Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34010 Trifolium pratense HOM05D002674 ORTHO05D007700 3.2e-134 481.9 261 100.0
Psat6g166040 Pisum sativum HOM05D002674 ORTHO05D007700 5.1e-116 421.4 261 83.5
Ca_10339_v3 Cicer arietinum L. HOM05D002674 ORTHO05D007700 2.1e-114 416.0 268 84.7
Medtr1g088580 Medicago truncatula HOM05D002674 ORTHO05D007700 4.2e-102 375.2 260 78.1
Glyma.02G018300 Glycine max HOM05D002674 ORTHO05D007700 3.5e-101 372.1 275 74.9
Phvul.007G146100 Phaseolus vulgaris HOM05D002674 ORTHO05D007700 6.0e-93 344.7 275 69.8
Lj5g0010238 Lotus japonicus HOM05D002674 ORTHO05D007700 6.7e-92 341.3 276 72.1
Glyma.10G018600 Glycine max HOM05D002674 ORTHO05D007700 1.6e-90 336.7 281 68.0
Atru.chr5.1151 Acer truncatum HOM05D002674 ORTHO05D007700 9.0e-81 304.3 273 64.8
MD11G1310500 Malus domestica HOM05D002674 ORTHO05D007700 2.0e-80 303.1 273 63.4
Prupe.8G261000 Prunus persica HOM05D002674 ORTHO05D007700 6.5e-79 298.1 285 60.4
MD03G1287800 Malus domestica HOM05D002674 ORTHO05D007700 4.6e-77 292.0 278 60.8
Thecc.01G299900 Theobroma cacao HOM05D002674 ORTHO05D007700 2.5e-75 286.2 278 61.5
CANSAT25G1821 Cannabis sativa HOM05D002674 ORTHO05D007700 6.3e-74 281.6 275 59.3
Ciclev10021537m.g Citrus clementina HOM05D002674 ORTHO05D007700 6.3e-74 281.6 284 60.6
Gohir.D08G085300 Gossypium hirsutum HOM05D002674 ORTHO05D007700 1.1e-73 280.8 276 60.5
COL.COLO4_23350 Corchorus olitorius HOM05D002674 ORTHO05D007700 1.4e-73 280.4 274 60.9
Gorai.004G089800 Gossypium raimondii HOM05D002674 ORTHO05D007700 4.1e-73 278.9 274 60.2
Gohir.A08G075900 Gossypium hirsutum HOM05D002674 ORTHO05D007700 5.3e-73 278.5 274 60.6
FAN20G3185 Fragaria x ananassa HOM05D002674 ORTHO05D007700 9.1e-73 277.7 271 61.3
VMungo0720G0138 Vigna mungo HOM05D002674 ORTHO05D007700 9.1e-73 277.7 240 65.4
FvH4_2g25690 Fragaria vesca HOM05D002674 ORTHO05D007700 1.2e-72 277.3 274 61.7
FAN27G2781 Fragaria x ananassa HOM05D002674 ORTHO05D007700 3.4e-72 275.8 274 59.5
RcHm_v2.0_Chr6g0293961 Rosa chinensis HOM05D002674 ORTHO05D007700 3.4e-72 275.8 277 61.7
FAN15G1012 Fragaria x ananassa HOM05D002674 ORTHO05D007700 7.7e-72 274.6 271 60.9
Duzib138G1545 Durio zibethinus HOM05D002674 ORTHO05D007700 1.0e-71 274.2 276 61.6
FAN24G1157 Fragaria x ananassa HOM05D002674 ORTHO05D007700 1.0e-71 274.2 274 61.3
ClCG10G010900 Citrullus lanatus HOM05D002674 ORTHO05D007700 2.2e-71 273.1 274 58.0
CsaV3_4G000780 Cucumis sativus L. HOM05D002674 ORTHO05D007700 2.2e-71 273.1 274 58.4
Manes.01G218600 Manihot esculenta HOM05D002674 ORTHO05D007700 2.9e-71 272.7 273 61.5
MELO3C017958.2 Cucumis melo HOM05D002674 ORTHO05D007700 3.8e-71 272.3 274 58.4
Sed0013149 Sechium edule HOM05D002674 ORTHO05D007700 5.0e-71 271.9 255 61.6
Duzib133G1209 Durio zibethinus HOM05D002674 ORTHO05D007700 7.2e-70 268.1 277 59.2
QL12p028514 Quercus lobata HOM05D002674 ORTHO05D007700 7.2e-70 268.1 300 56.7
CiPaw.07G108400 Carya illinoinensis HOM05D002674 ORTHO05D007700 9.4e-70 267.7 273 59.0
TWI23G1032 Tripterygium wilfordii HOM05D002674 ORTHO05D007700 4.7e-69 265.4 267 61.0
Cfa005916 Carpinus fangiana HOM05D002674 ORTHO05D007700 3.0e-68 262.7 278 59.7
Dinv33053 Davidia involucrata HOM05D002674 ORTHO05D007700 1.5e-67 260.4 279 58.4
Actinidia24347 Actinidia chinensis HOM05D002674 ORTHO05D007700 4.8e-66 255.4 267 58.8
Lalb_Chr06g0163511 Lupinus albus HOM05D002674 ORTHO05D007700 8.2e-66 254.6 269 59.9
Lj1A25T5 Lonicera japonica HOM05D002674 ORTHO05D007700 9.1e-65 251.1 268 59.3
TAR365G1234 Trochodendron aralioides HOM05D002674 ORTHO05D007700 5.9e-64 248.4 269 56.1
CSS0049735 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D007700 7.2e-62 241.5 270 60.4
Potri.014G129500 Populus trichocarpa HOM05D002674 ORTHO05D007700 2.1e-61 240.0 283 56.2
Potri.002G204700 Populus trichocarpa HOM05D002674 ORTHO05D007700 1.0e-60 237.7 278 56.5
MBI19_g25354_MAGBIO Magnolia biondii HOM05D002674 ORTHO05D007700 5.2e-60 235.3 283 51.9
Sabra14G0096100 Salix brachista HOM05D002674 ORTHO05D007700 1.5e-59 233.8 281 54.1
Nitab4.5_0002470g0100 Nicotiana tabacum HOM05D002674 ORTHO05D007700 4.8e-58 228.8 279 55.6
Aqoxy5G00752 Aquilegia oxysepala HOM05D002674 ORTHO05D007700 6.3e-58 228.4 278 50.4
Cc01_g20810 Coffea canephora HOM05D002674 ORTHO05D007700 4.1e-57 225.7 276 56.9
Rhsim01G0243300 Rhododendron simsii HOM05D002674 ORTHO05D007700 1.6e-56 223.8 289 52.2
PGSC0003DMG402017938 Solanum tuberosum HOM05D002674 ORTHO05D007700 3.5e-56 222.6 271 55.4
Sopen06g003880 Solanum pennellii HOM05D002674 ORTHO05D007700 4.5e-56 222.2 271 55.4
Solyc06g009120.3 Solanum lycopersicum HOM05D002674 ORTHO05D007700 7.7e-56 221.5 271 55.4
Sabra02G0154700 Salix brachista HOM05D002674 ORTHO05D008110 1.0e-55 221.1 260 55.0
CSS0000533 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D007700 1.3e-55 220.7 271 56.1
THA.LOC104815928 Tarenaya hassleriana HOM05D002674 ORTHO05D007700 1.3e-55 220.7 267 52.1
Nitab4.5_0005805g0020 Nicotiana tabacum HOM05D002674 ORTHO05D007700 1.0e-52 211.1 276 54.3
TAR636G1278 Trochodendron aralioides HOM05D002674 ORTHO05D007700 1.4e-52 210.7 279 49.8
Eucgr.K03478 Eucalyptus grandis HOM05D002674 ORTHO05D007700 1.8e-52 210.3 283 49.8
Sp6g02330 Schrenkiella parvula HOM05D002674 ORTHO05D007700 3.0e-52 209.5 271 50.2
SGA_v2.0_scaffold1G00369 Striga asiatica HOM05D002674 ORTHO05D007700 3.0e-52 209.5 267 53.2
BolC2t09909H Brassica oleracea HOM05D002674 ORTHO05D007700 1.2e-51 207.6 267 50.2
CARHR250690 Cardamine hirsuta HOM05D002674 ORTHO05D007700 1.2e-51 207.6 279 49.5
AT4G02425 Arabidopsis thaliana HOM05D002674 ORTHO05D007700 5.7e-51 205.3 271 50.2
C02p38980 Brassica napus HOM05D002674 ORTHO05D007700 5.7e-51 205.3 267 49.8
Carub.0006s3472 Capsella rubella HOM05D002674 ORTHO05D007700 5.7e-51 205.3 268 50.0
A02p24720 Brassica napus HOM05D002674 ORTHO05D007700 7.5e-51 204.9 264 50.8
Migut.D00215 Erythranthe guttata HOM05D002674 ORTHO05D007700 9.8e-51 204.5 252 53.2
arahy.Tifrunner.gnm1.ann1.2P60TQ Arachis hypogaea HOM05D002674 ORTHO05D007700 1.7e-50 203.8 243 53.9
Hma1.2p1_0491F.1_g164500 Hydrangea macrophylla HOM05D002674 ORTHO05D007700 2.2e-50 203.4 202 59.9
Lsat_1_v5_gn_9_5620 Lactuca sativa HOM05D002674 ORTHO05D007700 2.8e-50 203.0 268 54.1
Thhalv10028893m.g Eutrema salsugineum HOM05D002674 ORTHO05D007700 6.3e-50 201.8 277 48.0
BcaC03g16124 Brassica carinata HOM05D002674 ORTHO05D007700 1.1e-49 201.1 267 49.1
BraA02t07459Z Brassica rapa HOM05D002674 ORTHO05D007700 1.4e-49 200.7 267 49.8
HanXRQChr10g0284651 Helianthus annuus HOM05D002674 ORTHO05D007700 1.4e-49 200.7 294 49.0
Nn3g21481 Nelumbo nucifera HOM05D002674 ORTHO05D007700 1.4e-49 200.7 236 53.4
arahy.Tifrunner.gnm1.ann1.YN8C8B Arachis hypogaea HOM05D002674 ORTHO05D007700 4.1e-49 199.1 244 52.5
PSO832G4034 Papaver somniferum HOM05D002674 ORTHO05D007700 7.0e-49 198.4 273 50.5
EL10Ac7g17509 Beta vulgaris HOM05D002674 ORTHO05D007700 5.9e-48 195.3 300 46.3
Sc24g0003790 Simmondsia chinensis HOM05D002674 ORTHO05D007700 6.5e-47 191.8 282 48.6
HPP92_025205 Vanilla planifolia HOM05D002674 ORTHO05D007700 4.2e-46 189.1 265 47.9
THA.LOC104825970 Tarenaya hassleriana HOM05D002674 ORTHO05D007700 1.2e-45 187.6 284 45.8
AL6G50650 Arabidopsis lyrata HOM05D002674 ORTHO05D007700 4.7e-45 185.7 224 52.7
Lsat_1_v5_gn_7_11800 Lactuca sativa HOM05D002674 ORTHO05D007700 1.0e-44 184.5 248 53.2
Peaxi162Scf00399g00714 Petunia axillaris HOM05D002674 ORTHO05D007700 3.0e-44 183.0 297 46.5
Hund18157 Selenicereus undatus HOM05D002674 ORTHO05D007700 3.0e-44 183.0 293 46.4
BcaB05g23628 Brassica carinata HOM05D002674 ORTHO05D007700 5.2e-44 182.2 203 56.2
CDE11G0633 Ceratophyllum demersum HOM05D002674 ORTHO05D007700 6.8e-44 181.8 267 46.8
DCAR_002828 Daucus carota HOM05D002674 ORTHO05D007700 1.5e-43 180.6 256 52.3
Ah.15g093240 Amaranthus hybridus HOM05D002674 ORTHO05D007700 3.4e-43 179.5 299 46.2
Aa31LG1G9740 Aethionema arabicum HOM05D002674 ORTHO05D007700 5.7e-43 178.7 271 46.5
CDE05G2513 Ceratophyllum demersum HOM05D002674 ORTHO05D007700 6.3e-42 175.3 267 45.7
Carub.0001s0195 Capsella rubella HOM05D002674 ORTHO05D007700 1.8e-41 173.7 255 49.4
ECA247G3124 Erigeron canadensis HOM05D002674 ORTHO05D007700 3.3e-38 162.9 264 47.0
CAN.G1280.1 Capsicum annuum HOM05D002674 ORTHO05D007700 1.8e-36 157.1 237 53.2
vmacro15007 Vaccinium macrocarpon HOM05D002674 ORTHO05D007700 4.0e-36 156.0 248 47.6
unitig_22.g5241 Utricularia gibba HOM05D002674 ORTHO05D007700 1.5e-35 154.1 227 50.2
Oeu054122.1 Olea europaea HOM05D002674 ORTHO05D007700 2.9e-34 149.8 168 58.9
AUR62033139 Chenopodium quinoa HOM05D002674 ORTHO05D007700 7.0e-33 145.2 221 48.9
Oeu053149.1 Olea europaea HOM05D002674 ORTHO05D007700 9.2e-33 144.8 168 61.3
ATR0796G100 Amborella trichopoda HOM05D002674 ORTHO05D007700 1.5e-30 137.5 278 37.4
SEGI_12569 Sequoiadendron giganteum HOM05D002674 ORTHO05D007700 2.8e-29 133.3 348 35.6
Aa31LG5G2060 Aethionema arabicum HOM05D002674 ORTHO05D007700 6.2e-29 132.1 237 41.4
AUR62008632 Chenopodium quinoa HOM05D002674 ORTHO05D007700 6.8e-28 128.6 176 51.7
Hma1.2p1_0491F.1_g164510 Hydrangea macrophylla HOM05D002674 ORTHO05D007700 7.8e-24 115.2 107 65.4
Os01g0316500 Oryza sativa ssp. japonica HOM05D002674 ORTHO05D007700 2.0e-19 100.5 248 36.3
Zm00001eb285590 Zea mays HOM05D002674 ORTHO05D007700 1.7e-18 97.4 236 36.9
HPP92_006921 Vanilla planifolia HOM05D002674 ORTHO05D007700 2.2e-18 97.1 220 36.8
Zm00001eb127170 Zea mays HOM05D002674 ORTHO05D007700 4.9e-18 95.9 261 34.5
CANSAT56G3445 Cannabis sativa HOM05D002674 ORTHO05D007700 1.1e-17 94.7 93 58.1
VMungo0720G2130 Vigna mungo HOM05D002674 ORTHO05D007700 6.8e-12 75.5 37 91.9
BolC6t36475H Brassica oleracea HOM05D000186 ORTHO05D015008 1.1e-09 68.2 91 46.2
BcaC03g16430 Brassica carinata HOM05D002674 ORTHO05D007700 2.7e-08 63.5 81 45.7
Haze_04933 Corylus avellana HOM05D002674 ORTHO05D007700 6.0e-08 62.4 35 74.3
Zm00001eb018450 Zea mays HOM05D002674 ORTHO05D007700 5.1e-07 59.3 223 32.3
Rhsim01G0284900 Rhododendron simsii HOM05D000113 ORTHO05D008110 8.6e-07 58.5 46 63.0
vmacro15008 Vaccinium macrocarpon HOM05D002674 ORTHO05D426855 7.3e-06 55.5 36 72.2


User provided reference genes

Program Settings