Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 0.0e+00 1149.8 594 100.0
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 3.1e-217 758.8 625 66.4
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 5.8e-200 701.4 593 63.6
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 3.5e-181 639.0 451 75.6
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 3.8e-175 619.0 655 55.0
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 5.1e-172 608.6 619 54.9
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 5.5e-166 588.6 617 53.3
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 1.6e-165 587.0 617 54.1
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 4.2e-158 562.4 587 53.3
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 6.1e-157 558.5 587 53.5
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 1.4e-150 537.3 586 51.5
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 4.5e-144 515.8 601 48.8
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 1.9e-142 510.4 591 49.2
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 5.5e-142 508.8 577 50.4
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 2.1e-133 480.3 769 40.6
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 4.4e-131 472.6 683 44.1
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 2.2e-127 460.3 571 47.5
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 6.1e-125 452.2 571 46.8
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 5.2e-124 449.1 580 46.4
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 1.1e-121 441.4 596 44.1
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 4.9e-114 416.0 633 40.8
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 1.6e-112 411.0 545 46.2
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 7.8e-112 408.7 648 40.3
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 6.6e-111 405.6 595 41.8
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 1.9e-110 404.1 614 40.9
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 5.6e-110 402.5 612 41.7
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 1.2e-109 401.4 634 39.0
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 3.0e-108 396.7 670 38.5
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 2.6e-107 393.7 665 37.3
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 2.9e-106 390.2 580 41.2
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 5.4e-105 386.0 662 36.9
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 7.0e-105 385.6 419 51.8
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 1.2e-104 384.8 582 41.4
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 2.7e-104 383.6 348 58.6
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 8.6e-103 378.6 335 56.1
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 1.8e-100 370.9 280 67.5
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 2.6e-99 367.1 590 38.6
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 9.8e-99 365.2 599 38.9
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 2.4e-97 360.5 598 38.1
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 3.5e-96 356.7 582 38.8
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 6.0e-96 355.9 592 37.0
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 5.0e-95 352.8 595 38.3
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.5e-94 350.5 593 37.1
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 7.3e-94 349.0 397 50.1
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 2.8e-93 347.1 599 38.7
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 5.2e-92 342.8 569 38.5
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 5.2e-92 342.8 622 35.7
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 1.2e-91 341.7 589 39.2
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.5e-91 341.3 320 53.4
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 5.8e-91 339.3 595 36.1
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 9.9e-91 338.6 598 38.3
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 8.3e-90 335.5 649 34.5
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 2.4e-89 334.0 601 39.1
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.2e-89 333.6 327 52.0
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 4.6e-88 329.7 597 36.0
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 1.3e-87 328.2 270 60.0
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 1.3e-87 328.2 366 50.0
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 3.0e-87 327.0 665 34.1
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 3.0e-87 327.0 594 35.7
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 5.1e-87 326.2 579 38.0
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 7.3e-86 322.4 610 35.6
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 4.7e-85 319.7 331 49.2
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.4e-84 318.2 310 52.3
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.8e-84 317.8 657 33.6
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 8.9e-84 315.5 582 37.6
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 1.5e-83 314.7 374 46.3
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 4.4e-83 313.2 711 32.8
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 9.9e-83 312.0 310 52.6
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 4.1e-81 306.6 313 52.1
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 1.1e-78 298.5 330 46.7
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 9.6e-78 295.4 288 51.7
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 9.6e-78 295.4 321 51.1
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 8.1e-77 292.4 693 32.5
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 1.4e-76 291.6 319 48.6
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 6.9e-76 289.3 616 33.4
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 9.0e-76 288.9 661 31.9
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 5.8e-75 286.2 375 46.1
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 4.6e-72 276.6 308 48.1
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 1.3e-69 268.5 306 48.7
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.1e-68 265.4 702 30.6
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 1.1e-68 265.4 606 31.4
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 6.9e-68 262.7 601 34.1
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 2.0e-67 261.2 320 43.1
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 2.6e-67 260.8 710 31.5
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.6e-67 260.8 225 56.4
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 1.7e-66 258.1 413 40.7
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 2.9e-66 257.3 360 41.1
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 2.4e-65 254.2 384 40.4
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 4.2e-65 253.4 681 30.2
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 4.2e-65 253.4 360 40.6
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 7.1e-65 252.7 586 32.8
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.1e-64 251.1 266 50.8
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 2.1e-64 251.1 563 32.9
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 2.1e-64 251.1 309 42.7
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 2.7e-64 250.8 596 32.4
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 6.0e-64 249.6 590 31.5
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 7.9e-64 249.2 372 40.6
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 7.9e-64 249.2 570 33.0
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 1.9e-62 244.6 308 45.1
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 4.3e-62 243.4 584 31.5
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 7.4e-62 242.7 301 43.9
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 6.2e-61 239.6 587 32.2
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 6.2e-61 239.6 594 31.6
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 8.1e-61 239.2 303 40.6
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 8.1e-61 239.2 457 34.1
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 1.4e-60 238.4 700 28.9
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 9.0e-60 235.7 606 32.8
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 1.5e-59 235.0 596 33.6
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 2.6e-59 234.2 602 32.9
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 3.4e-59 233.8 586 31.7
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 3.2e-57 227.3 598 31.8
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 7.1e-57 226.1 581 32.2
Glyma.12G052967 Glycine max HOM05D004076 ORTHO05D004606 2.1e-56 224.6 306 45.8
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 2.1e-56 224.6 234 50.0
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.3e-55 221.9 659 28.7
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 3.0e-55 220.7 312 40.1
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 3.1e-52 210.7 270 43.3
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 4.0e-52 210.3 275 42.5
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 2.9e-50 204.1 493 33.3
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 6.5e-50 203.0 307 40.7
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 2.5e-49 201.1 389 35.2
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 2.4e-44 184.5 309 38.2
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 1.2e-43 182.2 231 44.6
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.4e-41 175.3 188 50.0
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.4e-41 175.3 188 50.0
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 5.1e-39 166.8 484 29.8
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 7.4e-38 162.9 183 43.7
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 1.3e-34 152.1 225 40.9
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 5.5e-33 146.7 121 62.8
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 3.6e-32 144.1 239 36.0
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 1.5e-30 138.7 301 31.2
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.0e-23 115.9 142 47.2
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 2.6e-22 111.3 170 38.2
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 5.3e-20 103.6 124 41.9
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 4.7e-16 90.5 77 61.0
Haze_01516 Corylus avellana HOM05D004076 ORTHO05D004606 5.2e-15 87.0 262 32.1
arahy.Tifrunner.gnm1.ann1.S79H68 Arachis hypogaea HOM05D004076 ORTHO05D004606 1.3e-13 82.4 113 45.1
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 5.9e-11 73.6 80 45.0
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 3.2e-09 67.8 59 50.8
Medtr2g098740 Medicago truncatula HOM05D004076 ORTHO05D004606 2.7e-08 64.7 62 51.6
Medtr2g098780 Medicago truncatula HOM05D004076 ORTHO05D004606 4.0e-07 60.8 61 49.2
SEGI_13457 Sequoiadendron giganteum HOM05D035915 ORTHO05D004606 2.0e-06 58.5 91 36.3
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 7.5e-06 56.6 162 31.5
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 7.5e-06 56.6 67 40.3


User provided reference genes

Program Settings