Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3408 Trifolium pratense HOM05D007339 ORTHO05D009302 6.9e-116 420.6 209 100.0
Psat7g028320 Pisum sativum HOM05D007339 ORTHO05D009302 4.4e-94 348.2 188 92.0
Medtr8g099160 Medicago truncatula HOM05D007339 ORTHO05D009302 4.7e-88 328.2 185 91.4
Ca_17504_v3 Cicer arietinum L. HOM05D007339 ORTHO05D009302 7.0e-84 314.3 182 86.8
Lj4g0000586 Lotus japonicus HOM05D007339 ORTHO05D009302 8.3e-77 290.8 190 77.9
LjContig00001g0019220 Lotus japonicus HOM05D007339 ORTHO05D009302 8.3e-77 290.8 190 77.9
LjContig00001g0022561 Lotus japonicus HOM05D007339 ORTHO05D009302 8.3e-77 290.8 190 77.9
VMungo0251G0376 Vigna mungo HOM05D007339 ORTHO05D009302 8.3e-77 290.8 189 77.8
Lalb_Chr05g0224341 Lupinus albus HOM05D007339 ORTHO05D009302 4.1e-76 288.5 187 76.5
Phvul.002G295000 Phaseolus vulgaris HOM05D007339 ORTHO05D009302 9.2e-76 287.3 189 77.2
Glyma.05G213600 Glycine max HOM05D007339 ORTHO05D009302 1.0e-74 283.9 187 75.9
arahy.Tifrunner.gnm1.ann1.3U28WJ Arachis hypogaea HOM05D007339 ORTHO05D009302 2.0e-70 269.6 182 73.6
arahy.Tifrunner.gnm1.ann1.XUAZ2L Arachis hypogaea HOM05D007339 ORTHO05D009302 3.4e-70 268.9 182 73.6
arahy.Tifrunner.gnm1.ann1.CS5PRD Arachis hypogaea HOM05D007339 ORTHO05D009302 1.3e-69 266.9 182 73.1
TAR629G0408 Trochodendron aralioides HOM05D007339 ORTHO05D009302 1.4e-68 263.5 187 70.1
Manes.02G014000 Manihot esculenta HOM05D007339 ORTHO05D009302 2.4e-68 262.7 187 67.9
Cfa012282 Carpinus fangiana HOM05D007339 ORTHO05D009302 9.2e-68 260.8 187 68.4
Cc08_g15580 Coffea canephora HOM05D007339 ORTHO05D009302 2.7e-67 259.2 183 68.9
CiPaw.11G126100 Carya illinoinensis HOM05D007339 ORTHO05D009302 3.0e-66 255.8 187 65.8
Gohir.D12G235400 Gossypium hirsutum HOM05D007339 ORTHO05D009302 6.6e-66 254.6 182 67.6
Gorai.008G251600 Gossypium raimondii HOM05D007339 ORTHO05D009302 6.6e-66 254.6 182 67.6
COL.COLO4_21749 Corchorus olitorius HOM05D007339 ORTHO05D009302 8.6e-66 254.2 186 67.2
QL02p032076 Quercus lobata HOM05D007339 ORTHO05D009302 8.6e-66 254.2 187 66.3
Duzib068G0257 Durio zibethinus HOM05D007339 ORTHO05D009302 1.1e-65 253.8 186 66.1
CSS0003086 Camellia sinensis var. sinensis HOM05D007339 ORTHO05D009302 1.5e-65 253.4 187 64.2
Oeu008834.1 Olea europaea HOM05D007339 ORTHO05D009302 4.3e-65 251.9 187 63.1
Potri.003G135200 Populus trichocarpa HOM05D007339 ORTHO05D009302 4.3e-65 251.9 181 68.0
TWI60G1048 Tripterygium wilfordii HOM05D007339 ORTHO05D009302 4.3e-65 251.9 177 68.9
Gohir.A12G231900 Gossypium hirsutum HOM05D007339 ORTHO05D009302 7.3e-65 251.1 182 66.5
Actinidia01410 Actinidia chinensis HOM05D007339 ORTHO05D009302 9.5e-65 250.8 188 66.0
QL02p032031 Quercus lobata HOM05D007339 ORTHO05D009302 2.1e-64 249.6 187 65.2
Dinv37563 Davidia involucrata HOM05D007339 ORTHO05D009302 2.8e-64 249.2 187 63.6
RcHm_v2.0_Chr7g0195891 Rosa chinensis HOM05D007339 ORTHO05D009302 2.8e-64 249.2 187 63.1
Lj2A174T87 Lonicera japonica HOM05D007339 ORTHO05D009302 3.6e-64 248.8 182 63.7
Prupe.5G112000 Prunus persica HOM05D007339 ORTHO05D009302 4.7e-64 248.4 182 64.8
MELO3C008161.2 Cucumis melo HOM05D007339 ORTHO05D009302 8.0e-64 247.7 182 64.3
Sabra03G0097300 Salix brachista HOM05D007339 ORTHO05D009302 1.1e-63 247.3 186 65.1
ClCG11G007690 Citrullus lanatus HOM05D007339 ORTHO05D009302 1.8e-63 246.5 182 65.4
Eucgr.D01785 Eucalyptus grandis HOM05D007339 ORTHO05D009302 1.8e-63 246.5 182 65.4
FAN08G0386 Fragaria x ananassa HOM05D007339 ORTHO05D009302 4.0e-63 245.4 182 65.9
Nn1g08390 Nelumbo nucifera HOM05D007339 ORTHO05D009302 1.2e-62 243.8 182 63.2
CsaV3_2G033870 Cucumis sativus L. HOM05D007339 ORTHO05D009302 2.6e-62 242.7 182 63.7
FAN04G0801 Fragaria x ananassa HOM05D007339 ORTHO05D009302 3.4e-62 242.3 182 65.4
MD14G1117300 Malus domestica HOM05D007339 ORTHO05D009302 9.8e-62 240.7 177 65.5
Thecc.03G290600 Theobroma cacao HOM05D007339 ORTHO05D009302 9.8e-62 240.7 182 64.3
Cpa.g.c31793 Carica papaya HOM05D007339 ORTHO05D009302 1.7e-61 240.0 177 64.4
Migut.E01224 Erythranthe guttata HOM05D007339 ORTHO05D009302 1.7e-61 240.0 192 59.9
GSVIVG01019463001 Vitis vinifera HOM05D007339 ORTHO05D009302 2.2e-61 239.6 177 65.0
AUR62010789 Chenopodium quinoa HOM05D007339 ORTHO05D009302 3.7e-61 238.8 178 65.7
CANSAT21G2628 Cannabis sativa HOM05D007339 ORTHO05D009302 4.9e-61 238.4 179 64.8
DCAR_027743 Daucus carota HOM05D007339 ORTHO05D009302 8.3e-61 237.7 177 65.5
vmacro11423 Vaccinium macrocarpon HOM05D007339 ORTHO05D009302 8.3e-61 237.7 182 62.6
SGA_v2.0_scaffold111G31453 Striga asiatica HOM05D007339 ORTHO05D009302 1.1e-60 237.3 186 61.3
CAN.G868.7 Capsicum annuum HOM05D007339 ORTHO05D009302 1.4e-60 236.9 197 57.9
AUR62019785 Chenopodium quinoa HOM05D007339 ORTHO05D009302 1.9e-60 236.5 178 65.2
EL10Ac5g12862 Beta vulgaris HOM05D007339 ORTHO05D009302 4.1e-60 235.3 177 63.8
Eucgr.D01783 Eucalyptus grandis HOM05D007339 ORTHO05D009302 1.6e-59 233.4 177 63.3
Nitab4.5_0002381g0050 Nicotiana tabacum HOM05D007339 ORTHO05D009302 1.6e-59 233.4 198 59.1
SalBow1G6752 Salvia bowleyana HOM05D007339 ORTHO05D009302 4.6e-59 231.9 182 59.9
Peaxi162Scf00117g01517 Petunia axillaris HOM05D007339 ORTHO05D009302 7.8e-59 231.1 193 58.5
Rhsim02G0238900 Rhododendron simsii HOM05D007339 ORTHO05D009302 7.8e-59 231.1 187 59.9
Sed0025077 Sechium edule HOM05D007339 ORTHO05D009302 1.0e-58 230.7 182 61.0
Sc01g0010030 Simmondsia chinensis HOM05D007339 ORTHO05D009302 1.0e-58 230.7 180 61.1
FAN13G2341 Fragaria x ananassa HOM05D007339 ORTHO05D009302 1.3e-58 230.3 182 63.2
HPP92_020016 Vanilla planifolia HOM05D007339 ORTHO05D009302 1.3e-58 230.3 183 59.6
unitig_22.g6184 Utricularia gibba HOM05D007339 ORTHO05D009302 1.7e-58 229.9 180 61.1
MBI11_g07997_MAGBIO Magnolia biondii HOM05D007339 ORTHO05D009302 3.9e-58 228.8 179 61.5
Lsat_1_v5_gn_3_9640 Lactuca sativa HOM05D007339 ORTHO05D009302 1.5e-57 226.9 184 59.8
PGSC0003DMG400005010 Solanum tuberosum HOM05D007339 ORTHO05D009302 1.9e-57 226.5 206 56.3
Hund14247 Selenicereus undatus HOM05D007339 ORTHO05D009302 3.3e-57 225.7 187 60.4
Ah.07g196890 Amaranthus hybridus HOM05D007339 ORTHO05D009302 7.3e-57 224.6 177 62.1
MBI11_g02478_MAGBIO Magnolia biondii HOM05D007339 ORTHO05D009302 7.3e-57 224.6 179 60.9
Sopen12g028660 Solanum pennellii HOM05D007339 ORTHO05D009302 7.3e-57 224.6 206 56.3
Solyc12g056150.2 Solanum lycopersicum HOM05D007339 ORTHO05D009302 9.5e-57 224.2 206 55.8
PGR031G1180 Punica granatum HOM05D007339 ORTHO05D009302 6.2e-56 221.5 178 62.4
ECA246G1762 Erigeron canadensis HOM05D007339 ORTHO05D009302 2.3e-55 219.5 180 55.0
HanXRQChr17g0535521 Helianthus annuus HOM05D007339 ORTHO05D009302 1.2e-54 217.2 180 57.8
Haze_08703 Corylus avellana HOM05D007339 ORTHO05D009302 1.1e-52 210.7 187 58.3
CDE03G0219 Ceratophyllum demersum HOM05D007339 ORTHO05D009302 1.9e-52 209.9 177 58.2
FAN13G1997 Fragaria x ananassa HOM05D007339 ORTHO05D009302 6.0e-51 204.9 182 57.1
Zm00001eb119650 Zea mays HOM05D007339 ORTHO05D009302 3.9e-50 202.2 178 51.1
Nitab4.5_0004603g0010 Nicotiana tabacum HOM05D007339 ORTHO05D009302 1.1e-49 200.7 196 53.6
ATR0585G140 Amborella trichopoda HOM05D007339 ORTHO05D009302 2.1e-48 196.4 178 55.1
Eucgr.D01784 Eucalyptus grandis HOM05D007339 ORTHO05D009302 4.6e-43 178.7 167 58.7
Mapoly0105s0048 Marchantia polymorpha HOM05D007339 ORTHO05D009302 5.8e-38 161.8 180 45.6
AagrBONN_evm.TU.Sc2ySwM_362.1772 Anthoceros agrestis HOM05D007339 ORTHO05D009302 1.9e-36 156.8 168 48.2
Pp3c9_13440 Physcomitrium patens HOM05D007339 ORTHO05D009302 3.9e-34 149.1 166 45.2
SMO340G0099 Selaginella moellendorffii HOM05D007339 ORTHO05D009302 3.6e-32 142.5 173 43.4
Atru.chr9.2069 Acer truncatum HOM05D007339 ORTHO05D009302 3.3e-25 119.4 123 55.3
SEGI_02509 Sequoiadendron giganteum HOM05D007339 ORTHO05D009302 3.2e-20 102.8 94 52.1
SEGI_37819 Sequoiadendron giganteum HOM05D007339 ORTHO05D009302 3.2e-20 102.8 94 52.1
SEGI_11472 Sequoiadendron giganteum HOM05D007339 ORTHO05D009302 4.2e-20 102.4 90 54.4
Sc20g0000110 Simmondsia chinensis HOM05D007339 ORTHO05D009302 1.1e-17 94.4 89 43.8
Os01g0221900 Oryza sativa ssp. japonica HOM05D007339 ORTHO05D009302 7.4e-17 91.7 88 45.5
CBR_g55541 Chara braunii HOM05D007339 ORTHO05D009302 1.1e-15 87.8 297 25.6
QL02p032024 Quercus lobata HOM05D007339 ORTHO05D009302 2.4e-15 86.7 74 60.8
Atru.chr9.2070 Acer truncatum HOM05D007339 ORTHO05D009302 5.3e-15 85.5 52 80.8
AagrBONN_evm.TU.Sc2ySwM_368.3145 Anthoceros agrestis HOM05D007339 ORTHO05D009302 2.9e-13 79.7 124 39.5
Cre06.g285001 Chlamydomonas reinhardtii HOM05D007339 ORTHO05D009302 3.3e-09 66.2 83 42.2


User provided reference genes

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