Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34176 Trifolium pratense HOM05D001544 ORTHO05D005712 1.3e-103 379.8 207 100.0
Medtr4g032740 Medicago truncatula HOM05D001544 ORTHO05D005712 2.2e-82 309.3 215 76.3
Psat7g226160 Pisum sativum HOM05D001544 ORTHO05D005712 2.5e-81 305.8 213 82.2
Lalb_Chr01g0002161 Lupinus albus HOM05D001544 ORTHO05D005712 9.4e-73 277.3 176 79.0
Lj3g0003276 Lotus japonicus HOM05D001544 ORTHO05D005712 1.2e-72 276.9 175 78.9
arahy.Tifrunner.gnm1.ann1.3WL649 Arachis hypogaea HOM05D001544 ORTHO05D005712 7.4e-70 267.7 186 72.6
Glyma.11G111600 Glycine max HOM05D001544 ORTHO05D005712 1.3e-61 240.4 168 73.8
Glyma.01G006900 Glycine max HOM05D001544 ORTHO05D005712 9.1e-60 234.2 172 70.3
Phvul.011G039500 Phaseolus vulgaris HOM05D001544 ORTHO05D005712 2.5e-57 226.1 168 70.2
Gohir.D02G220200 Gossypium hirsutum HOM05D001544 ORTHO05D005712 2.3e-55 219.5 176 61.9
Gorai.005G248100 Gossypium raimondii HOM05D001544 ORTHO05D005712 2.3e-55 219.5 176 61.9
Gohir.A03G198800 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.5e-54 216.9 176 61.4
Lj3g0002354 Lotus japonicus HOM05D001544 ORTHO05D005712 4.4e-54 215.3 177 62.7
Ca_19707_v3 Cicer arietinum L. HOM05D001544 ORTHO05D005712 5.7e-54 214.9 147 75.5
Nn5g29207 Nelumbo nucifera HOM05D001544 ORTHO05D002732 1.7e-53 213.4 177 59.3
Thecc.02G076200 Theobroma cacao HOM05D001544 ORTHO05D005712 2.2e-53 213.0 174 59.2
Duzib132G0442 Durio zibethinus HOM05D001544 ORTHO05D005712 2.4e-52 209.5 170 58.8
Prupe.8G085800 Prunus persica HOM05D001544 ORTHO05D005712 4.1e-52 208.8 176 58.5
TWI79G0125 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 5.4e-52 208.4 172 58.1
MELO3C023351.2 Cucumis melo HOM05D001544 ORTHO05D005712 4.5e-51 205.3 178 59.0
QL11p046076 Quercus lobata HOM05D001544 ORTHO05D005712 4.5e-51 205.3 177 57.1
arahy.Tifrunner.gnm1.ann1.3TM7ML Arachis hypogaea HOM05D001544 ORTHO05D005712 5.9e-51 204.9 146 71.2
GSVIVG01024183001 Vitis vinifera HOM05D001544 ORTHO05D005712 1.0e-50 204.1 190 54.7
CsaV3_2G015260 Cucumis sativus L. HOM05D001544 ORTHO05D005712 1.3e-50 203.8 178 59.0
MD10G1064100 Malus domestica HOM05D001544 ORTHO05D005712 1.7e-50 203.4 205 60.5
VMungo1127G0458 Vigna mungo HOM05D001544 ORTHO05D005712 3.8e-50 202.2 175 60.0
TWI75G0115 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 6.5e-50 201.4 177 55.9
Lalb_Chr19g0138931 Lupinus albus HOM05D001544 ORTHO05D005712 1.1e-49 200.7 138 73.2
Sed0017058 Sechium edule HOM05D001544 ORTHO05D005712 5.5e-49 198.4 179 56.4
CiPaw.06G128900 Carya illinoinensis HOM05D001544 ORTHO05D005712 1.2e-48 197.2 174 58.6
TAR625G1395 Trochodendron aralioides HOM05D001544 ORTHO05D005712 1.2e-48 197.2 178 56.2
Eucgr.G01724 Eucalyptus grandis HOM05D001544 ORTHO05D005712 1.6e-48 196.8 179 54.7
PGR042G1893 Punica granatum HOM05D001544 ORTHO05D005712 4.7e-48 195.3 173 56.1
Dinv40055 Davidia involucrata HOM05D001544 ORTHO05D005712 8.0e-48 194.5 177 55.4
Atru.chr5.3135 Acer truncatum HOM05D001544 ORTHO05D005712 1.8e-47 193.4 187 52.9
Sc03g0003410 Simmondsia chinensis HOM05D001544 ORTHO05D005712 3.0e-47 192.6 178 54.5
CANSAT11G1780 Cannabis sativa HOM05D001544 ORTHO05D005712 4.0e-47 192.2 191 53.4
Ciclev10029261m.g Citrus clementina HOM05D001544 ORTHO05D005712 8.9e-47 191.0 179 53.6
Hma1.2p1_0266F.1_g106940 Hydrangea macrophylla HOM05D001544 ORTHO05D005712 8.9e-47 191.0 170 54.1
ClCG11G003920 Citrullus lanatus HOM05D001544 ORTHO05D005712 1.5e-46 190.3 174 56.3
Sed0002010 Sechium edule HOM05D001544 ORTHO05D005712 1.5e-46 190.3 181 54.1
Cfa005097 Carpinus fangiana HOM05D001544 ORTHO05D005712 2.0e-46 189.9 176 56.8
Hund14027 Selenicereus undatus HOM05D001544 ORTHO05D005712 2.6e-46 189.5 180 54.4
Aqoxy5G01497 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 3.4e-46 189.1 177 53.1
HanXRQChr14g0441601 Helianthus annuus HOM05D001544 ORTHO05D005712 3.4e-46 189.1 175 52.0
PGSC0003DMG401022539 Solanum tuberosum HOM05D001544 ORTHO05D005712 3.7e-45 185.7 175 54.3
Nitab4.5_0000753g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 4.9e-45 185.3 175 53.1
FvH4_2g10310 Fragaria vesca HOM05D001544 ORTHO05D005712 6.3e-45 184.9 176 54.5
RcHm_v2.0_Chr6g0267511 Rosa chinensis HOM05D001544 ORTHO05D005712 6.3e-45 184.9 174 52.3
FAN15G2093 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.8e-44 183.3 176 54.5
MSTRG.23282 Avicennia marina HOM05D001544 ORTHO05D005712 4.1e-44 182.2 178 52.8
HanXRQChr13g0414781 Helianthus annuus HOM05D001544 ORTHO05D005712 5.4e-44 181.8 178 50.6
Lsat_1_v5_gn_2_78361 Lactuca sativa HOM05D001544 ORTHO05D005712 9.2e-44 181.0 180 50.6
Sopen03g006440 Solanum pennellii HOM05D001544 ORTHO05D005712 9.2e-44 181.0 174 52.3
SGA_v2.0_scaffold51G18782 Striga asiatica HOM05D001544 ORTHO05D005712 1.2e-43 180.6 176 52.3
Nitab4.5_0010830g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 3.5e-43 179.1 179 52.5
PSO210G7387 Papaver somniferum HOM05D001544 ORTHO05D005712 4.5e-43 178.7 178 51.1
Carub.0005s1750 Capsella rubella HOM05D001544 ORTHO05D005712 5.9e-43 178.3 179 52.0
FAN20G3124 Fragaria x ananassa HOM05D001544 ORTHO05D005712 5.9e-43 178.3 183 52.5
SEGI_21342 Sequoiadendron giganteum HOM05D001544 ORTHO05D005712 7.8e-43 177.9 178 51.7
THA.LOC104821318 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 7.8e-43 177.9 179 51.4
AL5G31520 Arabidopsis lyrata HOM05D001544 ORTHO05D005712 1.0e-42 177.6 185 50.8
Solyc03g033650.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 1.0e-42 177.6 173 50.9
Cpa.g.sc6.211 Carica papaya HOM05D001544 ORTHO05D005712 1.3e-42 177.2 185 50.3
AT3G51100 Arabidopsis thaliana HOM05D001544 ORTHO05D005712 1.7e-42 176.8 185 51.9
Sp5g11110 Schrenkiella parvula HOM05D001544 ORTHO05D005712 1.7e-42 176.8 192 49.5
Rhsim10G0214300 Rhododendron simsii HOM05D001544 ORTHO05D005712 2.9e-42 176.0 186 51.1
CARHR160690 Cardamine hirsuta HOM05D001544 ORTHO05D005712 5.0e-42 175.3 182 50.0
QL06p034007 Quercus lobata HOM05D001544 ORTHO05D005712 5.0e-42 175.3 181 50.3
Manes.02G100900 Manihot esculenta HOM05D001544 ORTHO05D005712 6.6e-42 174.9 179 50.3
PGSC0003DMG402003620 Solanum tuberosum HOM05D001544 ORTHO05D005712 1.1e-41 174.1 174 49.4
BcaC06g33056 Brassica carinata HOM05D001544 ORTHO05D005712 3.3e-41 172.6 193 48.2
A03p48120 Brassica napus HOM05D001544 ORTHO05D005712 3.3e-41 172.6 193 48.2
C07p46160 Brassica napus HOM05D001544 ORTHO05D005712 3.3e-41 172.6 193 48.2
BolC7t45132H Brassica oleracea HOM05D001544 ORTHO05D005712 3.3e-41 172.6 193 48.2
BraA03t13919Z Brassica rapa HOM05D001544 ORTHO05D005712 3.3e-41 172.6 193 48.2
SGA_v2.0_scaffold2G01246 Striga asiatica HOM05D001544 ORTHO05D005712 3.3e-41 172.6 197 46.2
FAN24G0484 Fragaria x ananassa HOM05D001544 ORTHO05D005712 4.3e-41 172.2 204 46.6
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 5.6e-41 171.8 167 48.5
PSO675G4981 Papaver somniferum HOM05D001544 ORTHO05D005712 5.6e-41 171.8 206 45.1
SalBow8G0407 Salvia bowleyana HOM05D001544 ORTHO05D005712 7.3e-41 171.4 181 47.5
Aa31LG4G19200 Aethionema arabicum HOM05D001544 ORTHO05D005712 2.1e-40 169.9 185 48.1
Thhalv10010713m.g Eutrema salsugineum HOM05D001544 ORTHO05D005712 2.1e-40 169.9 185 49.7
Os06g0713900 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 2.1e-40 169.9 174 46.6
Aqoxy6G02390 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 2.8e-40 169.5 177 47.5
Manes.01G142600 Manihot esculenta HOM05D001544 ORTHO05D005712 4.7e-40 168.7 179 53.1
Oeu021945.1 Olea europaea HOM05D001544 ORTHO05D005712 6.1e-40 168.3 177 49.7
CSS0013177 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 8.0e-40 167.9 171 49.1
Migut.L00036 Erythranthe guttata HOM05D001544 ORTHO05D005712 8.0e-40 167.9 178 47.2
PSO541G2534 Papaver somniferum HOM05D001544 ORTHO05D005712 1.0e-39 167.5 206 44.7
Sopen02g029220 Solanum pennellii HOM05D001544 ORTHO05D005712 1.4e-39 167.2 174 48.3
Solyc02g084550.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 2.3e-39 166.4 174 48.3
Potri.007G016200 Populus trichocarpa HOM05D001544 ORTHO05D005712 6.8e-39 164.9 189 48.1
Potri.005G117400 Populus trichocarpa HOM05D001544 ORTHO05D005712 8.9e-39 164.5 189 47.1
arahy.Tifrunner.gnm1.ann1.N6BS4T Arachis hypogaea HOM05D001544 ORTHO05D005712 4.4e-38 162.2 91 82.4
DCAR_025988 Daucus carota HOM05D001544 ORTHO05D005712 4.4e-38 162.2 176 47.7
unitig_0.g2167 Utricularia gibba HOM05D001544 ORTHO05D005712 6.4e-37 158.3 178 46.1
CSS0007563 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 1.1e-36 157.5 155 49.0
RcHm_v2.0_Chr2g0099951 Rosa chinensis HOM05D001544 ORTHO05D005712 1.9e-36 156.8 180 48.3
Migut.H02483 Erythranthe guttata HOM05D001544 ORTHO05D005712 2.4e-36 156.4 170 46.5
CiPaw.07G055800 Carya illinoinensis HOM05D001544 ORTHO05D005712 3.2e-36 156.0 183 43.2
Peaxi162Scf00010g00610 Petunia axillaris HOM05D001544 ORTHO05D005712 7.0e-36 154.8 174 48.3
Prupe.7G164800 Prunus persica HOM05D001544 ORTHO05D005712 1.6e-35 153.7 172 48.8
Zm00001eb227920 Zea mays HOM05D001544 ORTHO05D005712 1.6e-35 153.7 176 46.0
Haze_03811 Corylus avellana HOM05D001544 ORTHO05D005712 1.3e-34 150.6 204 44.1
Dinv23461 Davidia involucrata HOM05D001544 ORTHO05D005712 8.6e-34 147.9 111 61.3
vmacro22095 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 1.1e-33 147.5 205 42.4
MD02G1135800 Malus domestica HOM05D001544 ORTHO05D005712 3.3e-33 146.0 180 46.7
vmacro21904 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 3.3e-33 146.0 146 52.1
MD15G1249400 Malus domestica HOM05D001544 ORTHO05D005712 4.3e-33 145.6 179 43.6
THA.LOC104826761 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 1.1e-31 141.0 171 42.1
Zm00001eb103400 Zea mays HOM05D001544 ORTHO05D005712 1.8e-31 140.2 205 39.5
EL10As8g23856 Beta vulgaris HOM05D001544 ORTHO05D005712 1.2e-30 137.5 280 35.0
Cc07_g10380 Coffea canephora HOM05D001544 ORTHO05D005712 2.0e-30 136.7 140 47.9
Lj4A214G24 Lonicera japonica HOM05D001544 ORTHO05D005712 3.4e-30 136.0 110 58.2
Dinv33599 Davidia involucrata HOM05D001544 ORTHO05D005712 1.7e-29 133.7 92 63.0
PSO170G3698 Papaver somniferum HOM05D001544 ORTHO05D005712 2.4e-28 129.8 118 51.7
HPP92_022282 Vanilla planifolia HOM05D001544 ORTHO05D005712 2.4e-28 129.8 141 45.4
MBI14_g19731_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 7.0e-28 128.3 174 43.7
Mapoly0074s0044 Marchantia polymorpha HOM05D001544 ORTHO05D005712 4.6e-27 125.6 186 43.0
Rhsim08G0035500 Rhododendron simsii HOM05D001544 ORTHO05D005712 7.8e-27 124.8 155 44.5
Thecc.01G023700 Theobroma cacao HOM05D001544 ORTHO05D005712 2.3e-26 123.2 168 38.1
Cfa006938 Carpinus fangiana HOM05D001544 ORTHO05D005712 3.3e-25 119.4 138 44.2
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 3.3e-25 119.4 175 41.7
FAN26G2191 Fragaria x ananassa HOM05D001544 ORTHO05D005712 9.5e-25 117.9 175 41.1
FAN28G0278 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.2e-24 117.5 175 41.1
Gorai.007G197500 Gossypium raimondii HOM05D001544 ORTHO05D005712 2.8e-24 116.3 172 34.9
Gohir.A11G178100 Gossypium hirsutum HOM05D001544 ORTHO05D005712 4.7e-24 115.5 171 33.9
Dinv42006 Davidia involucrata HOM05D001544 ORTHO05D002732 8.1e-24 114.8 168 39.9
Gohir.D11G185900 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.1e-23 114.4 171 34.5
Oeu037732.1 Olea europaea HOM05D001544 ORTHO05D005712 1.1e-23 114.4 133 47.4
SMO361G0705 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 5.2e-23 112.1 175 38.9
Sabra05G0096400 Salix brachista HOM05D001544 ORTHO05D005712 8.9e-23 111.3 179 38.5
CDE12G0819 Ceratophyllum demersum HOM05D001544 ORTHO05D002732 1.2e-22 110.9 149 42.3
Pp3c3_3130 Physcomitrium patens HOM05D001544 ORTHO05D005712 2.6e-22 109.8 185 33.5
CARHR160680 Cardamine hirsuta HOM05D001544 ORTHO05D005712 7.5e-22 108.2 185 40.0
Pp3c14_16330 Physcomitrium patens HOM05D001544 ORTHO05D005712 6.4e-21 105.1 169 36.1
MBI14_g19737_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 1.1e-20 104.4 78 57.7
Os09g0530700 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 1.9e-20 103.6 93 49.5
SMO004G0024 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 1.9e-20 103.6 199 36.2
Sabra07G0013400 Salix brachista HOM05D001544 ORTHO05D005712 3.5e-19 99.4 264 29.9
Zm00001eb319500 Zea mays HOM05D001544 ORTHO05D005712 1.0e-18 97.8 161 34.2
FvH4_1g12190 Fragaria vesca HOM05D001544 ORTHO05D005712 3.0e-18 96.3 141 40.4
FAN23G2664 Fragaria x ananassa HOM05D001544 ORTHO05D005712 8.6e-18 94.7 93 52.7
Pp3c26_11470 Physcomitrium patens HOM05D001544 ORTHO05D005712 8.6e-18 94.7 182 32.4
TAR381G0232 Trochodendron aralioides HOM05D001544 ORTHO05D005712 1.5e-17 94.0 103 46.6
Thecc.01G023500 Theobroma cacao HOM05D001544 ORTHO05D005712 2.5e-17 93.2 133 37.6
AagrBONN_evm.TU.Sc2ySwM_362.490 Anthoceros agrestis HOM05D001544 ORTHO05D005712 4.4e-14 82.4 93 44.1
PSO675G0307 Papaver somniferum HOM05D001544 ORTHO05D005712 7.1e-12 75.1 127 37.8
CBR_g12214 Chara braunii HOM05D068249 ORTHO05D005712 3.6e-08 62.8 234 23.9
MBI14_g19736_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 4.7e-08 62.4 53 58.5
Medtr4g065440 Medicago truncatula HOM05D001544 ORTHO05D005712 4.7e-08 62.4 35 82.9
Actinidia23006 Actinidia chinensis HOM05D001544 ORTHO05D005712 2.4e-07 60.1 53 54.7
HPP92_028379 Vanilla planifolia HOM05D001544 ORTHO05D005712 9.0e-07 58.2 125 33.6


User provided reference genes

Program Settings