Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34239 Trifolium pratense HOM05D004203 ORTHO05D004830 3.2e-178 628.2 305 100.0
Medtr0365s0010 Medicago truncatula HOM05D004203 ORTHO05D004830 4.5e-164 581.3 308 91.9
Psat6g100840 Pisum sativum HOM05D004203 ORTHO05D004830 4.8e-158 561.2 312 87.8
Ca_12360_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 5.9e-148 527.7 305 82.6
Ca_12363_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 5.9e-148 527.7 305 82.6
VMungo0900G0001 Vigna mungo HOM05D004203 ORTHO05D004830 6.1e-137 491.1 305 77.7
Lalb_Chr17g0337651 Lupinus albus HOM05D004203 ORTHO05D004830 1.0e-136 490.3 307 77.5
Phvul.003G000800 Phaseolus vulgaris HOM05D004203 ORTHO05D004830 2.0e-135 486.1 305 74.8
Glyma.09G285700 Glycine max HOM05D004203 ORTHO05D004830 8.2e-134 480.7 311 75.9
Potri.007G001200 Populus trichocarpa HOM05D004203 ORTHO05D004830 1.1e-133 480.3 308 75.6
Sabra07G0000900 Salix brachista HOM05D004203 ORTHO05D004830 3.8e-131 471.9 306 73.2
CiPaw.15G000900 Carya illinoinensis HOM05D004203 ORTHO05D004830 2.5e-130 469.2 307 73.6
COL.COLO4_33135 Corchorus olitorius HOM05D004203 ORTHO05D004830 3.2e-130 468.8 308 72.7
Duzib248G1608 Durio zibethinus HOM05D004203 ORTHO05D004830 7.2e-130 467.6 308 73.7
Gohir.A13G062700 Gossypium hirsutum HOM05D004203 ORTHO05D004830 2.1e-129 466.1 308 73.4
Actinidia13679 Actinidia chinensis HOM05D004203 ORTHO05D004830 3.6e-129 465.3 309 70.9
Rhsim02G0210900 Rhododendron simsii HOM05D004203 ORTHO05D004830 3.6e-129 465.3 313 71.9
Gorai.013G067000 Gossypium raimondii HOM05D004203 ORTHO05D004830 8.0e-129 464.2 308 73.1
Thecc.02G153000 Theobroma cacao HOM05D004203 ORTHO05D004830 8.0e-129 464.2 308 72.7
TAR623G0552 Trochodendron aralioides HOM05D004203 ORTHO05D004830 1.8e-128 463.0 308 71.4
QL01p000433 Quercus lobata HOM05D004203 ORTHO05D004830 5.2e-128 461.5 306 71.9
Gohir.D13G059200 Gossypium hirsutum HOM05D004203 ORTHO05D004830 6.8e-128 461.1 308 72.4
Lj2g0024262 Lotus japonicus HOM05D004203 ORTHO05D004830 6.8e-128 461.1 315 73.7
Atru.chr11.55 Acer truncatum HOM05D004203 ORTHO05D004830 1.5e-127 459.9 306 71.2
PSO063G7450 Papaver somniferum HOM05D004203 ORTHO05D004830 1.5e-127 459.9 308 70.8
TWI74G0727 Tripterygium wilfordii HOM05D004203 ORTHO05D004830 2.0e-127 459.5 307 70.4
Manes.04G161600 Manihot esculenta HOM05D004203 ORTHO05D004830 2.6e-127 459.1 308 70.5
PSO782G5227 Papaver somniferum HOM05D004203 ORTHO05D004830 4.4e-127 458.4 308 70.8
DCAR_026874 Daucus carota HOM05D004203 ORTHO05D004830 3.7e-126 455.3 310 70.6
Hma1.2p1_0513F.1_g169570 Hydrangea macrophylla HOM05D004203 ORTHO05D004830 3.7e-126 455.3 307 69.4
Cfa018675 Carpinus fangiana HOM05D004203 ORTHO05D004830 5.4e-125 451.4 305 70.8
Oeu027932.1 Olea europaea HOM05D004203 ORTHO05D004830 7.0e-125 451.1 309 69.6
Ciclev10015311m.g Citrus clementina HOM05D004203 ORTHO05D004830 1.6e-124 449.9 312 69.2
Aqoxy3G04325 Aquilegia oxysepala HOM05D004203 ORTHO05D004830 1.0e-123 447.2 315 68.6
CANSAT78G1232 Cannabis sativa HOM05D004203 ORTHO05D004830 1.7e-123 446.4 308 68.8
Cpa.g.sc257.7 Carica papaya HOM05D004203 ORTHO05D004830 2.2e-123 446.0 308 69.5
Haze_17403 Corylus avellana HOM05D004203 ORTHO05D004830 6.5e-123 444.5 308 68.8
THA.LOC104826512 Tarenaya hassleriana HOM05D004203 ORTHO05D004830 6.5e-123 444.5 305 69.2
Thhalv10020793m.g Eutrema salsugineum HOM05D004203 ORTHO05D004830 2.5e-122 442.6 310 71.3
Atru.chr11.58 Acer truncatum HOM05D004203 ORTHO05D004830 3.2e-122 442.2 298 70.5
Cc11_g04630 Coffea canephora HOM05D004203 ORTHO05D004830 4.2e-122 441.8 308 67.9
Aa31LG8G6770 Aethionema arabicum HOM05D004203 ORTHO05D004830 9.5e-122 440.7 310 69.4
CARHR095520 Cardamine hirsuta HOM05D004203 ORTHO05D004830 9.5e-122 440.7 310 70.3
BraA05t21796Z Brassica rapa HOM05D004203 ORTHO05D004830 1.2e-121 440.3 310 70.6
BcaB06g26068 Brassica carinata HOM05D004203 ORTHO05D004830 2.1e-121 439.5 310 70.3
A05p29130 Brassica napus HOM05D004203 ORTHO05D004830 4.7e-121 438.3 310 70.0
ClCG01G007960 Citrullus lanatus HOM05D004203 ORTHO05D004830 6.1e-121 438.0 305 68.9
AL3G33640 Arabidopsis lyrata HOM05D004203 ORTHO05D004830 1.0e-120 437.2 310 70.0
Sp3g18010 Schrenkiella parvula HOM05D004203 ORTHO05D004830 1.8e-120 436.4 310 69.7
AUR62032903 Chenopodium quinoa HOM05D004203 ORTHO05D004830 3.0e-120 435.6 309 68.0
CSS0042488 Camellia sinensis var. sinensis HOM05D004203 ORTHO05D004830 4.0e-120 435.3 309 67.6
Carub.0003s1989 Capsella rubella HOM05D004203 ORTHO05D004830 4.0e-120 435.3 310 69.7
Peaxi162Scf00603g00031 Petunia axillaris HOM05D004203 ORTHO05D004830 6.8e-120 434.5 309 68.3
AT3G19990 Arabidopsis thaliana HOM05D004203 ORTHO05D004830 1.2e-119 433.7 310 68.7
QL01p000540 Quercus lobata HOM05D004203 ORTHO05D004830 1.5e-119 433.3 307 68.4
Eucgr.G02607 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.0e-119 433.0 314 68.8
C01p44100 Brassica napus HOM05D004203 ORTHO05D004830 2.6e-119 432.6 311 69.1
Cc11_g04600 Coffea canephora HOM05D004203 ORTHO05D004830 3.4e-119 432.2 309 67.0
Sopen11g002260 Solanum pennellii HOM05D004203 ORTHO05D004830 4.4e-119 431.8 309 68.6
BcaC09g48955 Brassica carinata HOM05D004203 ORTHO05D004830 5.7e-119 431.4 311 68.8
BraA01t03555Z Brassica rapa HOM05D004203 ORTHO05D004830 5.7e-119 431.4 311 67.8
BcaB04g20673 Brassica carinata HOM05D004203 ORTHO05D004830 9.8e-119 430.6 311 69.1
BolC1t04373H Brassica oleracea HOM05D004203 ORTHO05D004830 9.8e-119 430.6 311 68.8
AUR62017749 Chenopodium quinoa HOM05D004203 ORTHO05D004830 3.7e-118 428.7 306 67.0
Lsat_1_v5_gn_4_27720 Lactuca sativa HOM05D004203 ORTHO05D004830 3.7e-118 428.7 310 66.5
MBI06_g12559_MAGBIO Magnolia biondii HOM05D004203 ORTHO05D004830 3.7e-118 428.7 305 68.2
EL10Ac9g23011 Beta vulgaris HOM05D004203 ORTHO05D004830 4.9e-118 428.3 306 66.3
Duzib132G1212 Durio zibethinus HOM05D004203 ORTHO05D004830 4.9e-118 428.3 308 64.9
Eucgr.L03404 Eucalyptus grandis HOM05D004203 ORTHO05D004830 4.9e-118 428.3 315 66.3
PGSC0003DMG400000979 Solanum tuberosum HOM05D004203 ORTHO05D004830 4.9e-118 428.3 309 67.3
Dinv37943 Davidia involucrata HOM05D004203 ORTHO05D004830 6.3e-118 427.9 313 68.4
BcaC05g28375 Brassica carinata HOM05D004203 ORTHO05D004830 1.1e-117 427.2 310 69.0
A01p34680 Brassica napus HOM05D004203 ORTHO05D004830 1.1e-117 427.2 311 67.2
BolC5t33177H Brassica oleracea HOM05D004203 ORTHO05D004830 1.1e-117 427.2 310 69.0
MD13G1001600 Malus domestica HOM05D004203 ORTHO05D004830 1.1e-117 427.2 325 64.6
Medtr0400s0020 Medicago truncatula HOM05D004203 ORTHO05D004830 1.4e-117 426.8 223 91.9
Eucgr.G02598 Eucalyptus grandis HOM05D004203 ORTHO05D004830 4.1e-117 425.2 315 66.0
CAN.G143.62 Capsicum annuum HOM05D004203 ORTHO05D004830 1.2e-116 423.7 309 66.3
Nitab4.5_0001018g0120 Nicotiana tabacum HOM05D004203 ORTHO05D004830 1.2e-116 423.7 307 67.4
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 4.5e-116 421.8 305 65.9
ECA234G3608 Erigeron canadensis HOM05D004203 ORTHO05D004830 5.9e-116 421.4 310 64.8
Nitab4.5_0001803g0070 Nicotiana tabacum HOM05D004203 ORTHO05D004830 1.3e-115 420.2 307 66.4
CsaV3_5G021930 Cucumis sativus L. HOM05D004203 ORTHO05D004830 2.3e-115 419.5 307 66.4
MELO3C005084.2 Cucumis melo HOM05D004203 ORTHO05D004830 6.6e-115 417.9 307 65.5
Prupe.1G350900 Prunus persica HOM05D004203 ORTHO05D004830 8.6e-115 417.5 335 63.6
PGR142G4147 Punica granatum HOM05D004203 ORTHO05D004830 1.2e-113 413.7 317 66.9
ClCG01G007980 Citrullus lanatus HOM05D004203 ORTHO05D004830 3.6e-113 412.1 305 64.3
FvH4_4g37300 Fragaria vesca HOM05D004203 ORTHO05D004830 1.4e-112 410.2 305 64.6
MD16G1004500 Malus domestica HOM05D004203 ORTHO05D004830 6.8e-112 407.9 317 63.4
RcHm_v2.0_Chr4g0447121 Rosa chinensis HOM05D004203 ORTHO05D004830 1.2e-111 407.1 305 63.0
Eucgr.G02596 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.6e-111 406.0 313 64.9
Lsat_1_v5_gn_3_35621 Lactuca sativa HOM05D004203 ORTHO05D004830 3.7e-110 402.1 309 63.4
FAN17G0196 Fragaria x ananassa HOM05D004203 ORTHO05D004830 4.9e-110 401.7 305 63.6
C05p44530 Brassica napus HOM05D004203 ORTHO05D004830 1.4e-109 400.2 293 68.9
Sed0024681 Sechium edule HOM05D004203 ORTHO05D004830 1.4e-109 400.2 305 63.6
Lsat_1_v5_gn_8_139521 Lactuca sativa HOM05D004203 ORTHO05D004830 3.2e-109 399.1 310 60.0
Thecc.02G152900 Theobroma cacao HOM05D004203 ORTHO05D004830 3.2e-109 399.1 296 63.9
HanXRQChr15g0472171 Helianthus annuus HOM05D004203 ORTHO05D004830 2.0e-108 396.4 312 62.2
Gohir.D13G059100 Gossypium hirsutum HOM05D004203 ORTHO05D004830 2.7e-108 396.0 305 61.6
Migut.O00611 Erythranthe guttata HOM05D004203 ORTHO05D004830 3.5e-108 395.6 306 63.1
Hund24393 Selenicereus undatus HOM05D004203 ORTHO05D004830 3.5e-108 395.6 314 62.1
Gorai.013G066900 Gossypium raimondii HOM05D004203 ORTHO05D004830 7.8e-108 394.4 305 61.3
QL01p000454 Quercus lobata HOM05D004203 ORTHO05D004830 1.3e-107 393.7 288 66.0
Migut.L00789 Erythranthe guttata HOM05D004203 ORTHO05D004830 1.5e-106 390.2 307 61.6
SalBow2G2162 Salvia bowleyana HOM05D004203 ORTHO05D004830 5.6e-106 388.3 306 61.4
Eucgr.G02594 Eucalyptus grandis HOM05D004203 ORTHO05D004830 7.3e-106 387.9 317 61.2
HPP92_005409 Vanilla planifolia HOM05D004203 ORTHO05D004830 7.3e-106 387.9 307 63.5
HPP92_022176 Vanilla planifolia HOM05D004203 ORTHO05D004830 1.2e-105 387.1 306 59.2
MSTRG.8095 Avicennia marina HOM05D004203 ORTHO05D004830 1.0e-104 384.0 312 61.9
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 8.9e-104 380.9 315 55.9
HanXRQChr17g0559591 Helianthus annuus HOM05D004203 ORTHO05D004830 1.5e-103 380.2 310 57.1
SHI10741 Sapria himalayana HOM05D004203 ORTHO05D004830 2.0e-103 379.8 291 62.2
HanXRQChr09g0251301 Helianthus annuus HOM05D004203 ORTHO05D004830 2.6e-103 379.4 310 56.1
Zm00001eb259360 Zea mays HOM05D004203 ORTHO05D004830 2.2e-102 376.3 307 58.6
ECA246G0515 Erigeron canadensis HOM05D004203 ORTHO05D004830 6.4e-102 374.8 311 61.1
Eucgr.G02595 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.1e-101 374.0 315 59.7
ATR0124G027 Amborella trichopoda HOM05D004203 ORTHO05D004830 2.4e-101 372.9 311 60.8
unitig_749.g13343 Utricularia gibba HOM05D004203 ORTHO05D004830 4.6e-100 368.6 306 59.8
ECA246G1911 Erigeron canadensis HOM05D004203 ORTHO05D004830 7.8e-100 367.9 313 60.4
Os02g0828200 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 1.0e-99 367.5 311 58.2
SEGI_02027 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 8.6e-99 364.4 345 53.3
SEGI_01054 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.2e-89 334.0 307 52.4
Os02g0828500 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 3.6e-89 332.4 307 53.4
Prupe.1G351100 Prunus persica HOM05D004203 ORTHO05D004830 1.7e-86 323.6 240 66.2
SEGI_32381 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.2e-81 307.4 290 52.1
AagrBONN_evm.TU.Sc2ySwM_368.1197 Anthoceros agrestis HOM05D004203 ORTHO05D004830 6.2e-81 305.1 331 48.3
SMO117G0084 Selaginella moellendorffii HOM05D004203 ORTHO05D004830 3.3e-74 282.7 308 49.0
Pp3c17_21640 Physcomitrium patens HOM05D004203 ORTHO05D004830 2.7e-68 263.1 312 44.6
GSVIVG01034366001 Vitis vinifera HOM05D004203 ORTHO05D004830 2.3e-67 260.0 279 50.9
Mapoly0080s0012 Marchantia polymorpha HOM05D004203 ORTHO05D004830 5.6e-66 255.4 309 41.1
Lj3C845T9 Lonicera japonica HOM05D004203 ORTHO05D004830 1.3e-54 217.6 140 73.6
Sc08g0004160 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.9e-53 213.8 159 65.4
GSVIVG01034368001 Vitis vinifera HOM05D004203 ORTHO05D004830 1.9e-53 213.8 305 43.6
Cre16.g671500 Chlamydomonas reinhardtii HOM05D004203 ORTHO05D004830 2.7e-52 209.9 311 38.3
Sc08g0004150 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.8e-51 207.2 135 70.4
SEGI_16211 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 9.7e-50 201.4 252 43.7
Sc08g0004170 Simmondsia chinensis HOM05D004203 ORTHO05D004830 8.2e-49 198.4 128 70.3
BcaB08g37041 Brassica carinata HOM05D004203 ORTHO05D004830 5.1e-43 179.1 139 64.0
Solyc11g006360.1 Solanum lycopersicum HOM05D004203 ORTHO05D004830 3.3e-42 176.4 114 70.2
Atru.chr11.61 Acer truncatum HOM05D004203 ORTHO05D004830 4.2e-37 159.5 127 65.4
BcaB06g27490 Brassica carinata HOM05D004203 ORTHO05D004830 8.2e-33 145.2 158 54.4
Atru.chr11.60 Acer truncatum HOM05D004203 ORTHO05D004830 1.4e-32 144.4 121 57.0
SEGI_00877 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 4.1e-32 142.9 189 45.0
Lj3A845T90 Lonicera japonica HOM05D004203 ORTHO05D004830 6.7e-27 125.6 141 48.9
BcaB06g26576 Brassica carinata HOM05D004203 ORTHO05D004830 1.7e-22 110.9 78 69.2
BcaC07g39871 Brassica carinata HOM05D004203 ORTHO05D004830 2.2e-22 110.5 79 65.8
Sc08g0004180 Simmondsia chinensis HOM05D004203 ORTHO05D004830 4.7e-20 102.8 75 65.3
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 6.1e-20 102.4 126 38.9
Sc08g0004140 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.0e-19 101.7 80 62.5
BcaB06g27488 Brassica carinata HOM05D004203 ORTHO05D004830 8.8e-19 98.6 99 56.6
BcaB08g37040 Brassica carinata HOM05D004203 ORTHO05D004830 1.5e-18 97.8 71 64.8
BcaB06g27492 Brassica carinata HOM05D004203 ORTHO05D004830 3.3e-18 96.7 92 58.7
Os03g0251425 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 1.3e-17 94.7 89 48.3
BcaB06g27495 Brassica carinata HOM05D004203 ORTHO05D004830 7.0e-16 89.0 60 70.0
FAN12G3670 Fragaria x ananassa HOM05D004203 ORTHO05D004830 1.2e-15 88.2 79 54.4
BcaB06g27494 Brassica carinata HOM05D004203 ORTHO05D004830 1.6e-12 77.8 67 59.7
GSVIVG01034364001 Vitis vinifera HOM05D004203 ORTHO05D004830 6.8e-11 72.4 63 57.1
BcaC07g38231 Brassica carinata HOM05D004203 ORTHO05D004830 3.7e-09 66.6 58 62.1
BcaB06g26577 Brassica carinata HOM05D004203 ORTHO05D004830 1.2e-07 61.6 55 58.2
A05p19690 Brassica napus HOM05D004203 ORTHO05D004830 8.6e-06 55.5 51 56.9


User provided reference genes

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