Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34150 Trifolium pratense HOM05D007955 ORTHO05D010034 3.2e-54 214.9 116 100.0
Medtr4g032905 Medicago truncatula HOM05D007955 ORTHO05D010034 4.7e-37 157.9 121 76.9
arahy.Tifrunner.gnm1.ann1.T5U9L2 Arachis hypogaea HOM05D007955 ORTHO05D010034 9.1e-25 117.1 116 54.3
arahy.Tifrunner.gnm1.ann1.6E9FUG Arachis hypogaea HOM05D007955 ORTHO05D010034 1.2e-24 116.7 116 54.3
Glyma.08G239000 Glycine max HOM05D007955 ORTHO05D010034 2.0e-24 115.9 109 62.4
Sopen11g011230 Solanum pennellii HOM05D007955 ORTHO05D010034 3.5e-24 115.2 116 54.3
Cfa012936 Carpinus fangiana HOM05D007955 ORTHO05D010034 1.0e-23 113.6 123 63.4
Peaxi162Scf00391g00733 Petunia axillaris HOM05D007955 ORTHO05D010034 1.0e-23 113.6 121 62.8
Solyc11g021365.2 Solanum lycopersicum HOM05D007955 ORTHO05D010034 1.0e-23 113.6 116 53.4
Eucgr.F03002 Eucalyptus grandis HOM05D007955 ORTHO05D010034 2.9e-23 112.1 101 60.4
PGSC0003DMG400009285 Solanum tuberosum HOM05D007955 ORTHO05D010034 3.8e-23 111.7 116 62.1
Haze_21296 Corylus avellana HOM05D007955 ORTHO05D010034 5.0e-23 111.3 123 61.8
QL02p025993 Quercus lobata HOM05D007955 ORTHO05D010034 5.0e-23 111.3 126 50.0
RcHm_v2.0_Chr7g0228151 Rosa chinensis HOM05D007955 ORTHO05D010034 5.0e-23 111.3 130 47.7
Dinv41742 Davidia involucrata HOM05D007955 ORTHO05D010034 6.5e-23 110.9 112 53.6
CiPaw.07G236600 Carya illinoinensis HOM05D007955 ORTHO05D010034 1.1e-22 110.2 122 60.7
Hma1.2p1_0004F.1_g003980 Hydrangea macrophylla HOM05D007955 ORTHO05D010034 1.1e-22 110.2 89 62.9
THA.LOC104809734 Tarenaya hassleriana HOM05D007955 ORTHO05D010034 1.1e-22 110.2 95 56.8
HanXRQChr02g0044251 Helianthus annuus HOM05D007955 ORTHO05D010034 4.2e-22 108.2 105 55.2
MD15G1408300 Malus domestica HOM05D007955 ORTHO05D010034 4.2e-22 108.2 115 53.0
ECA247G2775 Erigeron canadensis HOM05D001035 ORTHO05D001045 7.2e-22 107.5 89 60.7
CARHR023000 Cardamine hirsuta HOM05D007955 ORTHO05D010034 9.4e-22 107.1 90 60.0
Sc23g0001440 Simmondsia chinensis HOM05D007955 ORTHO05D010034 9.4e-22 107.1 91 60.4
Sp1g20140 Schrenkiella parvula HOM05D007955 ORTHO05D010034 1.6e-21 106.3 119 51.3
FvH4_5g32101 Fragaria vesca HOM05D007955 ORTHO05D010034 2.1e-21 105.9 79 64.6
Aqoxy6G00096 Aquilegia oxysepala HOM05D007955 ORTHO05D010034 2.7e-21 105.5 118 57.6
Hund16783 Selenicereus undatus HOM05D007955 ORTHO05D010034 2.7e-21 105.5 85 62.4
Nitab4.5_0002013g0010 Nicotiana tabacum HOM05D007955 ORTHO05D010034 3.6e-21 105.1 127 51.2
Potri.013G108100 Populus trichocarpa HOM05D007955 ORTHO05D010034 3.6e-21 105.1 116 51.7
Aa31LG7G6520 Aethionema arabicum HOM05D007955 ORTHO05D010034 6.1e-21 104.4 90 60.0
Lsat_1_v5_gn_1_12280 Lactuca sativa HOM05D007955 ORTHO05D010034 8.0e-21 104.0 92 57.6
AT1G22630 Arabidopsis thaliana HOM05D007955 ORTHO05D010034 1.0e-20 103.6 111 51.4
BcaC07g39172 Brassica carinata HOM05D007955 ORTHO05D010034 1.0e-20 103.6 90 61.1
Carub.0001s2214 Capsella rubella HOM05D007955 ORTHO05D010034 1.0e-20 103.6 90 58.9
Nitab4.5_0003211g0020 Nicotiana tabacum HOM05D007955 ORTHO05D010034 1.0e-20 103.6 87 63.2
AL1G36160 Arabidopsis lyrata HOM05D007955 ORTHO05D010034 1.4e-20 103.2 111 50.5
BolC8t49802H Brassica oleracea HOM05D007955 ORTHO05D010034 1.4e-20 103.2 90 61.1
Thhalv10009125m.g Eutrema salsugineum HOM05D007955 ORTHO05D010034 1.4e-20 103.2 119 48.7
Duzib177G0365 Durio zibethinus HOM05D007955 ORTHO05D010034 2.3e-20 102.4 88 59.1
TWI14G1427 Tripterygium wilfordii HOM05D007955 ORTHO05D010034 2.3e-20 102.4 88 60.2
CANSAT25G1976 Cannabis sativa HOM05D007955 ORTHO05D010034 5.2e-20 101.3 73 67.1
DCAR_001459 Daucus carota HOM05D007955 ORTHO05D010034 5.2e-20 101.3 86 61.6
PGR042G1239 Punica granatum HOM05D007955 ORTHO05D010034 6.8e-20 100.9 86 58.1
EL10Ac1g00118 Beta vulgaris HOM05D007955 ORTHO05D010034 1.2e-19 100.1 84 61.9
ClCG00G002970 Citrullus lanatus HOM05D007955 ORTHO05D010034 2.6e-19 99.0 67 67.2
ClCG09G017850 Citrullus lanatus HOM05D007955 ORTHO05D010034 2.6e-19 99.0 67 67.2
Manes.18G103900 Manihot esculenta HOM05D007955 ORTHO05D010034 4.4e-19 98.2 82 63.4
CSS0011086 Camellia sinensis var. sinensis HOM05D007955 ORTHO05D010034 5.7e-19 97.8 84 57.1
SGA_v2.0_scaffold24G10574 Striga asiatica HOM05D007955 ORTHO05D010034 5.7e-19 97.8 121 56.2
Thecc.08G188200 Theobroma cacao HOM05D007955 ORTHO05D010034 5.7e-19 97.8 86 58.1
VMungo1127G1330 Vigna mungo HOM05D007955 ORTHO05D010034 5.7e-19 97.8 113 50.4
CDE05G3389 Ceratophyllum demersum HOM05D007955 ORTHO05D010034 7.5e-19 97.4 111 49.5
PSO170G1023 Papaver somniferum HOM05D007955 ORTHO05D010034 1.3e-18 96.7 121 58.7
Gohir.A05G273100 Gossypium hirsutum HOM05D007955 ORTHO05D010034 4.8e-18 94.7 79 60.8
Gohir.D05G275500 Gossypium hirsutum HOM05D007955 ORTHO05D010034 4.8e-18 94.7 79 60.8
Gorai.009G288600 Gossypium raimondii HOM05D007955 ORTHO05D010034 4.8e-18 94.7 79 60.8
Rhsim06G0114600 Rhododendron simsii HOM05D007955 ORTHO05D010034 4.8e-18 94.7 82 59.8
MELO3C021951.2 Cucumis melo HOM05D007955 ORTHO05D010034 1.4e-17 93.2 67 62.7
CsaV3_2G014460 Cucumis sativus L. HOM05D007955 ORTHO05D010034 1.4e-17 93.2 67 62.7
PSO782G1662 Papaver somniferum HOM05D007955 ORTHO05D010034 2.4e-17 92.4 93 68.8
HPP92_004623 Vanilla planifolia HOM05D007955 ORTHO05D010034 4.1e-17 91.7 96 63.5
Cc00_g22060 Coffea canephora HOM05D007955 ORTHO05D010034 2.0e-16 89.4 59 71.2
SEGI_23617 Sequoiadendron giganteum HOM05D007955 ORTHO05D010034 2.0e-16 89.4 66 78.8
Zm00001eb356110 Zea mays HOM05D007955 ORTHO05D010034 1.0e-15 87.0 62 87.1
SMO119G0376 Selaginella moellendorffii HOM05D007955 ORTHO05D010034 1.3e-15 86.7 62 79.0
unitig_578.g16590 Utricularia gibba HOM05D007955 ORTHO05D010034 1.7e-15 86.3 61 88.5
Migut.C01298 Erythranthe guttata HOM05D007955 ORTHO05D010034 2.2e-15 85.9 94 52.1
MBI03_g18672_MAGBIO Magnolia biondii HOM05D007955 ORTHO05D010034 2.2e-15 85.9 96 50.0
C08p21650 Brassica napus HOM05D000726 ORTHO05D010034 2.9e-15 85.5 82 56.1
A08p28450 Brassica napus HOM05D000726 ORTHO05D010034 1.9e-14 82.8 98 52.0
FAN08G1854 Fragaria x ananassa HOM05D000666 ORTHO05D001431 1.9e-14 82.8 50 74.0
BraA08t34774Z Brassica rapa HOM05D000726 ORTHO05D010034 3.2e-14 82.0 94 48.9
Mapoly0510s0001 Marchantia polymorpha HOM05D007955 ORTHO05D010034 3.2e-14 82.0 86 66.3
FAN13G0857 Fragaria x ananassa HOM05D000666 ORTHO05D001431 4.2e-14 81.6 50 74.0
AagrBONN_evm.TU.Sc2ySwM_228.898 Anthoceros agrestis HOM05D007955 ORTHO05D010034 5.5e-14 81.3 88 61.4
Pp3c19_10130 Physcomitrium patens HOM05D007955 ORTHO05D010034 1.3e-10 70.1 74 48.6
Prupe.1G552800 Prunus persica HOM05D007955 ORTHO05D010034 3.7e-10 68.6 121 38.0
Sed0016691 Sechium edule HOM05D007955 ORTHO05D010034 3.7e-10 68.6 34 82.4
Nn3g20179 Nelumbo nucifera HOM05D007955 ORTHO05D010034 7.0e-09 64.3 102 42.2
Os05g0105800 Oryza sativa ssp. japonica HOM05D007955 ORTHO05D010034 6.6e-07 57.8 45 62.2
vmacro12469 Vaccinium macrocarpon HOM05D007955 ORTHO05D010034 1.9e-06 56.2 46 63.0


User provided reference genes

Program Settings