Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 1.5e-198 696.0 359 100.0
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 7.6e-179 630.6 346 93.1
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 6.4e-178 627.5 361 91.4
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 3.0e-175 618.6 360 89.4
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 1.4e-164 583.2 363 83.2
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 4.0e-164 581.6 363 83.2
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 2.2e-162 575.9 342 84.8
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 1.2e-160 570.1 338 84.9
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 7.9e-160 567.4 358 82.7
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 7.9e-160 567.4 389 78.1
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 2.2e-149 532.7 340 78.5
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 2.8e-149 532.3 348 79.0
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 4.8e-149 531.6 325 80.9
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 6.9e-148 527.7 339 78.2
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 1.2e-147 526.9 339 77.9
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 1.5e-147 526.6 335 78.5
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 2.0e-147 526.2 339 77.9
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 2.6e-147 525.8 347 76.7
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 2.6e-147 525.8 347 77.8
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 4.5e-147 525.0 336 78.0
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 4.5e-147 525.0 347 76.4
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 7.7e-147 524.2 345 76.5
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 1.0e-146 523.9 335 78.8
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 2.2e-146 522.7 337 78.0
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 3.8e-146 521.9 316 82.3
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 1.1e-145 520.4 329 79.3
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 1.9e-145 519.6 357 73.1
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 3.2e-145 518.8 380 70.8
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 3.2e-145 518.8 339 77.0
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 2.7e-144 515.8 323 79.6
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 4.6e-144 515.0 334 76.3
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 6.1e-144 514.6 334 78.7
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 6.1e-144 514.6 346 75.7
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.0e-143 513.8 354 73.4
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.0e-143 513.8 354 73.4
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 1.4e-143 513.5 349 74.2
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 1.4e-143 513.5 335 76.4
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 3.0e-143 512.3 336 77.7
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 8.8e-143 510.8 308 82.8
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 2.5e-142 509.2 342 74.9
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 4.3e-142 508.4 335 75.8
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 4.3e-142 508.4 337 76.3
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 7.4e-142 507.7 362 73.5
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 7.4e-142 507.7 326 77.6
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 9.7e-142 507.3 358 72.1
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 2.8e-141 505.8 331 77.9
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 2.8e-141 505.8 331 77.9
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 3.7e-141 505.4 333 76.0
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 4.8e-141 505.0 325 78.8
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 6.3e-141 504.6 348 74.7
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 8.2e-141 504.2 349 74.5
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 8.2e-141 504.2 325 75.1
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 1.1e-140 503.8 349 74.5
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 1.8e-140 503.1 364 71.7
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 1.8e-140 503.1 327 74.9
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 1.8e-140 503.1 330 76.1
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 2.4e-140 502.7 348 74.4
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 2.4e-140 502.7 348 74.4
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 2.4e-140 502.7 348 74.4
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 2.4e-140 502.7 325 77.8
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 1.2e-139 500.4 325 77.2
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 1.2e-139 500.4 349 74.2
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 1.2e-139 500.4 351 70.7
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 2.0e-139 499.6 325 77.2
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 2.0e-139 499.6 329 75.4
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 4.5e-139 498.4 325 77.2
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 7.7e-139 497.7 349 73.6
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 7.7e-139 497.7 354 70.6
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 7.7e-139 497.7 339 74.3
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.0e-138 497.3 342 72.8
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 1.3e-138 496.9 345 73.3
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 1.3e-138 496.9 345 73.3
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 1.3e-138 496.9 345 73.3
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 2.2e-138 496.1 352 72.7
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 2.9e-138 495.7 302 80.8
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 5.0e-138 495.0 341 73.6
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 5.0e-138 495.0 325 74.8
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 8.5e-138 494.2 316 77.8
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 8.5e-138 494.2 332 75.6
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 1.4e-137 493.4 322 77.3
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 2.5e-137 492.7 316 76.3
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 5.5e-137 491.5 334 73.7
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 1.6e-136 490.0 296 79.7
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 1.6e-136 490.0 331 75.2
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 3.6e-136 488.8 312 75.6
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 1.4e-135 486.9 328 75.0
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 3.9e-135 485.3 340 72.9
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 1.1e-134 483.8 310 76.8
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 1.5e-134 483.4 297 83.2
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 2.6e-134 482.6 290 82.1
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 4.4e-134 481.9 310 76.1
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 5.7e-134 481.5 331 73.1
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 1.3e-133 480.3 280 88.6
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.4e-132 476.9 339 72.0
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 1.4e-132 476.9 346 70.2
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 1.5e-131 473.4 334 74.0
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 5.9e-131 471.5 296 78.4
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 7.7e-131 471.1 341 69.8
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 3.2e-129 465.7 316 74.4
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 3.2e-129 465.7 339 70.5
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 9.4e-129 464.2 324 73.1
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 1.0e-127 460.7 307 75.6
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 3.9e-127 458.8 365 65.8
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 5.2e-127 458.4 311 74.3
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.5e-126 456.8 327 72.2
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 2.0e-126 456.4 334 68.6
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 2.6e-126 456.1 320 68.4
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 4.4e-126 455.3 319 72.1
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 5.3e-124 448.4 309 72.2
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 2.2e-122 443.0 361 66.5
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 8.5e-122 441.0 328 66.8
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 1.9e-121 439.9 313 70.9
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 4.2e-121 438.7 341 64.5
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 1.0e-119 434.1 373 61.7
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 1.0e-119 434.1 354 65.8
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 9.7e-118 427.6 298 73.8
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 2.8e-117 426.0 293 70.6
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 7.0e-116 421.4 339 66.4
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 1.0e-111 407.5 257 80.9
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 3.0e-111 406.0 306 70.3
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 4.4e-110 402.1 350 60.9
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 4.8e-109 398.7 348 60.6
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 4.8e-109 398.7 348 60.6
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 5.0e-106 388.7 293 68.3
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 2.8e-104 382.9 347 59.4
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 8.0e-104 381.3 242 78.5
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.4e-103 380.6 309 62.5
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 9.8e-102 374.4 241 76.8
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 1.3e-101 374.0 244 75.4
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 2.0e-99 366.7 310 62.9
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 9.5e-89 331.3 203 78.8
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 9.8e-86 321.2 199 77.9
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 1.0e-82 311.2 202 71.8
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 6.6e-82 308.5 238 67.2
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 8.1e-80 301.6 347 50.4
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 3.3e-73 279.6 197 74.1
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 6.2e-72 275.4 262 59.5
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 1.6e-64 250.8 176 72.7
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 3.8e-61 239.6 173 67.6
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 3.5e-59 233.0 167 72.5
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 9.6e-41 171.8 125 66.4
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 8.2e-40 168.7 125 65.6
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.6e-38 163.7 116 68.1
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 4.3e-33 146.4 100 72.0
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 1.4e-31 141.4 117 70.1
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 2.0e-30 137.5 83 74.7
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 7.7e-30 135.6 126 58.7
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.7e-29 134.4 90 73.3
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 1.9e-28 131.0 118 61.9
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 2.7e-27 127.1 276 29.7
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 5.7e-25 119.4 120 51.7
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 7.4e-25 119.0 88 70.5
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.8e-23 114.4 86 61.6
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 2.9e-21 107.1 79 77.2
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 2.1e-19 100.9 87 55.2
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 3.0e-18 97.1 97 48.5
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 7.4e-17 92.4 55 67.3
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 3.7e-16 90.1 70 72.9
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 1.2e-11 75.1 43 74.4


User provided reference genes

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