Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 5.2e-120 434.5 232 100.0
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 1.5e-82 310.1 243 74.9
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 9.0e-56 221.1 241 61.0
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 6.4e-54 214.9 250 60.0
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 2.1e-33 146.7 122 61.5
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 1.4e-32 144.1 261 39.8
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 1.1e-26 124.4 211 38.4
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 6.3e-25 118.6 222 38.3
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.3e-22 110.9 212 38.2
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 5.5e-21 105.5 168 41.1
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 4.6e-20 102.4 252 36.9
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 1.4e-19 100.9 226 34.5
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.3e-19 100.1 226 33.2
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 3.0e-19 99.8 224 34.4
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 8.8e-19 98.2 131 45.8
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 1.5e-18 97.4 258 32.6
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.5e-18 97.4 211 37.4
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 1.5e-18 97.4 184 35.9
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 2.5e-18 96.7 256 31.2
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 9.7e-18 94.7 187 35.8
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 9.7e-18 94.7 191 36.6
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 1.7e-17 94.0 199 35.7
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 2.8e-17 93.2 113 47.8
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 2.8e-17 93.2 112 47.3
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 2.8e-17 93.2 124 45.2
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 3.7e-17 92.8 113 48.7
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.7e-17 92.8 113 48.7
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.7e-17 92.8 113 48.7
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 6.3e-17 92.0 112 48.2
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 1.4e-16 90.9 123 45.5
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 1.4e-16 90.9 246 32.1
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 1.4e-16 90.9 236 31.4
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 2.4e-16 90.1 110 46.4
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 2.4e-16 90.1 228 38.6
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 3.1e-16 89.7 113 47.8
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 3.1e-16 89.7 129 41.1
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 3.1e-16 89.7 224 33.9
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 4.1e-16 89.4 222 33.8
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 1.2e-15 87.8 121 45.5
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 1.2e-15 87.8 122 44.3
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.2e-15 87.8 114 47.4
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 1.5e-15 87.4 111 45.0
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 2.0e-15 87.0 121 42.1
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 2.0e-15 87.0 212 34.0
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 2.0e-15 87.0 119 44.5
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 4.5e-15 85.9 234 31.2
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 5.9e-15 85.5 113 45.1
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 5.9e-15 85.5 122 44.3
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 5.9e-15 85.5 224 31.7
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 1.0e-14 84.7 117 40.2
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 1.0e-14 84.7 177 36.2
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 1.0e-14 84.7 75 56.0
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 1.3e-14 84.3 67 61.2
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 2.2e-14 83.6 182 36.3
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 2.9e-14 83.2 243 35.8
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 3.8e-14 82.8 221 33.9
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 3.8e-14 82.8 114 43.0
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 5.0e-14 82.4 121 40.5
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 8.5e-14 81.6 114 46.5
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 8.5e-14 81.6 114 46.5
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 8.5e-14 81.6 256 32.0
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 8.5e-14 81.6 205 37.6
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 8.5e-14 81.6 118 42.4
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 1.1e-13 81.3 121 42.1
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.1e-13 81.3 109 44.0
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.1e-13 81.3 109 44.0
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 1.4e-13 80.9 112 45.5
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 1.4e-13 80.9 114 46.5
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 1.4e-13 80.9 114 46.5
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.4e-13 80.9 109 44.0
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 2.5e-13 80.1 122 43.4
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 2.5e-13 80.1 110 40.0
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 3.2e-13 79.7 112 44.6
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 4.2e-13 79.3 234 32.9
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 4.2e-13 79.3 110 45.5
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 4.2e-13 79.3 109 43.1
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 5.5e-13 79.0 243 32.1
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 5.5e-13 79.0 73 56.2
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.2e-12 77.8 109 42.2
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 2.1e-12 77.0 116 41.4
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 6.1e-12 75.5 117 39.3
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 7.9e-12 75.1 108 42.6
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.0e-11 74.7 108 43.5
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.4e-11 74.3 108 43.5
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.8e-11 73.9 108 40.7
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.3e-11 73.6 117 39.3
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 2.3e-11 73.6 113 39.8
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 3.0e-11 73.2 120 37.5
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 3.9e-11 72.8 109 42.2
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.9e-11 72.8 158 36.1
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.1e-10 71.2 109 41.3
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.1e-10 71.2 109 41.3
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 2.6e-10 70.1 123 34.1
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 3.3e-10 69.7 213 29.1
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 4.4e-10 69.3 153 34.6
Atru.chr3.816 Acer truncatum HOM05D004520 ORTHO05D005520 7.4e-10 68.6 104 42.3
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 7.4e-10 68.6 118 37.3
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 9.7e-10 68.2 66 51.5
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 1.7e-09 67.4 114 40.4
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 1.7e-09 67.4 214 32.2
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 1.7e-09 67.4 66 53.0
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 1.7e-09 67.4 66 53.0
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 2.8e-09 66.6 184 35.3
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 2.8e-09 66.6 113 38.9
Lj4P108T23 Lonicera japonica HOM05D004520 ORTHO05D005520 3.7e-09 66.2 72 45.8
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 3.7e-09 66.2 110 37.3
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 4.8e-09 65.9 93 44.1
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 6.3e-09 65.5 121 38.8
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 6.3e-09 65.5 115 36.5
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 8.2e-09 65.1 67 50.7
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 8.2e-09 65.1 109 39.4
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 1.1e-08 64.7 88 44.3
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 3.1e-08 63.2 180 31.1
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 3.1e-08 63.2 80 41.2
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 3.1e-08 63.2 68 48.5
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 4.1e-08 62.8 99 36.4
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 5.3e-08 62.4 109 34.9
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 5.3e-08 62.4 115 37.4
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 7.0e-08 62.0 114 40.4
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 7.0e-08 62.0 105 41.0
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 9.1e-08 61.6 109 34.9
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.2e-07 61.2 99 35.4
unitig_578.g16210 Utricularia gibba HOM05D004520 ORTHO05D005520 1.5e-07 60.8 114 37.7
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 2.0e-07 60.5 131 35.9
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 5.9e-07 58.9 197 31.0
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 7.7e-07 58.5 96 39.6
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 7.7e-07 58.5 96 39.6
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 1.0e-06 58.2 110 38.2
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 1.0e-06 58.2 110 38.2
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 1.3e-06 57.8 197 31.0
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 1.3e-06 57.8 59 49.2
ClCG03G008900 Citrullus lanatus HOM05D004520 ORTHO05D005520 2.9e-06 56.6 118 37.3
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 3.8e-06 56.2 112 35.7
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 3.8e-06 56.2 99 40.4
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 6.5e-06 55.5 159 28.9
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 8.5e-06 55.1 94 38.3
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 8.5e-06 55.1 94 38.3
Lsat_1_v5_gn_9_44740 Lactuca sativa HOM05D004520 ORTHO05D005520 8.5e-06 55.1 115 35.7


User provided reference genes

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