Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34026 Trifolium pratense HOM05D000462 ORTHO05D005846 1.0e-84 316.6 149 100.0
Medtr4g083390 Medicago truncatula HOM05D000462 ORTHO05D005846 8.3e-47 190.7 148 61.5
TPR.G34039 Trifolium pratense HOM05D000462 ORTHO05D005846 8.6e-44 180.6 85 95.3
Psat7g132920 Pisum sativum HOM05D000462 ORTHO05D005846 1.6e-37 159.8 119 63.0
Ca_18787_v3 Cicer arietinum L. HOM05D000462 ORTHO05D005846 3.5e-37 158.7 119 66.4
arahy.Tifrunner.gnm1.ann1.AX2FME Arachis hypogaea HOM05D000462 ORTHO05D005846 3.2e-30 135.6 132 49.2
arahy.Tifrunner.gnm1.ann1.L6NMZX Arachis hypogaea HOM05D000462 ORTHO05D005846 5.4e-30 134.8 133 48.9
Phvul.002G100800 Phaseolus vulgaris HOM05D000462 ORTHO05D005846 5.4e-30 134.8 136 50.0
VMungo0251G1006 Vigna mungo HOM05D000462 ORTHO05D005846 5.4e-30 134.8 136 47.8
Atru.chr2.1657 Acer truncatum HOM05D000462 ORTHO05D005846 1.2e-26 123.6 128 48.4
Haze_03590 Corylus avellana HOM05D000462 ORTHO05D005846 1.1e-25 120.6 126 46.8
Lalb_Chr09g0328911 Lupinus albus HOM05D000462 ORTHO05D005846 1.1e-25 120.6 132 46.2
Prupe.2G104700 Prunus persica HOM05D000462 ORTHO05D005846 1.8e-25 119.8 131 45.0
CiPaw.13G054400 Carya illinoinensis HOM05D000462 ORTHO05D005846 2.4e-25 119.4 133 43.6
arahy.Tifrunner.gnm1.ann1.62DZ2D Arachis hypogaea HOM05D000462 ORTHO05D005846 3.1e-25 119.0 112 49.1
FAN14G2914 Fragaria x ananassa HOM05D000462 ORTHO05D005846 6.9e-25 117.9 123 48.8
Prupe.2G100300 Prunus persica HOM05D000462 ORTHO05D005846 6.9e-25 117.9 131 44.3
FvH4_6g35582 Fragaria vesca HOM05D000462 ORTHO05D005846 1.2e-24 117.1 123 48.8
MD07G1080300 Malus domestica HOM05D000462 ORTHO05D005846 2.6e-24 115.9 131 44.3
Nn3g19412 Nelumbo nucifera HOM05D000462 ORTHO05D005846 2.6e-24 115.9 130 44.6
Nn3g19417 Nelumbo nucifera HOM05D000462 ORTHO05D005846 2.6e-24 115.9 130 44.6
RcHm_v2.0_Chr2g0147401 Rosa chinensis HOM05D000462 ORTHO05D005846 2.6e-24 115.9 125 45.6
RcHm_v2.0_Chr2g0147411 Rosa chinensis HOM05D000462 ORTHO05D005846 2.6e-24 115.9 108 51.9
Cfa010675 Carpinus fangiana HOM05D000462 ORTHO05D005846 3.4e-24 115.5 135 42.2
FvH4_6g35581 Fragaria vesca HOM05D000462 ORTHO05D005846 3.4e-24 115.5 124 44.4
Prupe.2G104300 Prunus persica HOM05D000462 ORTHO05D005846 4.4e-24 115.2 131 43.5
Rhsim07G0047200 Rhododendron simsii HOM05D000462 ORTHO05D005846 4.4e-24 115.2 128 46.9
Nitab4.5_0003123g0040 Nicotiana tabacum HOM05D000462 ORTHO05D011162 5.8e-24 114.8 134 44.0
Migut.N01672 Erythranthe guttata HOM05D000462 ORTHO05D005846 7.6e-24 114.4 130 46.2
Actinidia21593 Actinidia chinensis HOM05D000462 ORTHO05D005846 1.3e-23 113.6 133 44.4
MELO3C006216.2 Cucumis melo HOM05D000462 ORTHO05D005846 6.4e-23 111.3 124 46.0
Dinv43525 Davidia involucrata HOM05D000462 ORTHO05D005846 8.4e-23 110.9 133 42.9
ClCG05G002510 Citrullus lanatus HOM05D000462 ORTHO05D005846 1.1e-22 110.5 124 46.0
Migut.N01674 Erythranthe guttata HOM05D000462 ORTHO05D005846 1.4e-22 110.2 133 40.6
PGSC0003DMG400042622 Solanum tuberosum HOM05D000462 ORTHO05D005846 1.4e-22 110.2 134 42.5
MSTRG.17069 Avicennia marina HOM05D000462 ORTHO05D005846 2.4e-22 109.4 131 44.3
Sed0002685 Sechium edule HOM05D000462 ORTHO05D005846 2.4e-22 109.4 130 42.3
Migut.N01673 Erythranthe guttata HOM05D000462 ORTHO05D005846 7.1e-22 107.8 130 43.8
Eucgr.E01753 Eucalyptus grandis HOM05D000462 ORTHO05D005846 1.6e-21 106.7 135 45.2
FAN03G2319 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.6e-21 106.7 135 40.7
arahy.Tifrunner.gnm1.ann1.ES60GW Arachis hypogaea HOM05D000462 ORTHO05D005846 2.1e-21 106.3 115 47.0
CsaV3_3G009950 Cucumis sativus L. HOM05D000462 ORTHO05D005846 2.1e-21 106.3 124 44.4
FvH4_7g07720 Fragaria vesca HOM05D000462 ORTHO05D005846 2.1e-21 106.3 135 41.5
FAN06G2574 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.1e-21 106.3 135 41.5
MD02G1233300 Malus domestica HOM05D000462 ORTHO05D005846 2.7e-21 105.9 131 41.2
FAN10G1386 Fragaria x ananassa HOM05D000462 ORTHO05D005846 7.8e-21 104.4 135 40.7
CSS0023532 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 1.0e-20 104.0 133 44.4
arahy.Tifrunner.gnm1.ann1.XCU387 Arachis hypogaea HOM05D000462 ORTHO05D005846 1.3e-20 103.6 121 44.6
CSS0030224 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 1.3e-20 103.6 111 44.1
CSS0047566 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 1.3e-20 103.6 111 44.1
RcHm_v2.0_Chr1g0342371 Rosa chinensis HOM05D000462 ORTHO05D005846 1.3e-20 103.6 109 46.8
Cc08_g05580 Coffea canephora HOM05D000462 ORTHO05D005846 1.7e-20 103.2 120 42.5
Sed0009318 Sechium edule HOM05D000462 ORTHO05D005846 1.7e-20 103.2 128 43.8
Rhsim07G0047100 Rhododendron simsii HOM05D000462 ORTHO05D005846 2.3e-20 102.8 133 42.1
ClCG05G011530 Citrullus lanatus HOM05D000462 ORTHO05D005846 3.0e-20 102.4 130 42.3
RcHm_v2.0_Chr1g0342401 Rosa chinensis HOM05D000462 ORTHO05D005846 3.0e-20 102.4 128 41.4
EL10Ac4g07923 Beta vulgaris HOM05D000462 ORTHO05D005846 3.9e-20 102.1 113 46.0
ECA240G2690 Erigeron canadensis HOM05D000462 ORTHO05D005846 8.7e-20 100.9 117 46.2
Lsat_1_v5_gn_5_59060 Lactuca sativa HOM05D000462 ORTHO05D005846 1.5e-19 100.1 126 41.3
Hma1.2p1_0353F.1_g133250 Hydrangea macrophylla HOM05D000462 ORTHO05D005846 1.9e-19 99.8 126 40.5
TAR374G1078 Trochodendron aralioides HOM05D000462 ORTHO05D005846 1.9e-19 99.8 118 44.1
EL10Ac4g07924 Beta vulgaris HOM05D000462 ORTHO05D005846 2.5e-19 99.4 110 41.8
AUR62031622 Chenopodium quinoa HOM05D000462 ORTHO05D005846 4.3e-19 98.6 112 45.5
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 7.3e-19 97.8 112 45.5
GSVIVG01019293001 Vitis vinifera HOM05D000462 ORTHO05D005846 7.3e-19 97.8 114 47.4
RcHm_v2.0_Chr1g0342491 Rosa chinensis HOM05D000462 ORTHO05D005846 9.6e-19 97.4 136 38.2
Sc02g0004850 Simmondsia chinensis HOM05D000462 ORTHO05D005846 9.6e-19 97.4 108 47.2
PGR042G2077 Punica granatum HOM05D000462 ORTHO05D005846 1.3e-18 97.1 115 41.7
Aqoxy2G03796 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 2.1e-18 96.3 131 41.2
Cc00_g12640 Coffea canephora HOM05D000462 ORTHO05D005846 2.1e-18 96.3 128 35.9
Cc08_g05560 Coffea canephora HOM05D000462 ORTHO05D005846 2.1e-18 96.3 103 46.6
Lsat_1_v5_gn_7_33120 Lactuca sativa HOM05D000462 ORTHO05D005846 2.1e-18 96.3 107 46.7
Nn1g09754 Nelumbo nucifera HOM05D000462 ORTHO05D005846 2.1e-18 96.3 122 41.8
Peaxi162Scf00245g00411 Petunia axillaris HOM05D000462 ORTHO05D005846 4.8e-18 95.1 139 41.7
SalBow4G1864 Salvia bowleyana HOM05D000462 ORTHO05D005846 6.2e-18 94.7 112 41.1
SalBow4G3150 Salvia bowleyana HOM05D000462 ORTHO05D005846 6.2e-18 94.7 112 41.1
PGSC0003DMG400001798 Solanum tuberosum HOM05D000462 ORTHO05D005846 6.2e-18 94.7 128 43.0
PGSC0003DMG400020979 Solanum tuberosum HOM05D000462 ORTHO05D005846 6.2e-18 94.7 128 43.0
vmacro13593 Vaccinium macrocarpon HOM05D000462 ORTHO05D005846 6.2e-18 94.7 133 41.4
Sopen01g026530 Solanum pennellii HOM05D000462 ORTHO05D005846 8.1e-18 94.4 139 37.4
Cc08_g05570 Coffea canephora HOM05D000462 ORTHO05D005846 1.1e-17 94.0 119 42.0
Zm00001eb421100 Zea mays HOM05D000462 ORTHO05D005846 1.1e-17 94.0 142 34.5
Aqoxy3G02219 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.4e-17 93.6 126 42.9
Peaxi162Scf00907g00221 Petunia axillaris HOM05D000462 ORTHO05D005846 1.8e-17 93.2 140 38.6
Solyc01g081400.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 1.8e-17 93.2 128 43.0
Sopen01g032970 Solanum pennellii HOM05D000462 ORTHO05D005846 1.8e-17 93.2 128 43.0
CAN.G992.17 Capsicum annuum HOM05D000462 ORTHO05D005846 2.4e-17 92.8 117 43.6
Oeu013594.1 Olea europaea HOM05D000462 ORTHO05D005846 3.1e-17 92.4 109 41.3
Nitab4.5_0000792g0060 Nicotiana tabacum HOM05D000462 ORTHO05D005846 4.0e-17 92.0 117 44.4
Glyma.07G224100 Glycine max HOM05D000462 ORTHO05D005846 6.9e-17 91.3 87 51.7
PSO063G2746 Papaver somniferum HOM05D000462 ORTHO05D005846 1.2e-16 90.5 123 42.3
Aqoxy3G00515 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.5e-16 90.1 108 45.4
Oeu039097.1 Olea europaea HOM05D000462 ORTHO05D005846 1.5e-16 90.1 115 40.0
Peaxi162Scf00907g00226 Petunia axillaris HOM05D000462 ORTHO05D005846 1.5e-16 90.1 108 42.6
Aqoxy7G00268 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 2.6e-16 89.4 117 41.0
DCAR_029566 Daucus carota HOM05D000462 ORTHO05D005846 3.4e-16 89.0 133 39.1
PSO782G4146 Papaver somniferum HOM05D000462 ORTHO05D005846 4.5e-16 88.6 123 40.7
DCAR_029563 Daucus carota HOM05D000462 ORTHO05D005846 7.6e-16 87.8 128 38.3
unitig_749.g14241 Utricularia gibba HOM05D000462 ORTHO05D005846 1.3e-15 87.0 120 38.3
Hund26858 Selenicereus undatus HOM05D000462 ORTHO05D005846 1.7e-15 86.7 128 40.6
Solyc01g150140.1 Solanum lycopersicum HOM05D000462 ORTHO05D005846 2.2e-15 86.3 107 41.1
DCAR_029565 Daucus carota HOM05D000462 ORTHO05D005846 2.9e-15 85.9 135 37.8
Os04g0386900 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 4.9e-15 85.1 130 33.1
CAN.G206.135 Capsicum annuum HOM05D000462 ORTHO05D005846 8.4e-15 84.3 127 37.0
PSO017G2480 Papaver somniferum HOM05D000462 ORTHO05D005846 8.4e-15 84.3 123 39.0
HanXRQChr13g0411631 Helianthus annuus HOM05D000462 ORTHO05D005846 2.4e-14 82.8 119 37.0
RcHm_v2.0_Chr1g0342511 Rosa chinensis HOM05D000462 ORTHO05D005846 2.4e-14 82.8 91 42.9
SalBow4G2124 Salvia bowleyana HOM05D000462 ORTHO05D005846 2.4e-14 82.8 110 41.8
Nitab4.5_0000050g0130 Nicotiana tabacum HOM05D000462 ORTHO05D005846 3.2e-14 82.4 118 38.1
SalBow4G2827 Salvia bowleyana HOM05D000462 ORTHO05D005846 3.2e-14 82.4 110 42.7
FAN06G0093 Fragaria x ananassa HOM05D000462 ORTHO05D005846 4.2e-14 82.0 98 39.8
unitig_26.g8840 Utricularia gibba HOM05D000462 ORTHO05D005846 4.2e-14 82.0 109 34.9
HPP92_014959 Vanilla planifolia HOM05D000462 ORTHO05D005846 5.4e-14 81.6 118 38.1
PSO478G1321 Papaver somniferum HOM05D000462 ORTHO05D005846 7.1e-14 81.3 123 37.4
AUR62031619 Chenopodium quinoa HOM05D000462 ORTHO05D005846 9.3e-14 80.9 104 40.4
unitig_750.g28427 Utricularia gibba HOM05D000462 ORTHO05D005846 1.6e-13 80.1 149 36.2
AUR62015689 Chenopodium quinoa HOM05D000462 ORTHO05D005846 2.1e-13 79.7 105 40.0
FAN14G3081 Fragaria x ananassa HOM05D000462 ORTHO05D005846 6.0e-13 78.2 101 39.6
AUR62031621 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.3e-12 77.0 104 38.5
Ciclev10033936m.g Citrus clementina HOM05D000462 ORTHO05D005846 3.0e-12 75.9 94 42.6
SalBow4G0191 Salvia bowleyana HOM05D009568 ORTHO05D011026 3.0e-12 75.9 107 41.1
SalBow4G0706 Salvia bowleyana HOM05D009568 ORTHO05D011026 3.0e-12 75.9 107 41.1
Solyc07g017470.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 3.0e-12 75.9 76 50.0
ECA236G1772 Erigeron canadensis HOM05D000462 ORTHO05D005846 3.9e-12 75.5 120 40.0
SGA_v2.0_scaffold4G02224 Striga asiatica HOM05D000462 ORTHO05D005846 5.1e-12 75.1 128 35.2
CANSAT78G2521 Cannabis sativa HOM05D000462 ORTHO05D005846 1.1e-11 73.9 77 44.2
Cpa.g.sc73.65 Carica papaya HOM05D000462 ORTHO05D005846 1.1e-11 73.9 93 43.0
AUR62020518 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.9e-11 73.2 130 32.3
HanXRQChr01g0021801 Helianthus annuus HOM05D000462 ORTHO05D005846 2.5e-11 72.8 100 39.0
CDE03G0429 Ceratophyllum demersum HOM05D000462 ORTHO05D005846 3.3e-11 72.4 89 37.1
AUR62015684 Chenopodium quinoa HOM05D000462 ORTHO05D005846 9.6e-11 70.9 129 31.0
Nitab4.5_0006461g0020 Nicotiana tabacum HOM05D000462 ORTHO05D005846 1.3e-10 70.5 85 47.1
Os06g0112300 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 4.8e-10 68.6 124 32.3
FAN10G1699 Fragaria x ananassa HOM05D000462 ORTHO05D005846 5.3e-09 65.1 60 50.0
CANSAT01G2326 Cannabis sativa HOM05D000395 ORTHO05D000088 2.6e-08 62.8 71 49.3
Cpa.g.c42681 Carica papaya HOM05D000462 ORTHO05D005846 3.4e-08 62.4 68 44.1
Lj2A564T41 Lonicera japonica HOM05D000395 ORTHO05D000088 2.9e-07 59.3 111 31.5
Lj2A565G28 Lonicera japonica HOM05D000395 ORTHO05D000088 2.9e-07 59.3 111 31.5
Lj2A565G29 Lonicera japonica HOM05D000395 ORTHO05D000088 6.4e-07 58.2 111 30.6
Lj2A600T56 Lonicera japonica HOM05D000395 ORTHO05D000088 1.9e-06 56.6 110 31.8
Lj2C600T9 Lonicera japonica HOM05D000395 ORTHO05D000088 1.9e-06 56.6 120 31.7
SGA_v2.0_scaffold98G29378 Striga asiatica HOM05D000462 ORTHO05D005846 1.9e-06 56.6 103 32.0
CAN.G992.16 Capsicum annuum HOM05D000462 ORTHO05D005846 2.4e-06 56.2 78 42.3
PSO017G5313 Papaver somniferum HOM05D000823 ORTHO05D000088 2.4e-06 56.2 93 31.2
SEGI_28063 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 4.2e-06 55.5 103 27.2
Nitab4.5_0000216g0220 Nicotiana tabacum HOM05D010896 ORTHO05D011162 9.3e-06 54.3 74 36.5
PSO063G3506 Papaver somniferum HOM05D000823 ORTHO05D000088 9.3e-06 54.3 93 31.2
Peaxi162Scf00104g00047 Petunia axillaris HOM05D000462 ORTHO05D005846 9.3e-06 54.3 108 36.1


User provided reference genes

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