Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 6.6e-103 377.5 206 100.0
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 1.0e-74 283.9 204 74.0
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 1.4e-68 263.5 205 71.7
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 1.8e-68 263.1 209 68.4
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 1.1e-65 253.8 220 63.6
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 2.5e-65 252.7 222 64.4
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 3.2e-65 252.3 217 65.4
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 1.1e-62 243.8 220 61.4
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 2.2e-61 239.6 174 70.1
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.7e-61 238.8 202 64.4
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 4.8e-61 238.4 225 60.0
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 1.4e-60 236.9 210 63.8
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 1.4e-60 236.9 212 61.3
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 2.4e-60 236.1 209 62.7
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 3.1e-60 235.7 209 62.7
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 4.1e-60 235.3 203 64.5
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 5.3e-60 235.0 202 65.3
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 5.3e-60 235.0 202 65.3
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 6.9e-60 234.6 205 61.5
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 9.1e-60 234.2 202 65.3
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 1.2e-59 233.8 212 60.8
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 2.6e-59 232.6 208 62.5
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 3.4e-59 232.3 200 63.5
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 5.9e-59 231.5 197 63.5
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 7.7e-59 231.1 206 59.7
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.3e-58 230.3 205 62.9
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 2.2e-58 229.6 203 62.1
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 2.2e-58 229.6 181 66.9
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 2.2e-58 229.6 214 60.3
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 2.9e-58 229.2 181 66.3
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 3.8e-58 228.8 206 60.7
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 3.8e-58 228.8 206 66.5
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 5.0e-58 228.4 201 61.2
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 6.5e-58 228.0 206 59.2
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 6.5e-58 228.0 210 59.0
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 8.5e-58 227.6 204 60.8
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 8.5e-58 227.6 224 59.4
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 8.5e-58 227.6 206 59.7
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 8.5e-58 227.6 197 63.5
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 1.4e-57 226.9 206 60.2
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 1.9e-57 226.5 200 60.5
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 2.5e-57 226.1 199 59.8
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 5.5e-57 224.9 200 60.5
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 9.4e-57 224.2 185 64.3
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 9.4e-57 224.2 199 60.8
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 2.1e-56 223.0 210 58.6
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 2.1e-56 223.0 217 58.1
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 2.7e-56 222.6 200 60.5
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 2.7e-56 222.6 212 59.9
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 4.7e-56 221.9 195 61.0
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 4.7e-56 221.9 200 60.0
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 4.7e-56 221.9 200 60.0
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 4.7e-56 221.9 200 60.0
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 4.7e-56 221.9 200 60.0
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 6.1e-56 221.5 185 63.2
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 7.9e-56 221.1 159 71.1
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 7.9e-56 221.1 205 59.5
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 1.0e-55 220.7 210 57.6
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 1.0e-55 220.7 199 61.3
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.0e-55 220.7 193 62.7
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.0e-55 220.7 193 62.7
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 1.0e-55 220.7 201 60.7
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 1.4e-55 220.3 173 65.3
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 1.4e-55 220.3 209 59.3
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 1.4e-55 220.3 200 60.0
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 1.8e-55 219.9 200 59.5
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 1.8e-55 219.9 200 60.0
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 1.8e-55 219.9 200 60.0
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 1.8e-55 219.9 159 70.4
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.8e-55 219.9 159 70.4
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.8e-55 219.9 159 70.4
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.8e-55 219.9 159 70.4
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 2.3e-55 219.5 200 60.0
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 3.0e-55 219.2 207 60.4
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 3.0e-55 219.2 219 58.4
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 3.0e-55 219.2 207 58.9
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.9e-55 218.8 158 69.6
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 5.2e-55 218.4 216 56.5
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 5.2e-55 218.4 158 69.6
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 5.2e-55 218.4 216 59.3
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 5.2e-55 218.4 200 62.5
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 6.7e-55 218.0 165 67.3
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 8.8e-55 217.6 180 64.4
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.1e-54 217.2 209 58.4
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 1.1e-54 217.2 216 58.3
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 2.0e-54 216.5 205 58.0
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 2.0e-54 216.5 203 64.0
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 2.6e-54 216.1 203 59.6
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 2.6e-54 216.1 207 57.5
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 3.3e-54 215.7 218 58.3
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 3.3e-54 215.7 215 59.1
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 4.4e-54 215.3 205 59.0
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 5.7e-54 214.9 196 59.7
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.8e-53 212.6 201 58.2
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 4.8e-53 211.8 186 62.4
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 4.8e-53 211.8 207 57.0
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 8.2e-53 211.1 207 58.0
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.4e-52 210.3 199 58.8
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 1.4e-52 210.3 216 56.9
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 1.4e-52 210.3 213 58.7
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.4e-52 209.5 199 57.3
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 3.1e-52 209.1 214 56.1
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 1.2e-51 207.2 122 81.1
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 2.0e-51 206.5 122 77.9
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 5.9e-51 204.9 120 81.7
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 5.9e-51 204.9 200 59.0
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 1.7e-50 203.4 217 55.3
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 2.9e-50 202.6 189 58.2
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 3.8e-50 202.2 220 52.3
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 8.5e-50 201.1 270 44.4
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 9.4e-49 197.6 234 53.4
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.6e-48 195.7 211 54.5
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 4.7e-48 195.3 185 58.4
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 8.0e-48 194.5 205 54.6
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 1.4e-47 193.7 211 56.4
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.8e-47 193.4 124 71.8
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 6.7e-47 191.4 299 43.1
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 9.7e-46 187.6 210 51.9
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 1.3e-45 187.2 155 64.5
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 2.2e-45 186.4 126 69.0
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 9.1e-44 181.0 158 59.5
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 1.6e-43 180.3 119 75.6
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 2.0e-43 179.9 119 75.6
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 2.7e-43 179.5 214 56.5
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 1.7e-42 176.8 159 55.3
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 2.9e-42 176.0 100 86.0
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 1.8e-36 156.8 159 54.1
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 9.1e-36 154.5 116 61.2
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 3.5e-35 152.5 116 60.3
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 4.5e-35 152.1 93 77.4
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 6.5e-34 148.3 115 60.0
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 9.5e-33 144.4 116 56.9
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 1.2e-32 144.1 213 45.1
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 3.0e-31 139.4 106 58.5
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 3.4e-30 136.0 79 83.5
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 5.7e-30 135.2 106 57.5
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 2.2e-29 133.3 94 64.9
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.1e-25 120.9 79 77.2
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.3e-25 119.0 67 83.6
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.3e-25 119.0 67 83.6
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 1.1e-17 94.4 142 47.2
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 1.9e-17 93.6 58 75.9
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 2.6e-14 83.2 147 43.5
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 7.5e-14 81.6 50 76.0
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 7.3e-09 65.1 173 31.8
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 8.9e-07 58.2 38 73.7


User provided reference genes

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