO05D005116 1.7e-48 196.1 133 69.9
C04p58150 Brassica napus HOM05D004332 ORTHO05D005116 1.7e-48 196.1 133 69.9
PGR102G2585 Punica granatum HOM05D004332 ORTHO05D005116 1.7e-48 196.1 130 76.2
Gohir.D07G103500 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.2e-48 195.7 128 74.2
Sc12g0001450 Simmondsia chinensis HOM05D004332 ORTHO05D005116 2.2e-48 195.7 128 72.7
BolC4t27343H Brassica oleracea HOM05D004332 ORTHO05D005116 2.9e-48 195.3 133 69.9
THA.LOC104800671 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 2.9e-48 195.3 132 72.0
Sabra16G0146000 Salix brachista HOM05D004332 ORTHO05D005116 3.8e-48 194.9 145 71.0
Nitab4.5_0000463g0140 Nicotiana tabacum HOM05D004332 ORTHO05D005116 5.0e-48 194.5 130 74.6
Nitab4.5_0001326g0120 Nicotiana tabacum HOM05D004332 ORTHO05D005116 6.5e-48 194.1 130 74.6
Carub.0004s1001 Capsella rubella HOM05D004332 ORTHO05D005116 8.4e-48 193.7 133 69.9
Sp4g11830 Schrenkiella parvula HOM05D004332 ORTHO05D005116 8.4e-48 193.7 133 69.9
PSO151G0214 Papaver somniferum HOM05D004332 ORTHO05D005116 1.1e-47 193.4 128 72.7
AL146U10030 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 1.4e-47 193.0 133 70.7
THA.LOC104810775 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 1.4e-47 193.0 129 73.6
Ah.08g219640 Amaranthus hybridus HOM05D004332 ORTHO05D005116 1.9e-47 192.6 128 71.1
PSO339G1935 Papaver somniferum HOM05D004332 ORTHO05D005116 1.9e-47 192.6 128 72.7
BcaB02g10224 Brassica carinata HOM05D004332 ORTHO05D005116 2.5e-47 192.2 134 68.7
SEGI_11468 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 2.5e-47 192.2 124 75.0
EL10Ac7g16034 Beta vulgaris HOM05D004332 ORTHO05D005116 4.2e-47 191.4 128 69.5
BcaC02g11036 Brassica carinata HOM05D004332 ORTHO05D005116 4.2e-47 191.4 134 67.9
A07p19440 Brassica napus HOM05D004332 ORTHO05D005116 4.2e-47 191.4 134 67.9
C04p21940 Brassica napus HOM05D004332 ORTHO05D005116 4.2e-47 191.4 134 67.9
BolC4t23714H Brassica oleracea HOM05D004332 ORTHO05D005116 4.2e-47 191.4 134 67.9
ECA247G3838 Erigeron canadensis HOM05D004332 ORTHO05D005116 4.2e-47 191.4 127 72.4
Sc21g0005870 Simmondsia chinensis HOM05D004332 ORTHO05D005116 4.2e-47 191.4 128 73.4
BraA07t29650Z Brassica rapa HOM05D004332 ORTHO05D005116 7.1e-47 190.7 134 67.2
PGSC0003DMG400030417 Solanum tuberosum HOM05D004332 ORTHO05D005116 1.2e-46 189.9 127 71.7
AT2G29020 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 2.1e-46 189.1 134 67.9
Solyc06g076260.3 Solanum lycopersicum HOM05D004332 ORTHO05D005116 2.7e-46 188.7 115 77.4
vmacro14542 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 2.7e-46 188.7 118 76.3
CDE04G0625 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 6.1e-46 187.6 128 69.5
CAN.G394.64 Capsicum annuum HOM05D004332 ORTHO05D005116 1.3e-45 186.4 127 71.7
Aqoxy1G00923 Aquilegia oxysepala HOM05D004332 ORTHO05D005116 1.8e-45 186.0 129 71.3
Sabra09G0022800 Salix brachista HOM05D004332 ORTHO05D005116 1.8e-45 186.0 121 77.7
Gorai.001G111400 Gossypium raimondii HOM05D004332 ORTHO05D005116 3.9e-45 184.9 121 73.6
TAR636G3330 Trochodendron aralioides HOM05D004332 ORTHO05D005116 8.7e-45 183.7 115 77.4
CDE07G0755 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 1.1e-44 183.3 128 67.2
Atru.chr3.3947 Acer truncatum HOM05D004332 ORTHO05D005116 1.3e-43 179.9 136 70.6
DCAR_018915 Daucus carota HOM05D004332 ORTHO05D005116 8.2e-43 177.2 117 69.2
HanXRQChr07g0197291 Helianthus annuus HOM05D004332 ORTHO05D005116 1.1e-42 176.8 137 67.2
Lsat_1_v5_gn_8_73521 Lactuca sativa HOM05D004332 ORTHO05D005116 1.2e-41 173.3 120 69.2
Mapoly0045s0062 Marchantia polymorpha HOM05D004332 ORTHO05D005116 1.2e-41 173.3 117 67.5
Zm00001eb266910 Zea mays HOM05D004332 ORTHO05D005116 8.5e-40 167.2 131 64.9
Os05g0110600 Oryza sativa ssp. japonica HOM05D004332 ORTHO05D005116 1.9e-39 166.0 128 60.9
SMO304G0081 Selaginella moellendorffii HOM05D004332 ORTHO05D005116 6.7e-37 157.5 130 57.7
Pp3c16_16760 Physcomitrium patens HOM05D004332 ORTHO05D005116 1.3e-35 153.3 115 65.2
Nn2g13368 Nelumbo nucifera HOM05D004332 ORTHO05D005116 1.1e-34 150.2 91 80.2
AagrBONN_evm.TU.Sc2ySwM_228.3328 Anthoceros agrestis HOM05D004332 ORTHO05D005116 2.6e-33 145.6 103 67.0
Pp3c6_17300 Physcomitrium patens HOM05D004332 ORTHO05D005116 7.9e-30 134.0 113 55.8
Sopen06g032690 Solanum pennellii HOM05D004332 ORTHO05D005116 1.3e-27 126.7 78 76.9
Haze_24115 Corylus avellana HOM05D004332 ORTHO05D005116 2.2e-27 125.9 74 78.4
Actinidia07026 Actinidia chinensis HOM05D004332 ORTHO05D005116 2.6e-25 119.0 85 72.9
FAN21G1178 Fragaria x ananassa HOM05D004332 ORTHO05D005116 7.7e-25 117.5 74 78.4
vmacro03061 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 3.8e-24 115.2 72 73.6
AL4G23580 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 1.6e-22 109.8 77 68.8
TAR369G0503 Trochodendron aralioides HOM05D004332 ORTHO05D005116 5.2e-21 104.8 73 67.1
SEGI_12680 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 1.1e-20 103.6 71 67.6
Actinidia23932 Actinidia chinensis HOM05D004332 ORTHO05D005116 3.7e-19 98.6 60 80.0
Peaxi162Scf00774g00129 Petunia axillaris HOM05D004332 ORTHO05D005116 7.0e-18 94.4 56 80.4
HPP92_028206 Vanilla planifolia HOM05D004332 ORTHO05D005116 5.2e-13 78.2 60 65.0
SHI47893 Sapria himalayana HOM05D004332 ORTHO05D005116 5.7e-12 74.7 50 66.0
Cre08.g376000 Chlamydomonas reinhardtii HOM05D004332 ORTHO05D005116 8.3e-11 70.9 95 32.6
Eucgr.H02119 Eucalyptus grandis HOM05D004332 ORTHO05D005116 4.7e-06 55.1 69 47.8


User provided reference genes

Program Settings