Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 4.8e-41 170.6 80 100.0
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 1.1e-32 142.9 81 81.5
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 3.4e-31 137.9 81 80.2
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 2.2e-30 135.2 80 76.2
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 8.5e-30 133.3 80 70.0
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 2.1e-28 128.6 78 73.1
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 2.7e-28 128.3 79 75.9
TPR.G34134 Trifolium pratense HOM05D007628 ORTHO05D007342 6.1e-28 127.1 81 71.6
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 4.3e-26 120.9 80 68.8
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 8.2e-25 116.7 77 70.1
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 9.1e-24 113.2 77 70.1
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 1.2e-23 112.8 77 71.4
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 1.3e-22 109.4 75 66.7
arahy.Tifrunner.gnm1.ann1.I9AMSX Arachis hypogaea HOM05D007628 ORTHO05D007342 5.5e-21 104.0 75 65.3
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.2e-20 102.8 77 61.0
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 1.6e-20 102.4 77 61.0
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.6e-20 102.4 77 61.0
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 2.7e-20 101.7 75 64.0
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 8.8e-19 96.7 75 58.7
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 8.8e-19 96.7 75 58.7
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 7.4e-18 93.6 67 67.2
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 7.4e-18 93.6 74 60.8
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 9.7e-18 93.2 80 62.5
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 9.7e-18 93.2 73 60.3
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 1.7e-17 92.4 77 55.8
FAN14G5279 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.2e-17 92.0 78 55.1
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 2.8e-17 91.7 77 55.8
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 3.7e-17 91.3 79 60.8
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 3.7e-17 91.3 74 62.2
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 8.2e-17 90.1 74 56.8
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 1.1e-16 89.7 64 64.1
FvH4_5g32170 Fragaria vesca HOM05D007628 ORTHO05D007342 1.4e-16 89.4 71 56.3
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.4e-16 88.6 74 56.8
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 2.6e-15 85.1 55 67.3
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 3.5e-15 84.7 65 64.6
Cc10_g10210 Coffea canephora HOM05D007628 ORTHO05D007342 5.9e-15 84.0 77 48.1
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 7.7e-15 83.6 74 54.1
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 1.7e-14 82.4 73 53.4
AUR62022642 Chenopodium quinoa HOM05D007628 ORTHO05D007342 2.2e-14 82.0 82 54.9
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 2.2e-14 82.0 74 54.1
AUR62004619 Chenopodium quinoa HOM05D007628 ORTHO05D007342 2.9e-14 81.6 82 53.7
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 3.8e-14 81.3 72 48.6
Cc00_g22140 Coffea canephora HOM05D007628 ORTHO05D007342 3.8e-14 81.3 73 47.9
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 3.8e-14 81.3 78 48.7
TPR.G34171 Trifolium pratense HOM05D007628 ORTHO05D007342 6.5e-14 80.5 69 58.0
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 8.5e-14 80.1 72 50.0
Nitab4.5_0005382g0020 Nicotiana tabacum HOM05D008200 ORTHO05D007342 8.5e-14 80.1 76 51.3
Haze_21294 Corylus avellana HOM05D007628 ORTHO05D007342 2.5e-13 78.6 80 48.8
Peaxi162Scf00071g00049 Petunia axillaris HOM05D008200 ORTHO05D007342 4.2e-13 77.8 74 48.6
Peaxi162Scf00071g00435 Petunia axillaris HOM05D008200 ORTHO05D010849 9.4e-13 76.6 61 54.1
Ah.09g230940 Amaranthus hybridus HOM05D007628 ORTHO05D007342 1.2e-12 76.3 63 58.7
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.6e-12 75.9 75 48.0
Peaxi162Scf00391g00074 Petunia axillaris HOM05D008200 ORTHO05D007342 2.7e-12 75.1 66 53.0
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 2.7e-12 75.1 66 56.1
QL02p025976 Quercus lobata HOM05D007628 ORTHO05D007342 2.7e-12 75.1 66 57.6
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 2.7e-12 75.1 66 56.1
QL93p0163_0044 Quercus lobata HOM05D007628 ORTHO05D007342 2.7e-12 75.1 66 57.6
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 3.6e-12 74.7 80 42.5
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 3.6e-12 74.7 54 63.0
PGSC0003DMG400002110 Solanum tuberosum HOM05D008200 ORTHO05D007342 6.1e-12 73.9 76 48.7
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 8.0e-12 73.6 76 47.4
GSVIVG01023245001 Vitis vinifera HOM05D007628 ORTHO05D007342 8.0e-12 73.6 73 46.6
CAN.G508.19 Capsicum annuum HOM05D008200 ORTHO05D007342 1.0e-11 73.2 78 44.9
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 1.0e-11 73.2 81 50.6
Solyc03g031895.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 1.0e-11 73.2 75 46.7
PGSC0003DMG400024075 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.8e-11 72.4 75 45.3
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 3.0e-11 71.6 72 45.8
CAN.G201.40 Capsicum annuum HOM05D008200 ORTHO05D007342 3.0e-11 71.6 76 47.4
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 4.0e-11 71.2 71 45.1
CiPaw.08G002000 Carya illinoinensis HOM05D007628 ORTHO05D007342 5.2e-11 70.9 88 47.7
Lalb_Chr01g0016231 Lupinus albus HOM05D007628 ORTHO05D007342 6.7e-11 70.5 55 60.0
Peaxi162Scf00391g00730 Petunia axillaris HOM05D008200 ORTHO05D007342 1.1e-10 69.7 74 44.6
EL10Ac1g00115 Beta vulgaris HOM05D007628 ORTHO05D007342 1.5e-10 69.3 80 47.5
CAN.G201.41 Capsicum annuum HOM05D008200 ORTHO05D007342 2.0e-10 68.9 68 48.5
Hund27101 Selenicereus undatus HOM05D007628 ORTHO05D007342 4.4e-10 67.8 76 44.7
Cc10_g10200 Coffea canephora HOM05D007628 ORTHO05D007342 5.7e-10 67.4 70 42.9
Peaxi162Scf00391g00729 Petunia axillaris HOM05D008200 ORTHO05D007342 9.7e-10 66.6 76 46.1
Nitab4.5_0006133g0030 Nicotiana tabacum HOM05D008200 ORTHO05D007342 1.7e-09 65.9 77 39.0
CSS0008166 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 2.2e-09 65.5 44 61.4
Peaxi162Scf00071g00425 Petunia axillaris HOM05D008200 ORTHO05D007342 2.8e-09 65.1 78 44.9
Solyc06g061210.4 Solanum lycopersicum HOM05D001063 ORTHO05D000986 2.8e-09 65.1 74 44.6
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 4.8e-09 64.3 70 50.0
Peaxi162Scf00268g00024 Petunia axillaris HOM05D008200 ORTHO05D007342 4.8e-09 64.3 77 36.4
Potri.019G080600 Populus trichocarpa HOM05D007628 ORTHO05D007342 4.8e-09 64.3 64 46.9
Manes.18G104000 Manihot esculenta HOM05D007628 ORTHO05D007342 8.2e-09 63.5 46 58.7
SHI05836 Sapria himalayana HOM05D007628 ORTHO05D007342 8.2e-09 63.5 68 45.6
THA.LOC104800123 Tarenaya hassleriana HOM05D007628 ORTHO05D007342 8.2e-09 63.5 77 42.9
unitig_8.g5066 Utricularia gibba HOM05D007628 ORTHO05D007342 1.1e-08 63.2 51 49.0
unitig_578.g16588 Utricularia gibba HOM05D007628 ORTHO05D007342 1.4e-08 62.8 62 45.2
Cc10_g10180 Coffea canephora HOM05D013878 ORTHO05D007342 1.8e-08 62.4 70 42.9
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 1.8e-08 62.4 73 43.8
Solyc06g065073.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 1.8e-08 62.4 78 38.5
Sopen06g023600 Solanum pennellii HOM05D008200 ORTHO05D010849 1.8e-08 62.4 78 38.5
Zm00001eb127310 Zea mays HOM05D007628 ORTHO05D007342 1.8e-08 62.4 57 50.9
Ah.06g183420 Amaranthus hybridus HOM05D007628 ORTHO05D007342 2.4e-08 62.0 73 43.8
Aa31LG4G8570 Aethionema arabicum HOM05D007628 ORTHO05D007342 3.1e-08 61.6 61 52.5
PGSC0003DMG400031328 Solanum tuberosum HOM05D008200 ORTHO05D007342 4.1e-08 61.2 78 38.5
Manes.18G103800 Manihot esculenta HOM05D007628 ORTHO05D007342 5.3e-08 60.8 65 46.2
Duzib177G0741 Durio zibethinus HOM05D007628 ORTHO05D007342 7.0e-08 60.5 68 44.1
CARHR064880 Cardamine hirsuta HOM05D007628 ORTHO05D007342 9.1e-08 60.1 73 49.3
BcaB05g24703 Brassica carinata HOM05D007628 ORTHO05D007342 1.2e-07 59.7 74 47.3
SalBow7G0776 Salvia bowleyana HOM05D007628 ORTHO05D007342 1.2e-07 59.7 43 60.5
PGSC0003DMG400015290 Solanum tuberosum HOM05D008200 ORTHO05D010849 1.2e-07 59.7 53 52.8
Rhsim06G0114400 Rhododendron simsii HOM05D007628 ORTHO05D007342 1.6e-07 59.3 72 43.1
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 1.6e-07 59.3 64 45.3
AT1G72060 Arabidopsis thaliana HOM05D007628 ORTHO05D007342 3.5e-07 58.2 76 46.1
DCAR_001460 Daucus carota HOM05D001035 ORTHO05D001045 3.5e-07 58.2 51 52.9
PGSC0003DMG400004548 Solanum tuberosum HOM05D008200 ORTHO05D010849 3.5e-07 58.2 53 52.8
Solyc03g020050.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 4.5e-07 57.8 53 50.9
Sopen03g029570 Solanum pennellii HOM05D008200 ORTHO05D010849 4.5e-07 57.8 53 50.9
unitig_8.g5068 Utricularia gibba HOM05D007628 ORTHO05D007342 4.5e-07 57.8 49 44.9
BcaC03g15330 Brassica carinata HOM05D007628 ORTHO05D007342 5.9e-07 57.4 74 45.9
C02p29350 Brassica napus HOM05D007628 ORTHO05D007342 5.9e-07 57.4 74 45.9
BolC2t08986H Brassica oleracea HOM05D007628 ORTHO05D007342 5.9e-07 57.4 74 45.9
Carub.0002s1884 Capsella rubella HOM05D007628 ORTHO05D007342 5.9e-07 57.4 79 45.6
Sc16g0006710 Simmondsia chinensis HOM05D007628 ORTHO05D007342 5.9e-07 57.4 78 39.7
BraA02t06812Z Brassica rapa HOM05D007628 ORTHO05D007342 7.7e-07 57.0 74 45.9
CSS0046525 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 7.7e-07 57.0 52 48.1
unitig_578.g16589 Utricularia gibba HOM05D007628 ORTHO05D007342 1.3e-06 56.2 49 46.9
Rhsim06G0114500 Rhododendron simsii HOM05D007628 ORTHO05D007342 2.2e-06 55.5 71 40.8
CAN.G861.41 Capsicum annuum HOM05D008200 ORTHO05D010849 2.9e-06 55.1 55 41.8
Nitab4.5_0014015g0010 Nicotiana tabacum HOM05D008200 ORTHO05D010849 5.0e-06 54.3 74 37.8


User provided reference genes

Program Settings