Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 4.7e-151 538.1 333 100.0
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 1.3e-52 211.1 174 70.1
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 6.2e-50 202.2 476 35.9
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 3.1e-49 199.9 176 73.3
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 2.6e-48 196.8 177 65.5
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 5.1e-44 182.6 176 68.8
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 7.3e-43 178.7 173 69.9
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 3.6e-42 176.4 175 59.4
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 8.1e-42 175.3 170 60.0
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 8.1e-42 175.3 170 60.0
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 2.0e-40 170.6 165 66.1
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 9.9e-40 168.3 172 55.8
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 1.7e-39 167.5 172 58.1
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 2.9e-39 166.8 172 57.0
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 3.8e-39 166.4 166 60.2
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 4.9e-39 166.0 168 58.3
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 6.4e-39 165.6 172 56.4
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 1.1e-38 164.9 171 59.1
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 1.1e-38 164.9 168 57.1
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 1.9e-38 164.1 172 64.0
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 1.9e-38 164.1 168 56.5
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 2.4e-38 163.7 170 54.1
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 5.4e-38 162.5 173 61.8
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 7.1e-38 162.2 173 56.1
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 9.3e-38 161.8 172 57.6
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 4.6e-37 159.5 167 55.7
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 6.0e-37 159.1 172 61.0
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 6.0e-37 159.1 173 55.5
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 2.3e-36 157.1 172 52.9
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 3.9e-36 156.4 173 62.4
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 1.5e-35 154.5 168 54.8
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 1.9e-35 154.1 169 56.2
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 2.5e-35 153.7 186 60.8
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 2.5e-35 153.7 169 56.8
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 4.3e-35 152.9 172 52.9
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 5.6e-35 152.5 175 60.6
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 5.6e-35 152.5 167 54.5
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 7.3e-35 152.1 172 62.2
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 9.6e-35 151.8 170 61.8
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 2.1e-34 150.6 169 56.2
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 2.1e-34 150.6 170 52.9
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 6.2e-34 149.1 180 52.8
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 6.2e-34 149.1 168 51.8
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 8.1e-34 148.7 172 58.1
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 1.1e-33 148.3 174 51.7
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 1.1e-33 148.3 172 51.2
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 1.1e-33 148.3 165 52.7
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 1.8e-33 147.5 172 59.9
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 1.8e-33 147.5 170 61.2
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 3.1e-33 146.7 171 61.4
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 2.0e-32 144.1 167 53.3
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 2.0e-32 144.1 166 51.2
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 4.4e-32 142.9 172 58.1
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 4.4e-32 142.9 171 59.1
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 4.4e-32 142.9 171 59.1
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 5.8e-32 142.5 170 60.0
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 7.6e-32 142.1 168 61.3
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 9.9e-32 141.7 173 48.6
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 9.9e-32 141.7 168 58.9
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 1.3e-31 141.4 203 44.8
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 1.3e-31 141.4 169 62.1
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 2.2e-31 140.6 172 50.6
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 2.2e-31 140.6 167 50.3
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 2.2e-31 140.6 174 50.6
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 4.9e-31 139.4 171 58.5
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 4.9e-31 139.4 171 57.3
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 8.4e-31 138.7 172 47.1
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 2.4e-30 137.1 166 52.4
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 3.2e-30 136.7 174 53.4
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 1.2e-29 134.8 137 58.4
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 2.1e-29 134.0 154 51.3
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 2.7e-29 133.7 166 48.2
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 4.6e-29 132.9 185 55.7
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 6.0e-29 132.5 490 29.6
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 7.9e-29 132.1 172 57.6
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 7.9e-29 132.1 174 56.9
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 1.3e-28 131.3 251 38.2
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 1.7e-28 131.0 173 48.0
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 1.1e-27 128.3 95 67.4
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 1.1e-27 128.3 173 56.1
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 1.5e-27 127.9 167 54.5
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 2.5e-27 127.1 226 39.8
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 9.6e-27 125.2 171 55.6
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 9.6e-27 125.2 172 52.3
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 9.6e-27 125.2 173 53.8
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 3.6e-26 123.2 168 47.6
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 6.2e-26 122.5 168 56.0
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 1.4e-25 121.3 171 52.0
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 2.4e-25 120.6 172 55.8
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 3.1e-25 120.2 165 52.1
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 5.3e-25 119.4 167 49.7
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 6.9e-25 119.0 174 52.9
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 9.0e-25 118.6 174 52.3
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 9.0e-25 118.6 165 54.5
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 1.2e-24 118.2 174 53.4
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.5e-24 117.9 174 53.4
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 2.0e-24 117.5 168 56.5
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 5.8e-24 115.9 199 39.7
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 1.3e-23 114.8 177 44.6
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 1.7e-23 114.4 168 54.8
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 2.2e-23 114.0 178 45.5
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 2.9e-23 113.6 166 50.0
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 6.4e-23 112.5 172 52.3
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 1.1e-22 111.7 138 44.9
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 1.4e-22 111.3 176 42.6
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 4.2e-22 109.8 175 52.6
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 6.0e-21 105.9 132 56.8
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 7.9e-21 105.5 87 62.1
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.0e-20 105.1 172 51.2
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 1.8e-20 104.4 167 43.7
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 1.8e-20 104.4 141 49.6
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 3.0e-20 103.6 166 44.0
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 3.0e-20 103.6 168 51.2
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 5.1e-20 102.8 168 51.8
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 8.7e-20 102.1 172 50.6
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 8.7e-20 102.1 172 50.6
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 1.9e-19 100.9 166 49.4
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 2.5e-19 100.5 126 51.6
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 7.4e-19 99.0 166 51.2
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 1.3e-18 98.2 167 45.5
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 2.8e-18 97.1 167 45.5
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 3.7e-18 96.7 174 42.0
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 3.7e-18 96.7 69 68.1
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 8.1e-18 95.5 90 53.3
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 1.8e-17 94.4 166 45.8
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 2.4e-17 94.0 170 48.8
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 2.4e-17 94.0 170 48.8
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 5.3e-17 92.8 167 47.9
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 9.0e-17 92.0 89 55.1
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 1.3e-15 88.2 144 39.6
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 3.8e-15 86.7 91 49.5
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 4.9e-15 86.3 170 47.6
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 4.9e-15 86.3 170 47.6
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 4.9e-15 86.3 86 52.3
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 8.4e-15 85.5 168 38.7
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 1.4e-14 84.7 86 51.2
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 1.2e-13 81.6 96 50.0
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 1.0e-12 78.6 168 44.0
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 2.6e-08 63.9 122 41.8
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 2.2e-07 60.8 126 37.3
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 2.9e-07 60.5 57 64.9


User provided reference genes

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