Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 5.0e-265 917.1 446 100.0
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 5.4e-227 790.8 446 84.5
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 9.0e-206 720.3 447 77.0
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 1.0e-196 690.3 446 73.5
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 4.2e-195 684.9 444 73.2
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 1.2e-194 683.3 384 85.9
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 8.8e-193 677.2 447 72.5
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 3.7e-191 671.8 446 70.9
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 1.1e-190 670.2 446 70.9
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 5.3e-190 667.9 446 70.9
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 1.1e-182 643.7 420 73.1
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 1.1e-171 607.1 446 63.5
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 1.8e-169 599.7 444 63.7
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 1.7e-167 593.2 446 64.6
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 2.8e-167 592.4 446 63.5
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 2.7e-165 585.9 446 61.9
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 8.6e-164 580.9 446 61.0
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.5e-163 580.1 446 65.5
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 2.5e-163 579.3 446 62.8
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 7.2e-163 577.8 446 61.0
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.2e-162 577.0 446 62.8
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 1.6e-162 576.6 392 69.9
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 2.1e-162 576.2 446 62.1
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 4.7e-162 575.1 446 60.3
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 8.0e-162 574.3 429 65.3
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 8.0e-162 574.3 445 62.2
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 1.2e-160 570.5 446 60.5
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 2.6e-160 569.3 446 60.1
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 4.4e-160 568.5 446 61.0
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 5.7e-160 568.2 446 59.9
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 5.7e-160 568.2 446 60.5
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 7.5e-160 567.8 446 59.9
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 7.5e-160 567.8 446 60.8
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 1.7e-159 566.6 446 60.1
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 3.7e-159 565.5 446 59.9
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 8.3e-159 564.3 446 59.9
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 1.4e-158 563.5 479 58.9
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 2.4e-158 562.8 446 61.0
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 2.4e-158 562.8 447 60.6
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 2.4e-158 562.8 446 59.6
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 3.1e-158 562.4 458 58.3
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 5.4e-158 561.6 446 59.6
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 7.0e-158 561.2 446 59.4
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 1.2e-157 560.5 449 60.4
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 2.0e-157 559.7 446 60.5
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 2.7e-157 559.3 446 59.2
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 7.8e-157 557.8 446 61.0
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 1.0e-156 557.4 444 59.5
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 1.3e-156 557.0 446 59.2
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.3e-156 557.0 446 59.0
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 2.3e-156 556.2 444 59.2
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 1.5e-155 553.5 446 60.3
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 1.9e-155 553.1 491 55.4
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 2.8e-154 549.3 444 59.0
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 3.6e-154 548.9 447 59.7
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 1.4e-153 547.0 446 59.2
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 1.8e-153 546.6 446 58.5
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 2.3e-153 546.2 446 57.8
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 3.1e-153 545.8 448 58.7
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 3.1e-153 545.8 422 62.6
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 3.4e-152 542.3 446 58.3
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 4.9e-151 538.5 444 58.8
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.9e-150 536.6 447 58.4
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 1.9e-150 536.6 446 59.0
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 2.4e-150 536.2 446 56.3
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 1.6e-149 533.5 447 58.2
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 2.0e-149 533.1 447 57.7
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 1.9e-147 526.6 446 58.5
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 1.9e-147 526.6 446 57.6
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 2.5e-147 526.2 447 55.3
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 4.3e-147 525.4 446 54.9
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 1.2e-144 517.3 445 55.7
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 2.6e-144 516.2 461 54.7
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 5.8e-144 515.0 447 53.5
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 5.8e-144 515.0 446 55.4
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 5.8e-144 515.0 446 55.4
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 1.3e-143 513.8 446 54.9
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 1.3e-143 513.8 446 54.9
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 2.2e-143 513.1 446 57.0
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 6.4e-143 511.5 446 55.4
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 1.1e-142 510.8 446 54.0
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 2.7e-141 506.1 446 54.5
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 1.7e-140 503.4 446 54.7
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 3.9e-140 502.3 403 59.1
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 4.3e-139 498.8 444 54.3
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 1.1e-137 494.2 443 54.0
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.8e-137 493.4 421 59.1
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.8e-137 493.4 367 63.2
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 1.5e-136 490.3 367 65.4
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 1.3e-135 487.3 385 60.8
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 1.9e-134 483.4 446 53.4
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.9e-134 483.4 383 64.2
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 1.7e-132 476.9 448 53.1
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 2.1e-130 469.9 446 54.0
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 1.1e-129 467.6 441 54.9
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 4.0e-129 465.7 446 52.2
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 5.8e-128 461.8 446 53.8
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 4.9e-127 458.8 369 61.5
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 1.2e-125 454.1 385 55.3
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 2.8e-122 443.0 447 49.2
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 2.8e-122 443.0 447 49.2
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 2.8e-122 443.0 447 49.2
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 2.2e-119 433.3 446 50.2
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 2.9e-119 433.0 447 49.9
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 6.0e-117 425.2 316 63.0
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 6.6e-116 421.8 468 47.4
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 2.1e-114 416.8 446 50.4
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 8.1e-114 414.8 449 47.4
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 8.1e-114 414.8 439 49.9
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 4.5e-112 409.1 419 50.4
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 1.7e-111 407.1 463 46.7
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 6.4e-111 405.2 447 48.1
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 6.1e-93 345.5 310 56.5
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 7.9e-93 345.1 454 41.4
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 5.7e-91 339.0 448 41.7
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 9.7e-91 338.2 375 50.4
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 2.8e-90 336.7 310 53.5
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 1.2e-88 331.3 444 40.1
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 2.2e-87 327.0 438 40.4
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 1.9e-86 323.9 231 65.8
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 1.4e-81 307.8 448 39.7
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 2.4e-81 307.0 383 44.1
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 4.1e-81 306.2 439 39.0
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 9.1e-81 305.1 246 58.1
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 1.2e-80 304.7 417 38.6
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 1.7e-79 300.8 448 38.8
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 7.7e-72 275.4 186 69.9
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 2.7e-69 266.9 254 57.5
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 7.0e-65 252.3 315 45.7
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 1.3e-55 221.5 510 31.2
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 1.4e-52 211.5 146 70.5
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 2.0e-51 207.6 480 30.2
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 2.6e-43 180.6 149 56.4
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 1.4e-33 148.3 137 51.8
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 3.0e-31 140.6 475 28.2
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 6.8e-28 129.4 100 56.0
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 2.2e-26 124.4 123 56.1
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 1.1e-22 112.1 100 51.0
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 5.2e-20 103.2 72 58.3
MCO09G831 Micromonas commoda HOM05D001043 ORTHO05D006432 3.6e-13 80.5 350 24.3
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 1.1e-09 68.9 71 47.9
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 5.1e-07 60.1 112 36.6
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 8.7e-07 59.3 168 28.6
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.5e-06 58.5 168 27.4
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 2.5e-06 57.8 154 31.2
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 5.6e-06 56.6 136 30.9
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 7.3e-06 56.2 112 33.9
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 9.6e-06 55.8 112 34.8


User provided reference genes

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