Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 2.2e-44 181.8 86 100.0
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 2.0e-32 142.1 81 79.0
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 2.0e-32 142.1 81 81.5
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 2.0e-29 132.1 81 75.3
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 7.7e-29 130.2 79 73.4
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 1.0e-25 119.8 79 70.9
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 8.8e-25 116.7 81 70.4
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 8.8e-25 116.7 79 67.1
TPR.G34134 Trifolium pratense HOM05D007628 ORTHO05D007342 1.3e-23 112.8 85 61.2
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 2.8e-23 111.7 76 63.2
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 1.3e-20 102.8 78 62.8
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 2.2e-20 102.1 78 66.7
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 7.2e-19 97.1 76 61.8
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 9.4e-19 96.7 76 60.5
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 9.4e-19 96.7 76 59.2
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 9.4e-19 96.7 76 59.2
arahy.Tifrunner.gnm1.ann1.I9AMSX Arachis hypogaea HOM05D007628 ORTHO05D007342 6.1e-18 94.0 76 59.2
FvH4_5g32170 Fragaria vesca HOM05D007628 ORTHO05D007342 4.0e-17 91.3 72 58.3
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 8.8e-17 90.1 76 55.3
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 1.2e-16 89.7 76 55.3
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.2e-16 89.7 76 55.3
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 1.3e-15 86.3 71 56.3
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 4.8e-15 84.3 81 55.6
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 6.3e-15 84.0 66 62.1
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 6.3e-15 84.0 73 58.9
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 1.1e-14 83.2 76 53.9
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 1.8e-14 82.4 80 53.8
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 1.8e-14 82.4 73 58.9
AUR62022642 Chenopodium quinoa HOM05D007628 ORTHO05D007342 3.1e-14 81.6 76 56.6
AUR62004619 Chenopodium quinoa HOM05D007628 ORTHO05D007342 4.1e-14 81.3 76 55.3
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 4.1e-14 81.3 75 54.7
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 4.1e-14 81.3 72 55.6
FAN14G5279 Fragaria x ananassa HOM05D007628 ORTHO05D007342 7.0e-14 80.5 77 51.9
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.0e-13 79.0 75 53.3
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 3.5e-13 78.2 73 54.8
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 3.5e-13 78.2 76 50.0
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 4.5e-13 77.8 75 56.0
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 1.0e-12 76.6 77 48.1
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 1.3e-12 76.3 76 48.7
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 1.7e-12 75.9 81 43.2
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 2.9e-12 75.1 73 50.7
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 2.9e-12 75.1 67 55.2
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 2.9e-12 75.1 67 55.2
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 5.0e-12 74.3 62 56.5
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 5.0e-12 74.3 66 57.6
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 6.6e-12 73.9 73 52.1
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 6.6e-12 73.9 50 60.0
GSVIVG01023245001 Vitis vinifera HOM05D007628 ORTHO05D007342 8.6e-12 73.6 72 47.2
EL10Ac1g00115 Beta vulgaris HOM05D007628 ORTHO05D007342 1.1e-11 73.2 80 47.5
Cc10_g10210 Coffea canephora HOM05D007628 ORTHO05D007342 1.1e-11 73.2 74 41.9
Haze_21294 Corylus avellana HOM05D007628 ORTHO05D007342 2.5e-11 72.0 79 50.6
TPR.G34171 Trifolium pratense HOM05D007628 ORTHO05D007342 2.5e-11 72.0 69 50.7
QL02p025976 Quercus lobata HOM05D007628 ORTHO05D007342 5.5e-11 70.9 67 52.2
QL93p0163_0044 Quercus lobata HOM05D007628 ORTHO05D007342 5.5e-11 70.9 67 52.2
PGSC0003DMG400002110 Solanum tuberosum HOM05D008200 ORTHO05D007342 5.5e-11 70.9 76 46.1
Nitab4.5_0005382g0020 Nicotiana tabacum HOM05D008200 ORTHO05D007342 9.5e-11 70.1 77 48.1
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 9.5e-11 70.1 72 47.2
Hund27101 Selenicereus undatus HOM05D007628 ORTHO05D007342 9.5e-11 70.1 84 50.0
Cc00_g22140 Coffea canephora HOM05D007628 ORTHO05D007342 1.2e-10 69.7 74 44.6
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 2.1e-10 68.9 51 58.8
Ah.09g230940 Amaranthus hybridus HOM05D007628 ORTHO05D007342 2.8e-10 68.6 64 54.7
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 2.8e-10 68.6 67 53.7
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 2.8e-10 68.6 74 48.6
Cc10_g10200 Coffea canephora HOM05D007628 ORTHO05D007342 6.1e-10 67.4 71 45.1
Peaxi162Scf00071g00049 Petunia axillaris HOM05D008200 ORTHO05D007342 1.0e-09 66.6 75 44.0
Peaxi162Scf00071g00425 Petunia axillaris HOM05D008200 ORTHO05D007342 1.0e-09 66.6 78 43.6
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.4e-09 66.2 76 44.7
Cc10_g10180 Coffea canephora HOM05D013878 ORTHO05D007342 1.8e-09 65.9 71 45.1
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 1.8e-09 65.9 77 42.9
unitig_8.g5066 Utricularia gibba HOM05D007628 ORTHO05D007342 1.8e-09 65.9 73 42.5
CAN.G201.41 Capsicum annuum HOM05D008200 ORTHO05D007342 2.3e-09 65.5 65 47.7
CSS0008166 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 6.8e-09 63.9 43 65.1
Solyc06g061210.4 Solanum lycopersicum HOM05D001063 ORTHO05D000986 6.8e-09 63.9 74 44.6
Solyc03g031895.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 8.9e-09 63.5 76 43.4
CARHR064880 Cardamine hirsuta HOM05D007628 ORTHO05D007342 1.2e-08 63.2 72 44.4
Peaxi162Scf00071g00435 Petunia axillaris HOM05D008200 ORTHO05D010849 1.5e-08 62.8 78 42.3
PGSC0003DMG400024075 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.5e-08 62.8 76 42.1
Zm00001eb127310 Zea mays HOM05D007628 ORTHO05D007342 1.5e-08 62.8 64 45.3
Ah.06g183420 Amaranthus hybridus HOM05D007628 ORTHO05D007342 2.0e-08 62.4 79 38.0
Potri.019G080600 Populus trichocarpa HOM05D007628 ORTHO05D007342 2.0e-08 62.4 68 47.1
CiPaw.08G002000 Carya illinoinensis HOM05D007628 ORTHO05D007342 2.6e-08 62.0 80 46.2
unitig_8.g5068 Utricularia gibba HOM05D007628 ORTHO05D007342 2.6e-08 62.0 51 52.9
Manes.18G103800 Manihot esculenta HOM05D007628 ORTHO05D007342 3.4e-08 61.6 45 57.8
SHI05836 Sapria himalayana HOM05D007628 ORTHO05D007342 4.4e-08 61.2 60 41.7
Manes.18G104000 Manihot esculenta HOM05D007628 ORTHO05D007342 5.7e-08 60.8 45 55.6
THA.LOC104800123 Tarenaya hassleriana HOM05D007628 ORTHO05D007342 5.7e-08 60.8 77 36.4
Carub.0002s1884 Capsella rubella HOM05D007628 ORTHO05D007342 7.5e-08 60.5 80 38.8
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 7.5e-08 60.5 65 44.6
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 7.5e-08 60.5 73 41.1
Lalb_Chr01g0016231 Lupinus albus HOM05D007628 ORTHO05D007342 9.8e-08 60.1 60 48.3
BcaB05g24703 Brassica carinata HOM05D007628 ORTHO05D007342 1.7e-07 59.3 77 45.5
Aa31LG4G8570 Aethionema arabicum HOM05D007628 ORTHO05D007342 3.7e-07 58.2 64 50.0
AT1G72060 Arabidopsis thaliana HOM05D007628 ORTHO05D007342 4.9e-07 57.8 71 40.8
CSS0046525 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 4.9e-07 57.8 43 58.1
Peaxi162Scf00391g00730 Petunia axillaris HOM05D008200 ORTHO05D007342 1.1e-06 56.6 75 41.3
unitig_578.g16588 Utricularia gibba HOM05D007628 ORTHO05D007342 1.1e-06 56.6 53 49.1
Peaxi162Scf00391g00729 Petunia axillaris HOM05D008200 ORTHO05D007342 1.4e-06 56.2 76 39.5
BcaC03g15330 Brassica carinata HOM05D007628 ORTHO05D007342 3.1e-06 55.1 48 52.1
C02p29350 Brassica napus HOM05D007628 ORTHO05D007342 3.1e-06 55.1 48 52.1
BolC2t08986H Brassica oleracea HOM05D007628 ORTHO05D007342 3.1e-06 55.1 48 52.1
SalBow7G0776 Salvia bowleyana HOM05D007628 ORTHO05D007342 3.1e-06 55.1 52 50.0
BraA02t06812Z Brassica rapa HOM05D007628 ORTHO05D007342 4.1e-06 54.7 48 52.1
Duzib177G0741 Durio zibethinus HOM05D007628 ORTHO05D007342 4.1e-06 54.7 67 40.3
Rhsim06G0114400 Rhododendron simsii HOM05D007628 ORTHO05D007342 4.1e-06 54.7 73 42.5
Sc16g0006710 Simmondsia chinensis HOM05D007628 ORTHO05D007342 5.4e-06 54.3 79 36.7
unitig_578.g16589 Utricularia gibba HOM05D007628 ORTHO05D007342 5.4e-06 54.3 56 42.9
DCAR_001460 Daucus carota HOM05D001035 ORTHO05D001045 7.0e-06 53.9 50 48.0


User provided reference genes

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