Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 1.1e-190 669.8 366 100.0
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 1.1e-164 583.6 322 87.0
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 2.4e-164 582.4 322 87.6
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 5.4e-164 581.3 322 87.0
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 5.9e-163 577.8 322 87.9
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 1.1e-161 573.5 322 87.3
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 2.5e-161 572.4 419 73.7
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 3.1e-159 565.5 322 86.0
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 6.4e-157 557.8 322 83.2
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 4.0e-151 538.5 323 82.4
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 8.9e-151 537.3 322 80.4
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 2.2e-149 532.7 322 79.5
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 4.9e-149 531.6 322 79.5
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 3.2e-148 528.9 322 79.5
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 3.9e-146 521.9 322 79.2
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.9e-140 503.1 322 75.5
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 7.1e-140 501.1 322 76.1
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 6.2e-136 488.0 322 72.7
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 3.4e-134 482.3 322 73.0
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 3.2e-132 475.7 322 72.7
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 7.1e-132 474.6 323 71.2
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 2.1e-131 473.0 322 70.5
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 2.1e-131 473.0 323 70.3
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 1.0e-130 470.7 323 70.0
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.0e-130 470.7 323 69.0
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 8.7e-130 467.6 345 68.1
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 4.8e-128 461.8 325 69.2
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 4.8e-128 461.8 323 69.0
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 4.8e-128 461.8 323 68.7
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 8.1e-128 461.1 327 68.8
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 5.3e-127 458.4 323 68.4
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 3.4e-126 455.7 328 68.9
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 5.8e-126 454.9 324 68.2
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 1.7e-125 453.4 329 67.2
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 2.2e-125 453.0 322 67.4
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 2.2e-125 453.0 325 67.7
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 8.4e-125 451.1 323 67.8
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 3.2e-124 449.1 325 67.1
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 5.4e-124 448.4 321 67.0
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 9.3e-124 447.6 323 66.6
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 9.3e-124 447.6 324 67.6
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 1.6e-123 446.8 325 66.5
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 1.6e-123 446.8 325 67.1
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 2.1e-123 446.4 325 66.8
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 1.0e-122 444.1 325 67.1
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 1.7e-122 443.4 328 66.8
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 3.9e-122 442.2 323 67.2
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 3.3e-121 439.1 324 65.1
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 4.3e-121 438.7 323 65.6
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 4.3e-121 438.7 289 71.3
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 2.8e-120 436.0 342 62.6
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.4e-119 433.7 351 61.5
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 2.0e-118 429.9 324 63.9
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 9.9e-118 427.6 321 64.5
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 2.9e-117 426.0 324 63.3
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 3.8e-117 425.6 324 63.6
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 4.9e-117 425.2 322 63.7
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 6.4e-117 424.9 322 62.7
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 8.4e-117 424.5 327 63.9
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 4.2e-116 422.2 324 63.0
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 7.1e-116 421.4 322 64.6
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 1.6e-115 420.2 321 63.9
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 2.1e-115 419.9 324 63.3
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 3.5e-115 419.1 325 65.5
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 3.5e-115 419.1 322 63.7
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 6.0e-115 418.3 323 63.5
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 7.9e-115 417.9 323 63.5
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 1.8e-114 416.8 326 60.7
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 5.1e-114 415.2 323 64.4
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 2.5e-113 412.9 325 61.8
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 4.8e-112 408.7 323 63.2
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 6.2e-112 408.3 323 65.3
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.4e-111 407.1 336 62.8
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.8e-111 406.8 290 67.9
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 5.3e-111 405.2 360 56.9
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 6.9e-111 404.8 326 59.5
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 7.6e-110 401.4 324 62.0
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 2.9e-109 399.4 336 60.7
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 2.9e-109 399.4 323 61.3
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 3.2e-108 396.0 326 61.7
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 7.1e-108 394.8 329 61.1
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 1.2e-107 394.0 324 61.4
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 8.7e-106 387.9 325 61.2
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 1.1e-105 387.5 273 68.9
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 3.3e-105 386.0 325 58.2
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.3e-104 384.0 263 71.1
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 2.1e-104 383.3 327 56.0
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.8e-104 382.1 324 60.8
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 8.2e-104 381.3 262 71.4
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 1.8e-103 380.2 327 55.7
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 2.4e-103 379.8 323 58.2
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 4.5e-102 375.6 327 56.3
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 7.6e-102 374.8 324 59.3
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.3e-101 374.0 328 57.0
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 1.7e-101 373.6 324 58.6
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 1.4e-100 370.5 323 57.0
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 2.7e-99 366.3 323 57.6
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 6.1e-99 365.2 268 66.4
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 1.0e-98 364.4 329 53.8
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.7e-98 361.7 332 56.6
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 6.7e-98 361.7 324 57.4
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 1.9e-97 360.1 323 54.8
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 2.2e-96 356.7 328 53.0
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 4.1e-95 352.4 340 55.0
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 6.9e-95 351.7 327 54.7
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 9.0e-95 351.3 329 55.0
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.5e-94 350.5 324 55.6
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 5.9e-94 348.6 322 56.5
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.3e-93 347.4 334 54.8
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 1.4e-92 344.0 324 54.3
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 2.3e-90 336.7 324 58.0
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 1.7e-88 330.5 336 55.7
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 3.1e-87 326.2 263 60.8
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 1.5e-86 323.9 331 49.8
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 7.7e-86 321.6 301 53.5
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 3.8e-85 319.3 326 54.3
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.4e-84 317.4 305 52.5
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 2.5e-84 316.6 261 58.2
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 1.2e-83 314.3 332 52.7
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 1.2e-83 314.3 341 48.1
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 3.6e-83 312.8 272 56.2
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 1.8e-82 310.5 336 46.7
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 5.3e-79 298.9 325 50.2
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 1.3e-77 294.3 323 50.8
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 1.9e-76 290.4 327 50.2
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 2.1e-75 287.0 327 48.9
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 3.6e-75 286.2 253 54.2
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 2.9e-69 266.5 305 46.6
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 4.0e-58 229.6 323 43.3
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 4.1e-55 219.5 145 69.0
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 6.6e-53 212.2 226 53.1
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.2e-49 201.4 278 42.1
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 2.0e-46 190.7 133 63.2
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 1.9e-44 184.1 386 34.2
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 2.3e-42 177.2 189 50.3
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 4.4e-41 172.9 124 59.7
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 6.6e-37 159.1 252 37.3
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 4.3e-36 156.4 326 34.7
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.2e-35 152.5 182 48.9
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.0e-33 147.5 143 55.2
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 5.2e-26 122.9 125 47.2
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 1.9e-20 104.4 53 84.9
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 2.5e-20 104.0 76 60.5
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 8.1e-19 99.0 74 68.9
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 3.4e-17 93.6 74 67.6
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 7.6e-17 92.4 52 75.0
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 7.6e-17 92.4 52 75.0
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.8e-16 90.1 100 43.0
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 3.2e-15 87.0 52 73.1
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 4.2e-15 86.7 52 73.1
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 1.2e-14 85.1 52 71.2
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.7e-13 81.3 53 67.9
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 3.0e-13 80.5 54 64.8
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.1e-11 74.3 54 64.8
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.4e-10 70.9 53 56.6


User provided reference genes

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