Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3415 Trifolium pratense HOM05D007727 ORTHO05D009078 3.5e-95 351.7 186 100.0
TPR.G3425 Trifolium pratense HOM05D007727 ORTHO05D009078 4.7e-55 218.4 116 97.4
TPR.G3394 Trifolium pratense HOM05D007727 ORTHO05D009078 4.8e-44 181.8 123 78.9
TPR.G11121 Trifolium pratense HOM05D007727 ORTHO05D009078 7.0e-43 177.9 124 78.2
Medtr8g099485 Medicago truncatula HOM05D007727 ORTHO05D009078 1.8e-38 163.3 126 72.2
Medtr8g099475 Medicago truncatula HOM05D007727 ORTHO05D009078 1.7e-33 146.7 117 74.4
Glyma.05G216900 Glycine max HOM05D007727 ORTHO05D009078 1.6e-26 123.6 124 60.5
Glyma.08G022800 Glycine max HOM05D007727 ORTHO05D009078 4.2e-24 115.5 125 60.8
Glyma.08G023200 Glycine max HOM05D007727 ORTHO05D009078 9.5e-24 114.4 123 56.1
Phvul.002G298200 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 1.4e-22 110.5 125 54.4
Phvul.002G298600 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 1.4e-22 110.5 125 54.4
Lalb_Chr05g0224131 Lupinus albus HOM05D007727 ORTHO05D009078 4.4e-21 105.5 128 53.1
VMungo0251G2989 Vigna mungo HOM05D007727 ORTHO05D009078 7.5e-21 104.8 126 50.0
Glyma.05G217200 Glycine max HOM05D007727 ORTHO05D009078 1.3e-20 104.0 124 54.8
Lj4g0015473 Lotus japonicus HOM05D007727 ORTHO05D009078 1.7e-20 103.6 127 51.2
Phvul.002G164400 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 5.4e-19 98.6 127 46.5
Glyma.11G017500 Glycine max HOM05D007727 ORTHO05D009078 8.6e-17 91.3 124 46.0
Lj4g0008549 Lotus japonicus HOM05D007727 ORTHO05D009078 1.1e-16 90.9 133 47.4
Glyma.01G225500 Glycine max HOM05D007727 ORTHO05D009078 1.9e-16 90.1 125 46.4
LjContig00312_ERROPOS870357g0016151 Lotus japonicus HOM05D007727 ORTHO05D009078 4.0e-14 82.4 128 45.3
VMungo1215G2373 Vigna mungo HOM05D007727 ORTHO05D009078 4.4e-13 79.0 124 40.3
ClCG07G011610 Citrullus lanatus HOM05D007727 ORTHO05D009078 7.0e-11 71.6 82 43.9
CsaV3_4G006600 Cucumis sativus L. HOM05D007727 ORTHO05D009078 3.5e-10 69.3 81 45.7
Dinv38830 Davidia involucrata HOM05D007727 ORTHO05D009078 3.5e-10 69.3 100 41.0
Potri.001G091400 Populus trichocarpa HOM05D007727 ORTHO05D009078 1.0e-09 67.8 92 40.2
MELO3C016295.2 Cucumis melo HOM05D007727 ORTHO05D009078 1.3e-09 67.4 82 45.1
Rhsim02G0243900 Rhododendron simsii HOM05D007727 ORTHO05D009078 1.3e-09 67.4 135 35.6
CSS0050195 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 3.0e-09 66.2 128 35.9
Medtr5g009290 Medicago truncatula HOM05D007727 ORTHO05D009078 3.9e-09 65.9 140 38.6
Rhsim02G0243800 Rhododendron simsii HOM05D007727 ORTHO05D009078 5.0e-09 65.5 92 41.3
Hma1.2p1_1746F.1_g300420 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 6.6e-09 65.1 110 38.2
QL02p030384 Quercus lobata HOM05D007727 ORTHO05D009078 6.6e-09 65.1 79 44.3
Hma1.2p1_1461F.1_g285070 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 8.6e-09 64.7 91 41.8
Cfa012009 Carpinus fangiana HOM05D007727 ORTHO05D009078 1.1e-08 64.3 102 42.2
Thecc.03G298300 Theobroma cacao HOM05D007727 ORTHO05D009078 1.1e-08 64.3 75 41.3
Potri.004G151000 Populus trichocarpa HOM05D007727 ORTHO05D009078 1.5e-08 63.9 95 42.1
Haze_09064 Corylus avellana HOM05D007727 ORTHO05D009078 1.9e-08 63.5 102 42.2
Hma1.2p1_1461F.1_g285060 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 1.9e-08 63.5 52 57.7
Hma1.2p1_2808F.1_g328866 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 1.9e-08 63.5 52 57.7
Rhsim02G0244000 Rhododendron simsii HOM05D007727 ORTHO05D009078 1.9e-08 63.5 92 41.3
Manes.02G009800 Manihot esculenta HOM05D007727 ORTHO05D009078 2.5e-08 63.2 116 37.1
Rhsim02G0243600 Rhododendron simsii HOM05D007727 ORTHO05D009078 2.5e-08 63.2 55 50.9
Rhsim02G0243700 Rhododendron simsii HOM05D007727 ORTHO05D009078 3.3e-08 62.8 90 44.4
Potri.003G140200 Populus trichocarpa HOM05D007727 ORTHO05D009078 4.3e-08 62.4 94 42.6
Potri.003G140233 Populus trichocarpa HOM05D007727 ORTHO05D009078 4.3e-08 62.4 94 42.6
Potri.003G140266 Populus trichocarpa HOM05D007727 ORTHO05D009078 4.3e-08 62.4 94 42.6
QL02p030408 Quercus lobata HOM05D007727 ORTHO05D009078 4.3e-08 62.4 66 47.0
Sabra01G0067800 Salix brachista HOM05D007727 ORTHO05D009078 4.3e-08 62.4 92 40.2
Haze_09065 Corylus avellana HOM05D007727 ORTHO05D009078 5.6e-08 62.0 88 43.2
Eucgr.D01744 Eucalyptus grandis HOM05D007727 ORTHO05D009078 5.6e-08 62.0 68 45.6
Nitab4.5_0002782g0050 Nicotiana tabacum HOM05D011491 ORTHO05D009078 5.6e-08 62.0 105 40.0
Oeu031672.1 Olea europaea HOM05D007727 ORTHO05D009078 5.6e-08 62.0 116 37.1
QL02p030393 Quercus lobata HOM05D007727 ORTHO05D009078 5.6e-08 62.0 66 47.0
QL02p030389 Quercus lobata HOM05D007727 ORTHO05D009078 9.5e-08 61.2 66 47.0
Sed0000706 Sechium edule HOM05D007727 ORTHO05D009078 9.5e-08 61.2 82 39.0
Gohir.D03G083800 Gossypium hirsutum HOM05D007727 ORTHO05D009078 1.6e-07 60.5 46 58.7
Gorai.003G078900 Gossypium raimondii HOM05D007727 ORTHO05D009078 1.6e-07 60.5 46 58.7
COL.COLO4_10705 Corchorus olitorius HOM05D007727 ORTHO05D009078 2.1e-07 60.1 114 33.3
Sabra01G0067700 Salix brachista HOM05D007727 ORTHO05D009078 2.1e-07 60.1 92 39.1
CiPaw.12G082800 Carya illinoinensis HOM05D007727 ORTHO05D009078 2.8e-07 59.7 102 41.2
Psat2g185360 Pisum sativum HOM05D007727 ORTHO05D009078 2.8e-07 59.7 138 34.8
Sed0007502 Sechium edule HOM05D007727 ORTHO05D009078 2.8e-07 59.7 86 38.4
TPR.G25603 Trifolium pratense HOM05D007727 ORTHO05D009078 3.6e-07 59.3 105 39.0
Cfa012003 Carpinus fangiana HOM05D007727 ORTHO05D009078 4.7e-07 58.9 87 41.4
Cfa012008 Carpinus fangiana HOM05D007727 ORTHO05D009078 4.7e-07 58.9 87 41.4
Gohir.A08G103450 Gossypium hirsutum HOM05D007727 ORTHO05D009078 8.0e-07 58.2 49 53.1
MSTRG.25675 Avicennia marina HOM05D007727 ORTHO05D009078 1.1e-06 57.8 99 36.4
CSS0019090 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 1.1e-06 57.8 124 35.5
Gohir.A02G100000 Gossypium hirsutum HOM05D007727 ORTHO05D009078 1.4e-06 57.4 46 56.5
Gohir.D08G130400 Gossypium hirsutum HOM05D007727 ORTHO05D009078 1.8e-06 57.0 45 55.6
Eucgr.D01742 Eucalyptus grandis HOM05D007727 ORTHO05D009078 2.3e-06 56.6 51 49.0
CiPaw.11G121100 Carya illinoinensis HOM05D007727 ORTHO05D009078 3.1e-06 56.2 50 52.0
Nitab4.5_0001210g0030 Nicotiana tabacum HOM05D011491 ORTHO05D009078 3.1e-06 56.2 104 39.4
Oeu031673.1 Olea europaea HOM05D007727 ORTHO05D009078 3.1e-06 56.2 100 40.0
CANSAT21G1217 Cannabis sativa HOM05D007727 ORTHO05D009078 6.8e-06 55.1 51 51.0
CiPaw.12G082600 Carya illinoinensis HOM05D007727 ORTHO05D009078 6.8e-06 55.1 102 39.2
Gorai.004G133300 Gossypium raimondii HOM05D007727 ORTHO05D009078 6.8e-06 55.1 45 53.3


User provided reference genes

Program Settings