Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3409 Trifolium pratense HOM05D003086 ORTHO05D003347 2.1e-31 138.7 85 100.0
Psat7g022720 Pisum sativum HOM05D003086 ORTHO05D003347 1.1e-16 89.7 90 68.9
Medtr8g099965 Medicago truncatula HOM05D003086 ORTHO05D003347 4.8e-15 84.3 90 68.9
Phvul.002G328908 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 1.2e-13 79.7 91 69.2
Lalb_Chr05g0223911 Lupinus albus HOM05D003086 ORTHO05D003347 5.0e-12 74.3 78 75.6
Lj4g0018385 Lotus japonicus HOM05D003086 ORTHO05D003347 3.2e-11 71.6 90 64.4
QL02p028382 Quercus lobata HOM05D003086 ORTHO05D003347 3.2e-11 71.6 87 54.0
Glyma.05G219700 Glycine max HOM05D003086 ORTHO05D003347 9.4e-11 70.1 92 65.2
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 9.4e-11 70.1 84 50.0
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 6.1e-10 67.4 50 66.0
Glyma.08G026000 Glycine max HOM05D003086 ORTHO05D003347 1.0e-09 66.6 49 75.5
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 3.9e-09 64.7 49 65.3
Lalb_Chr23g0271671 Lupinus albus HOM05D003086 ORTHO05D003347 8.8e-09 63.5 86 39.5
FAN18G2695 Fragaria x ananassa HOM05D003086 ORTHO05D003347 1.1e-08 63.2 78 48.7
Manes.01G053400 Manihot esculenta HOM05D003086 ORTHO05D003347 1.9e-08 62.4 44 70.5
Sabra01G0063400 Salix brachista HOM05D003086 ORTHO05D003347 1.9e-08 62.4 77 48.1
Manes.02G005600 Manihot esculenta HOM05D003086 ORTHO05D003347 2.5e-08 62.0 44 70.5
Potri.001G087200 Populus trichocarpa HOM05D003086 ORTHO05D003347 2.5e-08 62.0 78 48.7
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 2.5e-08 62.0 91 49.5
MD06G1113400 Malus domestica HOM05D003086 ORTHO05D003347 3.3e-08 61.6 92 48.9
FAN13G3255 Fragaria x ananassa HOM05D003086 ORTHO05D003347 4.3e-08 61.2 79 53.2
FAN08G3604 Fragaria x ananassa HOM05D003086 ORTHO05D003347 5.7e-08 60.8 37 78.4
Sed0015662 Sechium edule HOM05D003086 ORTHO05D003347 7.4e-08 60.5 38 71.1
Lalb_Chr09g0332101 Lupinus albus HOM05D003086 ORTHO05D003347 9.7e-08 60.1 83 63.9
Gohir.A08G111400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.7e-07 59.3 37 70.3
Gohir.D08G124400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.7e-07 59.3 37 70.3
Gorai.004G131100 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.7e-07 59.3 37 70.3
CiPaw.11G115700 Carya illinoinensis HOM05D003086 ORTHO05D003347 2.8e-07 58.5 49 61.2
FvH4_5g11470 Fragaria vesca HOM05D003086 ORTHO05D003347 2.8e-07 58.5 78 47.4
MELO3C005750.2 Cucumis melo HOM05D003086 ORTHO05D003347 3.7e-07 58.2 35 77.1
TWI60G1451 Tripterygium wilfordii HOM05D003086 ORTHO05D003347 3.7e-07 58.2 47 61.7
ClCG01G001890 Citrullus lanatus HOM05D003086 ORTHO05D003347 4.8e-07 57.8 35 74.3
FAN04G2505 Fragaria x ananassa HOM05D003086 ORTHO05D003347 6.3e-07 57.4 78 48.7
RcHm_v2.0_Chr7g0186341 Rosa chinensis HOM05D003086 ORTHO05D003347 6.3e-07 57.4 78 53.8
Gohir.A12G248300 Gossypium hirsutum HOM05D003086 ORTHO05D003347 8.2e-07 57.0 89 40.4
MD14G1134500 Malus domestica HOM05D003086 ORTHO05D003347 8.2e-07 57.0 90 52.2
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 8.2e-07 57.0 37 67.6
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 8.2e-07 57.0 49 55.1
CANSAT21G1677 Cannabis sativa HOM05D003086 ORTHO05D003347 1.1e-06 56.6 30 90.0
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 1.1e-06 56.6 49 53.1
Thecc.03G202500 Theobroma cacao HOM05D003086 ORTHO05D003347 1.1e-06 56.6 85 40.0
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 1.4e-06 56.2 37 67.6
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 1.8e-06 55.8 88 40.9
Duzib084G0307 Durio zibethinus HOM05D003086 ORTHO05D003347 1.8e-06 55.8 42 57.1
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 2.4e-06 55.5 50 56.0
Gohir.D12G249000 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.4e-06 55.5 89 39.3
Gorai.008G267200 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.4e-06 55.5 89 39.3
BcaC05g27913 Brassica carinata HOM05D003086 ORTHO05D003347 3.1e-06 55.1 32 78.1
C05p39210 Brassica napus HOM05D003086 ORTHO05D003347 3.1e-06 55.1 32 78.1
C09p35950 Brassica napus HOM05D003086 ORTHO05D003347 3.1e-06 55.1 32 78.1
BolC5t32654H Brassica oleracea HOM05D003086 ORTHO05D003347 3.1e-06 55.1 32 78.1
BolC9t56428H Brassica oleracea HOM05D003086 ORTHO05D003347 3.1e-06 55.1 32 78.1
CSS0003230 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 3.1e-06 55.1 48 56.2
CSS0024306 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 3.1e-06 55.1 48 56.2
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 4.1e-06 54.7 57 52.6
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 4.1e-06 54.7 82 40.2
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 4.1e-06 54.7 82 40.2
CsaV3_5G002030 Cucumis sativus L. HOM05D003086 ORTHO05D003347 4.1e-06 54.7 35 71.4
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 4.1e-06 54.7 51 52.9
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 5.3e-06 54.3 50 54.0
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 5.3e-06 54.3 38 60.5
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 5.3e-06 54.3 74 40.5
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 6.9e-06 53.9 38 60.5
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 6.9e-06 53.9 36 61.1
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 6.9e-06 53.9 37 62.2
HPP92_013003 Vanilla planifolia HOM05D003086 ORTHO05D003347 9.1e-06 53.5 38 57.9


User provided reference genes

Program Settings