Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34039 Trifolium pratense HOM05D000462 ORTHO05D005846 4.8e-76 287.7 144 100.0
TPR.G34026 Trifolium pratense HOM05D000462 ORTHO05D005846 1.1e-43 180.3 85 95.3
Medtr4g083390 Medicago truncatula HOM05D000462 ORTHO05D005846 9.9e-29 130.6 104 58.7
Psat7g132920 Pisum sativum HOM05D000462 ORTHO05D005846 8.7e-25 117.5 90 61.1
arahy.Tifrunner.gnm1.ann1.AX2FME Arachis hypogaea HOM05D000462 ORTHO05D005846 1.2e-21 107.1 113 45.1
arahy.Tifrunner.gnm1.ann1.L6NMZX Arachis hypogaea HOM05D000462 ORTHO05D005846 2.0e-21 106.3 113 45.1
arahy.Tifrunner.gnm1.ann1.62DZ2D Arachis hypogaea HOM05D000462 ORTHO05D005846 6.4e-20 101.3 113 43.4
VMungo0251G1006 Vigna mungo HOM05D000462 ORTHO05D005846 8.4e-20 100.9 113 45.1
Phvul.002G100800 Phaseolus vulgaris HOM05D000462 ORTHO05D005846 3.0e-17 92.4 113 45.1
Lalb_Chr09g0328911 Lupinus albus HOM05D000462 ORTHO05D005846 6.2e-15 84.7 113 42.5
RcHm_v2.0_Chr2g0147411 Rosa chinensis HOM05D000462 ORTHO05D005846 2.4e-14 82.8 88 43.2
Atru.chr2.1657 Acer truncatum HOM05D000462 ORTHO05D005846 3.4e-13 79.0 110 44.5
FAN14G2914 Fragaria x ananassa HOM05D000462 ORTHO05D005846 5.8e-13 78.2 88 39.8
FvH4_6g35582 Fragaria vesca HOM05D000462 ORTHO05D005846 9.9e-13 77.4 88 39.8
CsaV3_3G009950 Cucumis sativus L. HOM05D000462 ORTHO05D005846 6.4e-12 74.7 90 40.0
PGSC0003DMG400042622 Solanum tuberosum HOM05D000462 ORTHO05D005846 6.4e-12 74.7 88 37.5
Haze_03590 Corylus avellana HOM05D000462 ORTHO05D005846 8.4e-12 74.3 98 37.8
Prupe.2G104700 Prunus persica HOM05D000462 ORTHO05D005846 8.4e-12 74.3 88 38.6
Prupe.2G104300 Prunus persica HOM05D000462 ORTHO05D005846 1.1e-11 73.9 90 37.8
MELO3C006216.2 Cucumis melo HOM05D000462 ORTHO05D005846 1.4e-11 73.6 90 40.0
Prupe.2G100300 Prunus persica HOM05D000462 ORTHO05D005846 2.4e-11 72.8 88 37.5
FvH4_6g35581 Fragaria vesca HOM05D000462 ORTHO05D005846 3.2e-11 72.4 74 40.5
Rhsim07G0047200 Rhododendron simsii HOM05D000462 ORTHO05D005846 3.2e-11 72.4 99 38.4
CiPaw.13G054400 Carya illinoinensis HOM05D000462 ORTHO05D005846 5.4e-11 71.6 98 34.7
Lsat_1_v5_gn_5_59060 Lactuca sativa HOM05D000462 ORTHO05D005846 5.4e-11 71.6 88 39.8
Ca_18787_v3 Cicer arietinum L. HOM05D000462 ORTHO05D005846 1.2e-10 70.5 52 61.5
Nitab4.5_0003123g0040 Nicotiana tabacum HOM05D000462 ORTHO05D011162 1.2e-10 70.5 85 38.8
MD07G1080300 Malus domestica HOM05D000462 ORTHO05D005846 1.6e-10 70.1 90 38.9
PGR042G2077 Punica granatum HOM05D000462 ORTHO05D005846 1.6e-10 70.1 88 38.6
RcHm_v2.0_Chr2g0147401 Rosa chinensis HOM05D000462 ORTHO05D005846 1.6e-10 70.1 76 42.1
arahy.Tifrunner.gnm1.ann1.XCU387 Arachis hypogaea HOM05D000462 ORTHO05D005846 2.1e-10 69.7 107 39.3
ClCG05G002510 Citrullus lanatus HOM05D000462 ORTHO05D005846 2.1e-10 69.7 90 38.9
Actinidia21593 Actinidia chinensis HOM05D000462 ORTHO05D005846 6.0e-10 68.2 84 40.5
arahy.Tifrunner.gnm1.ann1.ES60GW Arachis hypogaea HOM05D000462 ORTHO05D005846 6.0e-10 68.2 107 39.3
MSTRG.17069 Avicennia marina HOM05D000462 ORTHO05D005846 6.0e-10 68.2 79 40.5
Migut.N01672 Erythranthe guttata HOM05D000462 ORTHO05D005846 6.0e-10 68.2 79 45.6
ECA240G2690 Erigeron canadensis HOM05D000462 ORTHO05D005846 1.0e-09 67.4 76 43.4
Sed0002685 Sechium edule HOM05D000462 ORTHO05D005846 1.0e-09 67.4 125 31.2
Cfa010675 Carpinus fangiana HOM05D000462 ORTHO05D005846 1.3e-09 67.0 84 35.7
Migut.N01674 Erythranthe guttata HOM05D000462 ORTHO05D005846 3.0e-09 65.9 82 37.8
Dinv43525 Davidia involucrata HOM05D000462 ORTHO05D005846 3.9e-09 65.5 104 34.6
FAN03G2319 Fragaria x ananassa HOM05D000462 ORTHO05D005846 3.9e-09 65.5 90 35.6
Nn3g19412 Nelumbo nucifera HOM05D000462 ORTHO05D005846 3.9e-09 65.5 104 33.7
Nn3g19417 Nelumbo nucifera HOM05D000462 ORTHO05D005846 3.9e-09 65.5 104 33.7
CSS0030224 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 5.1e-09 65.1 105 31.4
CSS0047566 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 5.1e-09 65.1 105 31.4
FvH4_7g07720 Fragaria vesca HOM05D000462 ORTHO05D005846 5.1e-09 65.1 90 36.7
FAN06G2574 Fragaria x ananassa HOM05D000462 ORTHO05D005846 5.1e-09 65.1 90 36.7
Migut.N01673 Erythranthe guttata HOM05D000462 ORTHO05D005846 6.7e-09 64.7 79 43.0
Lsat_1_v5_gn_7_33120 Lactuca sativa HOM05D000462 ORTHO05D005846 8.7e-09 64.3 99 35.4
Sc02g0004850 Simmondsia chinensis HOM05D000462 ORTHO05D005846 8.7e-09 64.3 79 41.8
FAN10G1386 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.5e-08 63.5 90 35.6
RcHm_v2.0_Chr1g0342511 Rosa chinensis HOM05D000462 ORTHO05D005846 1.5e-08 63.5 89 34.8
Oeu013594.1 Olea europaea HOM05D000462 ORTHO05D005846 1.9e-08 63.2 83 38.6
Cc08_g05580 Coffea canephora HOM05D000462 ORTHO05D005846 2.5e-08 62.8 97 36.1
Nn1g09754 Nelumbo nucifera HOM05D000462 ORTHO05D005846 2.5e-08 62.8 74 40.5
FAN06G0093 Fragaria x ananassa HOM05D000462 ORTHO05D005846 4.3e-08 62.0 89 33.7
RcHm_v2.0_Chr1g0342371 Rosa chinensis HOM05D000462 ORTHO05D005846 4.3e-08 62.0 89 36.0
RcHm_v2.0_Chr1g0342401 Rosa chinensis HOM05D000462 ORTHO05D005846 4.3e-08 62.0 89 33.7
SalBow4G1864 Salvia bowleyana HOM05D000462 ORTHO05D005846 4.3e-08 62.0 115 32.2
SalBow4G3150 Salvia bowleyana HOM05D000462 ORTHO05D005846 4.3e-08 62.0 115 32.2
Sopen01g026530 Solanum pennellii HOM05D000462 ORTHO05D005846 4.3e-08 62.0 114 32.5
Os04g0386900 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 5.6e-08 61.6 114 28.9
Sed0009318 Sechium edule HOM05D000462 ORTHO05D005846 5.6e-08 61.6 90 36.7
Oeu039097.1 Olea europaea HOM05D000462 ORTHO05D005846 7.4e-08 61.2 91 38.5
MD02G1233300 Malus domestica HOM05D000462 ORTHO05D005846 9.6e-08 60.8 90 34.4
TAR374G1078 Trochodendron aralioides HOM05D000462 ORTHO05D005846 1.3e-07 60.5 108 32.4
Solyc01g081400.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 1.6e-07 60.1 117 34.2
Sopen01g032970 Solanum pennellii HOM05D000462 ORTHO05D005846 1.6e-07 60.1 117 34.2
AUR62031619 Chenopodium quinoa HOM05D000462 ORTHO05D005846 4.8e-07 58.5 77 39.0
Eucgr.E01753 Eucalyptus grandis HOM05D000462 ORTHO05D005846 4.8e-07 58.5 86 39.5
Peaxi162Scf00907g00221 Petunia axillaris HOM05D000462 ORTHO05D005846 4.8e-07 58.5 96 32.3
Rhsim07G0047100 Rhododendron simsii HOM05D000462 ORTHO05D005846 4.8e-07 58.5 104 36.5
GSVIVG01019293001 Vitis vinifera HOM05D000462 ORTHO05D005846 6.2e-07 58.2 87 36.8
Aqoxy2G03796 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 8.1e-07 57.8 66 40.9
ClCG05G011530 Citrullus lanatus HOM05D000462 ORTHO05D005846 8.1e-07 57.8 115 33.0
CSS0023532 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 1.1e-06 57.4 83 38.6
Cc08_g05560 Coffea canephora HOM05D000462 ORTHO05D005846 1.4e-06 57.0 71 36.6
Peaxi162Scf00245g00411 Petunia axillaris HOM05D000462 ORTHO05D005846 1.4e-06 57.0 126 32.5
EL10Ac4g07923 Beta vulgaris HOM05D000462 ORTHO05D005846 1.8e-06 56.6 101 35.6
HanXRQChr13g0411631 Helianthus annuus HOM05D000462 ORTHO05D005846 1.8e-06 56.6 91 30.8
RcHm_v2.0_Chr1g0342491 Rosa chinensis HOM05D000462 ORTHO05D005846 2.4e-06 56.2 89 33.7
PGSC0003DMG400001798 Solanum tuberosum HOM05D000462 ORTHO05D005846 2.4e-06 56.2 78 39.7
PGSC0003DMG400020979 Solanum tuberosum HOM05D000462 ORTHO05D005846 2.4e-06 56.2 78 39.7
EL10Ac4g07924 Beta vulgaris HOM05D000462 ORTHO05D005846 3.1e-06 55.8 79 34.2
Hma1.2p1_0353F.1_g133250 Hydrangea macrophylla HOM05D000462 ORTHO05D005846 3.1e-06 55.8 77 35.1
Peaxi162Scf00907g00226 Petunia axillaris HOM05D000462 ORTHO05D005846 4.0e-06 55.5 75 34.7
CAN.G992.17 Capsicum annuum HOM05D000462 ORTHO05D005846 5.3e-06 55.1 75 33.3
Nitab4.5_0000792g0060 Nicotiana tabacum HOM05D000462 ORTHO05D005846 5.3e-06 55.1 75 36.0
AUR62031622 Chenopodium quinoa HOM05D000462 ORTHO05D005846 6.9e-06 54.7 82 37.8
Cc08_g05570 Coffea canephora HOM05D000462 ORTHO05D005846 6.9e-06 54.7 73 38.4


User provided reference genes

Program Settings