Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 2.7e-169 598.6 303 100.0
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 3.8e-147 525.0 293 89.8
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 5.7e-135 484.6 273 88.3
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 2.0e-116 422.9 267 78.7
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 2.0e-111 406.4 299 67.6
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 4.4e-111 405.2 264 76.5
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 4.4e-111 405.2 291 75.6
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 2.4e-109 399.4 299 66.6
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 1.0e-107 394.0 266 74.1
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 2.2e-107 392.9 269 71.0
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 1.1e-106 390.6 275 70.2
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 1.9e-106 389.8 274 71.9
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 2.1e-105 386.3 254 73.6
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 1.2e-103 380.6 266 72.6
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 1.7e-102 376.7 271 69.4
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 1.2e-100 370.5 275 66.5
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 2.0e-100 369.8 298 62.8
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 3.5e-100 369.0 293 65.5
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 4.5e-100 368.6 280 65.4
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 5.9e-100 368.2 266 68.0
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 7.7e-100 367.9 293 64.8
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 1.0e-99 367.5 267 67.8
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 3.8e-99 365.5 298 63.1
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 1.1e-98 364.0 273 64.1
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.9e-98 363.2 273 64.1
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 9.5e-98 360.9 257 68.9
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 1.6e-97 360.1 245 67.8
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 6.1e-97 358.2 280 65.7
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 1.4e-96 357.1 293 64.2
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 1.8e-96 356.7 248 71.4
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 1.8e-96 356.7 288 62.8
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 2.3e-96 356.3 248 71.4
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 2.3e-96 356.3 287 63.4
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 3.0e-96 355.9 293 63.1
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 6.8e-96 354.8 262 65.6
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 2.6e-95 352.8 260 66.2
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 4.4e-95 352.1 310 57.1
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 9.8e-95 350.9 260 65.8
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 8.3e-94 347.8 260 65.4
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 2.4e-93 346.3 282 63.1
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 2.4e-93 346.3 237 70.5
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 1.6e-92 343.6 271 62.0
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 3.5e-92 342.4 277 61.7
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 4.5e-92 342.0 253 64.4
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 7.8e-92 341.3 285 58.6
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 2.3e-91 339.7 275 60.7
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 2.3e-91 339.7 279 59.1
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 2.9e-91 339.3 272 61.4
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 2.9e-91 339.3 213 74.6
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 3.8e-91 339.0 267 62.5
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 8.6e-91 337.8 314 55.7
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 1.1e-90 337.4 289 57.1
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 1.1e-90 337.4 277 61.0
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 1.9e-90 336.7 279 62.0
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 7.3e-90 334.7 277 60.6
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 7.3e-90 334.7 277 60.6
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 2.1e-89 333.2 285 58.9
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 2.1e-89 333.2 239 64.4
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 4.0e-88 328.9 359 50.1
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 4.0e-88 328.9 237 65.0
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 5.2e-88 328.6 282 58.2
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 5.2e-88 328.6 277 59.9
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 8.9e-88 327.8 282 58.2
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 5.7e-87 325.1 278 61.2
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 1.3e-86 323.9 288 56.9
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 3.7e-86 322.4 302 56.0
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 8.3e-86 321.2 268 59.3
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 8.3e-86 321.2 268 59.3
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 8.3e-86 321.2 268 59.3
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 8.3e-86 321.2 285 57.2
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 1.1e-85 320.9 282 55.3
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 1.8e-85 320.1 236 63.1
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 2.4e-85 319.7 285 56.8
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 3.2e-85 319.3 272 58.5
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 5.4e-85 318.5 261 60.2
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 1.2e-84 317.4 238 63.4
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 2.0e-84 316.6 277 57.4
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 2.0e-84 316.6 321 53.6
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 4.6e-84 315.5 233 63.9
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 1.0e-83 314.3 268 59.0
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 2.3e-83 313.2 257 61.1
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 1.5e-82 310.5 278 57.9
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 3.3e-82 309.3 274 58.4
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 8.0e-81 304.7 211 65.4
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.4e-80 303.9 208 71.6
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 1.4e-80 303.9 321 52.3
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 1.8e-80 303.5 296 55.1
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 3.7e-78 295.8 262 56.9
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 1.4e-77 293.9 236 64.4
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 1.2e-76 290.8 257 58.4
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 4.6e-76 288.9 292 51.0
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 1.7e-75 287.0 221 67.4
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 1.1e-74 284.3 302 50.7
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 1.5e-74 283.9 219 66.7
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 7.3e-74 281.6 274 54.4
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 7.3e-74 281.6 261 54.4
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 1.6e-73 280.4 277 53.8
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 1.6e-73 280.4 270 54.4
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 8.9e-72 274.6 274 55.5
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 8.9e-72 274.6 274 55.5
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 8.9e-72 274.6 274 55.5
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 8.9e-72 274.6 266 51.9
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 1.2e-71 274.2 237 55.7
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 5.6e-66 255.4 197 65.5
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 1.2e-65 254.2 235 49.8
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 2.6e-63 246.5 220 55.9
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 8.4e-62 241.5 231 55.4
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 1.4e-61 240.7 212 55.2
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 3.9e-59 232.6 438 35.8
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 5.6e-58 228.8 233 49.8
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 1.4e-56 224.2 243 45.3
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 5.1e-51 205.7 240 44.2
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 1.5e-47 194.1 173 56.6
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 2.9e-46 189.9 161 57.1
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 1.1e-45 188.0 166 55.4
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 2.1e-41 173.7 135 63.0
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 6.9e-40 168.7 145 56.6
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 1.5e-39 167.5 161 49.1
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 4.9e-38 162.5 117 63.2
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 5.1e-35 152.5 236 37.7
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 2.8e-33 146.7 130 60.0
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 2.8e-33 146.7 106 67.9
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 1.2e-31 141.4 109 67.0
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 1.1e-29 134.8 101 66.3
Nn2g13370 Nelumbo nucifera HOM05D005444 ORTHO05D006773 2.5e-29 133.7 85 67.1
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 7.9e-28 128.6 74 75.7
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 1.5e-26 124.4 145 46.2
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 4.1e-24 116.3 67 79.1
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 5.9e-23 112.5 115 49.6
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 1.3e-22 111.3 78 65.4
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 1.7e-22 110.9 74 68.9
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 2.2e-22 110.5 74 68.9
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 2.2e-22 110.5 74 68.9
Glyma.11G138967 Glycine max HOM05D005444 ORTHO05D006773 5.7e-18 95.9 74 64.9
TPR.G27777 Trifolium pratense HOM05D005444 ORTHO05D006773 2.8e-17 93.6 65 69.2
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 3.7e-17 93.2 73 67.1
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 3.8e-14 83.2 41 87.8
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 8.5e-14 82.0 42 88.1
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 1.2e-12 78.2 44 75.0
TAR636G2897 Trochodendron aralioides HOM05D005444 ORTHO05D006773 2.7e-12 77.0 80 52.5
COL.COLO4_35627 Corchorus olitorius HOM05D005444 ORTHO05D001950 3.6e-12 76.6 105 43.8
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 6.1e-12 75.9 55 65.5
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.5e-10 71.2 187 29.4
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 4.4e-10 69.7 111 43.2
Phvul.005G077000 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 3.1e-08 63.5 36 72.2
C03p13750 Brassica napus HOM05D005444 ORTHO05D042479 2.0e-07 60.8 38 68.4
BolC3t13825H Brassica oleracea HOM05D005444 ORTHO05D042479 2.0e-07 60.8 38 68.4
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 2.0e-07 60.8 210 26.2


User provided reference genes

Program Settings