Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1488.4 757 100.0
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 0.0e+00 1314.3 720 87.6
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1312.0 720 87.8
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1310.8 720 87.5
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1306.6 720 87.6
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 0.0e+00 1303.1 718 87.3
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1286.2 719 85.7
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1276.5 720 84.7
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 0.0e+00 1271.5 721 85.0
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1268.1 721 84.0
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1253.0 721 82.8
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1252.7 720 83.1
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1243.4 720 82.6
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1241.5 715 82.7
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 0.0e+00 1216.4 720 81.4
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 0.0e+00 1215.7 722 80.2
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 0.0e+00 1214.5 722 80.2
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 0.0e+00 1212.2 722 80.1
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1211.4 720 79.9
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1208.7 720 79.6
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1208.4 722 79.4
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1206.8 720 79.4
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 0.0e+00 1206.0 722 80.1
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 0.0e+00 1206.0 720 79.3
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 0.0e+00 1204.9 721 79.8
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1204.9 720 79.2
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1204.9 720 79.2
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1203.0 722 79.1
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1203.0 722 79.2
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1203.0 720 79.9
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 0.0e+00 1202.2 720 79.0
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 0.0e+00 1201.8 720 79.4
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1201.4 722 79.2
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 0.0e+00 1201.0 722 79.2
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 0.0e+00 1200.7 732 78.1
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1199.5 718 78.8
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1199.5 720 79.7
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 0.0e+00 1198.7 722 78.5
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 0.0e+00 1196.8 720 77.9
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 0.0e+00 1195.6 720 78.8
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 0.0e+00 1194.1 731 78.4
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1193.3 714 79.0
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1192.6 723 78.8
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 0.0e+00 1192.6 722 78.8
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 0.0e+00 1192.2 721 78.6
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 0.0e+00 1191.4 721 79.2
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 0.0e+00 1190.6 737 78.2
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1190.3 714 79.0
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1190.3 723 78.3
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 0.0e+00 1189.9 721 78.6
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 0.0e+00 1189.5 720 77.9
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 0.0e+00 1189.1 718 78.6
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 0.0e+00 1186.8 723 77.7
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1183.3 723 78.3
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1183.3 721 77.9
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 0.0e+00 1183.3 714 79.0
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1183.3 719 78.9
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 0.0e+00 1182.5 721 78.4
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 0.0e+00 1180.6 725 77.1
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 0.0e+00 1180.2 721 77.8
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 0.0e+00 1180.2 723 77.0
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 0.0e+00 1178.3 721 77.9
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1177.5 695 79.4
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1176.4 659 85.4
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 0.0e+00 1176.4 695 79.3
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1175.6 714 78.3
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 0.0e+00 1175.6 714 77.6
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1175.2 738 76.3
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 0.0e+00 1173.7 695 79.6
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 0.0e+00 1172.1 726 75.8
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1171.0 714 78.0
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 0.0e+00 1171.0 714 77.2
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 0.0e+00 1168.3 726 75.8
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1167.9 695 78.3
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 0.0e+00 1167.5 714 77.2
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 0.0e+00 1167.1 695 78.6
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 0.0e+00 1166.8 707 77.5
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 0.0e+00 1161.4 726 75.3
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1161.4 715 76.1
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 0.0e+00 1159.4 723 76.1
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1158.7 695 77.8
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1157.9 756 73.9
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1157.1 695 77.7
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1156.0 728 74.7
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 0.0e+00 1156.0 725 75.7
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 0.0e+00 1155.6 720 75.8
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1154.4 726 75.3
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1153.3 726 75.1
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1152.1 728 74.5
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1151.7 778 72.0
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1151.3 728 74.6
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1150.2 726 75.1
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 0.0e+00 1142.9 812 70.3
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1140.2 723 75.0
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1139.0 742 73.3
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1139.0 742 73.3
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1135.2 704 75.4
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1115.9 738 73.0
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1114.8 738 72.9
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1114.8 737 72.7
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1114.4 664 78.8
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 0.0e+00 1113.2 717 75.0
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 0.0e+00 1113.2 720 75.4
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1109.4 723 74.7
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 0.0e+00 1108.6 720 74.4
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1107.0 723 73.0
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1099.7 749 71.0
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 0.0e+00 1093.6 695 74.0
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 0.0e+00 1091.3 726 71.9
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 0.0e+00 1090.1 691 74.8
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 0.0e+00 1087.0 720 71.1
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 0.0e+00 1085.1 722 72.0
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 0.0e+00 1083.6 649 79.8
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 7.8e-311 1070.1 717 70.2
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 1.4e-307 1059.3 617 82.2
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 9.3e-304 1046.6 691 71.6
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 2.3e-302 1042.0 617 79.7
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 5.7e-301 1037.3 691 69.9
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 2.4e-291 1005.4 583 81.6
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 9.1e-291 1003.4 696 70.4
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 6.7e-286 987.3 720 67.8
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 1.4e-278 963.0 713 63.8
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 4.4e-277 958.0 723 63.3
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 1.3e-273 946.4 740 64.7
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 1.6e-271 939.5 691 63.5
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 4.7e-263 911.4 694 65.7
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 2.3e-257 892.5 691 60.1
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 3.4e-253 878.6 660 62.7
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 2.9e-252 875.5 612 67.2
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 5.9e-250 867.8 691 59.9
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 1.8e-238 829.7 528 74.2
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 1.1e-227 793.9 702 54.8
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 1.6e-226 790.0 494 77.5
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 5.1e-225 785.0 783 51.5
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 5.8e-213 745.0 503 71.8
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 5.3e-206 721.8 706 52.3
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 3.2e-203 712.6 418 81.1
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.5e-179 633.3 426 71.8
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 1.2e-154 551.2 378 68.0
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 9.2e-142 508.4 300 81.0
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 4.6e-133 479.6 313 73.2
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 1.1e-131 474.9 348 71.6
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 2.8e-130 470.3 312 73.4
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 3.3e-123 446.8 273 76.2
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 3.7e-119 433.3 309 68.3
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.5e-107 394.0 280 68.2
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 4.6e-101 373.2 313 59.7
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 5.8e-96 356.3 742 35.8
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 4.3e-91 340.1 183 80.3
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 7.6e-88 329.3 206 75.7
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 8.2e-74 282.7 354 49.4
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.4e-65 255.4 168 66.1
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 2.1e-61 241.5 222 55.0
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 1.1e-59 235.7 197 58.4
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 6.5e-55 219.9 183 59.6
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 7.7e-48 196.4 219 45.2
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 8.5e-39 166.4 101 70.3
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 3.2e-38 164.5 183 49.7
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 1.6e-37 162.2 101 70.3
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 1.5e-30 139.0 171 47.4
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 7.5e-27 126.7 80 67.5
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 1.3e-23 115.9 139 43.9
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 1.5e-22 112.5 79 64.6
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 5.6e-22 110.5 161 44.7
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 9.5e-22 109.8 112 52.7
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 8.9e-20 103.2 58 79.3
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 2.2e-18 98.6 149 38.9
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 6.4e-18 97.1 149 38.3
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 1.1e-17 96.3 145 42.1
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 2.4e-17 95.1 111 47.7
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 6.0e-16 90.5 127 40.9
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 2.5e-14 85.1 46 78.3
Medtr3g108170 Medicago truncatula HOM05D003895 ORTHO05D260611 2.5e-14 85.1 281 31.7
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 7.5e-11 73.6 49 75.5
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 7.1e-09 67.0 66 50.0
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 7.1e-09 67.0 66 50.0
Atru.chr9.1960 Acer truncatum HOM05D003895 ORTHO05D004723 6.0e-08 63.9 47 70.2
Glyma.17G110701 Glycine max HOM05D003895 ORTHO05D004723 3.9e-07 61.2 34 82.4
Nitab4.5_0000050g0220 Nicotiana tabacum HOM05D003895 ORTHO05D285100 1.9e-06 58.9 43 74.4
PGSC0003DMG400033059 Solanum tuberosum HOM05D003895 ORTHO05D004723 1.9e-06 58.9 37 70.3
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 9.5e-06 56.6 37 73.0


User provided reference genes

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