Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34200 Trifolium pratense HOM05D006283 ORTHO05D007727 3.5e-160 568.2 274 100.0
Ca_20784_v3 Cicer arietinum L. HOM05D006283 ORTHO05D007727 3.1e-148 528.5 277 91.7
Medtr4g067140 Medicago truncatula HOM05D006283 ORTHO05D007727 8.4e-146 520.4 270 90.7
Glyma.11G127900 Glycine max HOM05D006283 ORTHO05D007727 2.4e-132 475.7 255 87.8
Lj3g0020373 Lotus japonicus HOM05D006283 ORTHO05D007727 6.5e-130 467.6 266 84.2
VMungo1127G0333 Vigna mungo HOM05D006283 ORTHO05D007727 1.0e-127 460.3 258 83.7
Phvul.011G054600 Phaseolus vulgaris HOM05D006283 ORTHO05D007727 2.2e-125 452.6 258 81.4
Lalb_Chr01g0003171 Lupinus albus HOM05D006283 ORTHO05D007727 2.6e-123 445.7 252 81.3
Lalb_Chr03g0026141 Lupinus albus HOM05D006283 ORTHO05D007727 2.5e-121 439.1 256 78.9
Atru.chr3.1494 Acer truncatum HOM05D006283 ORTHO05D007727 2.3e-119 432.6 275 73.1
Thecc.04G180000 Theobroma cacao HOM05D006283 ORTHO05D007727 2.3e-119 432.6 275 74.2
Manes.11G120300 Manihot esculenta HOM05D006283 ORTHO05D007727 5.7e-118 427.9 248 77.8
CANSAT78G1066 Cannabis sativa HOM05D006283 ORTHO05D007727 9.7e-118 427.2 255 77.6
Ciclev10021635m.g Citrus clementina HOM05D006283 ORTHO05D007727 2.8e-117 425.6 262 74.8
RcHm_v2.0_Chr4g0406391 Rosa chinensis HOM05D006283 ORTHO05D007727 3.7e-117 425.2 274 72.3
Potri.019G051300 Populus trichocarpa HOM05D006283 ORTHO05D007727 4.1e-116 421.8 252 77.0
MD04G1040100 Malus domestica HOM05D006283 ORTHO05D007727 9.1e-116 420.6 274 70.1
Prupe.1G192800 Prunus persica HOM05D006283 ORTHO05D007727 1.2e-115 420.2 275 70.2
Gohir.A10G137000 Gossypium hirsutum HOM05D006283 ORTHO05D007727 5.9e-115 417.9 275 72.4
Gohir.D10G129700 Gossypium hirsutum HOM05D006283 ORTHO05D007727 5.9e-115 417.9 275 72.4
Gorai.011G143000 Gossypium raimondii HOM05D006283 ORTHO05D007727 5.9e-115 417.9 275 72.4
TAR362G0864 Trochodendron aralioides HOM05D006283 ORTHO05D007727 5.9e-115 417.9 248 75.8
MELO3C017715.2 Cucumis melo HOM05D006283 ORTHO05D007727 8.5e-114 414.1 270 71.5
FvH4_4g10770 Fragaria vesca HOM05D006283 ORTHO05D007727 1.5e-113 413.3 248 75.4
CsaV3_4G003450 Cucumis sativus L. HOM05D006283 ORTHO05D007727 1.9e-113 412.9 264 72.7
CiPaw.02G054900 Carya illinoinensis HOM05D006283 ORTHO05D007727 4.2e-113 411.8 262 73.3
TWI15G0224 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 1.2e-112 410.2 262 71.0
TWI15G1054 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 1.2e-112 410.2 262 71.0
Dinv22729 Davidia involucrata HOM05D006283 ORTHO05D007727 1.6e-112 409.8 248 73.8
Eucgr.H00372 Eucalyptus grandis HOM05D006283 ORTHO05D007727 2.1e-112 409.5 255 72.2
Cc03_g13090 Coffea canephora HOM05D006283 ORTHO05D007727 3.6e-112 408.7 248 75.4
PSO017G4585 Papaver somniferum HOM05D006283 ORTHO05D007727 4.0e-111 405.2 258 72.5
PSO675G6362 Papaver somniferum HOM05D006283 ORTHO05D007727 4.0e-111 405.2 258 72.5
THA.LOC104803704 Tarenaya hassleriana HOM05D006283 ORTHO05D007727 4.0e-111 405.2 248 73.0
Hma1.2p1_0847F.1_g227833 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 6.7e-111 404.4 245 74.7
Sed0022341 Sechium edule HOM05D006283 ORTHO05D007727 2.6e-110 402.5 273 69.2
Sed0010312 Sechium edule HOM05D006283 ORTHO05D007727 4.4e-110 401.7 272 66.9
Aqoxy2G04092 Aquilegia oxysepala HOM05D006283 ORTHO05D007727 5.7e-110 401.4 257 71.6
Migut.N02075 Erythranthe guttata HOM05D006283 ORTHO05D007727 5.7e-110 401.4 248 72.2
Nn1g09881 Nelumbo nucifera HOM05D006283 ORTHO05D007727 9.7e-110 400.6 235 76.6
MSTRG.9766 Avicennia marina HOM05D006283 ORTHO05D007727 1.3e-109 400.2 248 73.8
PGR142G0689 Punica granatum HOM05D006283 ORTHO05D007727 3.7e-109 398.7 262 69.8
SalBow3G2028 Salvia bowleyana HOM05D006283 ORTHO05D007727 1.1e-108 397.1 248 73.0
Actinidia35975 Actinidia chinensis HOM05D006283 ORTHO05D007727 5.3e-108 394.8 269 66.9
BolC6t37776H Brassica oleracea HOM05D006283 ORTHO05D007727 1.3e-106 390.2 250 70.8
BraA07t30108Z Brassica rapa HOM05D006283 ORTHO05D007727 1.7e-106 389.8 250 70.4
AT3G59390 Arabidopsis thaliana HOM05D006283 ORTHO05D007727 2.2e-106 389.4 248 70.2
C06p26110 Brassica napus HOM05D006283 ORTHO05D007727 5.0e-106 388.3 250 70.0
Peaxi162Scf00126g00015 Petunia axillaris HOM05D006283 ORTHO05D007727 6.5e-106 387.9 248 69.8
Rhsim09G0027900 Rhododendron simsii HOM05D006283 ORTHO05D007727 6.5e-106 387.9 287 65.2
A07p24630 Brassica napus HOM05D006283 ORTHO05D007727 8.5e-106 387.5 250 70.0
AL5G41290 Arabidopsis lyrata HOM05D006283 ORTHO05D007727 1.1e-105 387.1 273 65.9
DCAR_029916 Daucus carota HOM05D006283 ORTHO05D007727 4.2e-105 385.2 248 68.5
Sp5g03750 Schrenkiella parvula HOM05D006283 ORTHO05D007727 4.2e-105 385.2 248 70.2
CARHR169780 Cardamine hirsuta HOM05D006283 ORTHO05D007727 7.2e-105 384.4 248 69.4
Thhalv10006168m.g Eutrema salsugineum HOM05D006283 ORTHO05D007727 9.4e-105 384.0 270 66.7
GSVIVG01010753001 Vitis vinifera HOM05D006283 ORTHO05D007727 1.2e-104 383.6 275 67.6
Actinidia34602 Actinidia chinensis HOM05D006283 ORTHO05D007727 3.6e-104 382.1 269 65.1
Aa31LG10G13740 Aethionema arabicum HOM05D006283 ORTHO05D007727 1.4e-103 380.2 248 68.1
Carub.0005s2613 Capsella rubella HOM05D006283 ORTHO05D007727 3.0e-103 379.0 248 67.7
HanXRQChr16g0525531 Helianthus annuus HOM05D006283 ORTHO05D007727 6.8e-103 377.9 253 68.8
Sopen06g019520 Solanum pennellii HOM05D006283 ORTHO05D007727 3.4e-102 375.6 274 63.9
Solyc06g054450.3 Solanum lycopersicum HOM05D006283 ORTHO05D007727 1.3e-101 373.6 274 63.9
Sc13g0006800 Simmondsia chinensis HOM05D006283 ORTHO05D007727 2.2e-101 372.9 282 61.7
CAN.G1247.5 Capsicum annuum HOM05D006283 ORTHO05D007727 3.7e-101 372.1 259 66.4
arahy.Tifrunner.gnm1.ann1.7GR0QN Arachis hypogaea HOM05D006283 ORTHO05D007727 1.4e-100 370.2 248 74.6
COL.COLO4_07661 Corchorus olitorius HOM05D006283 ORTHO05D007727 1.4e-100 370.2 241 73.0
arahy.Tifrunner.gnm1.ann1.9EYB94 Arachis hypogaea HOM05D006283 ORTHO05D007727 1.8e-100 369.8 248 74.6
FAN12G2405 Fragaria x ananassa HOM05D006283 ORTHO05D007727 5.4e-100 368.2 254 67.7
Lsat_1_v5_gn_4_30241 Lactuca sativa HOM05D006283 ORTHO05D007727 7.0e-100 367.9 249 66.3
Duzib151G0050 Durio zibethinus HOM05D006283 ORTHO05D007727 7.7e-99 364.4 239 73.2
ECA234G3618 Erigeron canadensis HOM05D006283 ORTHO05D007727 1.7e-98 363.2 253 65.6
Nitab4.5_0000130g0340 Nicotiana tabacum HOM05D006283 ORTHO05D007727 7.2e-97 357.8 233 69.1
Zm00001eb406800 Zea mays HOM05D006283 ORTHO05D007727 2.3e-95 352.8 247 65.6
PGSC0003DMG400030791 Solanum tuberosum HOM05D006283 ORTHO05D007727 2.2e-93 346.3 222 70.3
Oeu034461.3 Olea europaea HOM05D006283 ORTHO05D007727 3.1e-92 342.4 227 70.5
Haze_01514 Corylus avellana HOM05D006283 ORTHO05D007727 5.9e-91 338.2 277 61.0
BcaC08g44981 Brassica carinata HOM05D006283 ORTHO05D007727 6.6e-90 334.7 233 67.0
EL10Ac3g05930 Beta vulgaris HOM05D006283 ORTHO05D007727 1.9e-89 333.2 232 68.1
BcaB02g07471 Brassica carinata HOM05D006283 ORTHO05D007727 2.5e-89 332.8 233 66.1
unitig_747.g21679 Utricularia gibba HOM05D006283 ORTHO05D007727 1.2e-88 330.5 236 61.4
CDE08G0087 Ceratophyllum demersum HOM05D006283 ORTHO05D007727 2.3e-87 326.2 230 65.2
Hund12011 Selenicereus undatus HOM05D006283 ORTHO05D007727 6.4e-85 318.2 200 71.5
AUR62015391 Chenopodium quinoa HOM05D006283 ORTHO05D007727 1.2e-80 303.9 193 72.0
HPP92_009172 Vanilla planifolia HOM05D006283 ORTHO05D007727 1.6e-80 303.5 217 63.1
Glyma.12G052600 Glycine max HOM05D006283 ORTHO05D007727 2.8e-80 302.8 178 82.6
Duzib268G1109 Durio zibethinus HOM05D006283 ORTHO05D007727 3.6e-80 302.4 175 80.0
Pp3c25_2030 Physcomitrium patens HOM05D006283 ORTHO05D007727 2.4e-76 289.7 236 56.8
AUR62002299 Chenopodium quinoa HOM05D006283 ORTHO05D007727 4.6e-75 285.4 183 70.5
SMO119G0098 Selaginella moellendorffii HOM05D006283 ORTHO05D007727 4.3e-73 278.9 236 50.8
Mapoly0093s0081 Marchantia polymorpha HOM05D006283 ORTHO05D007727 1.2e-72 277.3 234 50.4
SGA_v2.0_scaffold12G06158 Striga asiatica HOM05D006283 ORTHO05D007727 1.3e-69 267.3 262 52.7
QL10p048744 Quercus lobata HOM05D006283 ORTHO05D007727 8.1e-64 248.1 139 79.9
Sabra19G0057300 Salix brachista HOM05D006283 ORTHO05D007727 9.2e-60 234.6 139 78.4
Lj3A196G22 Lonicera japonica HOM05D006283 ORTHO05D007727 3.4e-54 216.1 136 68.4
SEGI_31631 Sequoiadendron giganteum HOM05D006283 ORTHO05D007727 1.9e-52 210.3 161 57.1
ATR0824G015 Amborella trichopoda HOM05D006283 ORTHO05D007727 1.0e-50 204.5 144 66.7
FAN07G2518 Fragaria x ananassa HOM05D006283 ORTHO05D007727 2.3e-50 203.4 138 71.0
Hma1.2p1_0639F.1_g194055 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 1.1e-47 194.5 131 71.0
Hma1.2p1_0847F.1_g227840 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 1.1e-47 194.5 131 71.0
RcHm_v2.0_Chr4g0406831 Rosa chinensis HOM05D006283 ORTHO05D007727 1.2e-46 191.0 158 58.9
QL10p048749 Quercus lobata HOM05D006283 ORTHO05D007727 3.4e-46 189.5 111 75.7
FAN12G0556 Fragaria x ananassa HOM05D006283 ORTHO05D007727 1.7e-45 187.2 129 62.8
Psat7g091240 Pisum sativum HOM05D006283 ORTHO05D007727 1.0e-42 177.9 174 58.0
vmacro00624 Vaccinium macrocarpon HOM05D006283 ORTHO05D007727 1.9e-41 173.7 150 58.7
Cre16.g673841 Chlamydomonas reinhardtii HOM05D006283 ORTHO05D007727 1.1e-33 147.9 237 33.8
Prupe.1G193700 Prunus persica HOM05D006283 ORTHO05D007727 2.6e-30 136.7 103 60.2
ClCG07G015660 Citrullus lanatus HOM05D006283 ORTHO05D007727 3.8e-29 132.9 257 37.0
Peaxi162Scf00126g00003 Petunia axillaris HOM05D006283 ORTHO05D007727 3.9e-26 122.9 111 55.0
Lj3A196T13 Lonicera japonica HOM05D006283 ORTHO05D007727 3.7e-24 116.3 95 56.8
RcHm_v2.0_Chr4g0406821 Rosa chinensis HOM05D006283 ORTHO05D007727 4.8e-24 115.9 62 79.0
HanXRQChr16g0525261 Helianthus annuus HOM05D006283 ORTHO05D007727 4.6e-19 99.4 68 64.7
vmacro00625 Vaccinium macrocarpon HOM05D006283 ORTHO05D007727 7.4e-17 92.0 60 75.0
Hma1.2p1_0639F.1_g194050 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 3.1e-15 86.7 44 86.4
Hma1.2p1_0847F.1_g227839 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 3.1e-15 86.7 44 86.4
Os11g0267100 Oryza sativa ssp. japonica HOM05D006283 ORTHO05D007727 1.4e-12 77.8 52 61.5
PRCOL_00001858 Prasinoderma coloniale HOM05D006283 ORTHO05D007727 1.8e-10 70.9 146 28.8
Cfa015166 Carpinus fangiana HOM05D006283 ORTHO05D007727 3.0e-10 70.1 41 80.5
Ah.07g201980 Amaranthus hybridus HOM05D006283 ORTHO05D007727 8.2e-08 62.0 52 55.8
CSS0010514 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.8e-07 60.8 38 71.1
CSS0034877 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.8e-07 60.8 38 71.1
CSS0022675 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 2.4e-07 60.5 75 45.3
CSS0026672 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 2.4e-07 60.5 75 45.3
C09p49630 Brassica napus HOM05D006283 ORTHO05D007727 4.1e-07 59.7 45 53.3
BolC3t18408H Brassica oleracea HOM05D006283 ORTHO05D007727 4.1e-07 59.7 45 53.3


User provided reference genes

Program Settings