Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33992 Trifolium pratense HOM05D007822 ORTHO05D009360 6.4e-235 817.0 404 100.0
TPR.G19769 Trifolium pratense HOM05D007822 ORTHO05D009360 7.0e-157 557.8 332 84.6
Medtr3g084690 Medicago truncatula HOM05D007822 ORTHO05D009360 1.7e-126 456.8 388 61.1
TPR.G18082 Trifolium pratense HOM05D007822 ORTHO05D009360 3.2e-125 452.6 389 60.2
Medtr1g016400 Medicago truncatula HOM05D007822 ORTHO05D009360 4.2e-125 452.2 388 61.9
Medtr1g017120 Medicago truncatula HOM05D007822 ORTHO05D009360 2.1e-124 449.9 388 61.3
TPR.G18087 Trifolium pratense HOM05D007822 ORTHO05D009360 8.7e-123 444.5 390 60.0
TPR.G34642 Trifolium pratense HOM05D007822 ORTHO05D009360 2.4e-109 399.8 394 57.4
Medtr2g450270 Medicago truncatula HOM05D007822 ORTHO05D009360 4.5e-103 379.0 388 53.6
TPR.G34648 Trifolium pratense HOM05D007822 ORTHO05D009360 3.3e-98 362.8 323 60.4
Glyma.16G161700 Glycine max HOM05D007822 ORTHO05D009360 2.3e-83 313.5 385 45.2
Ca_08383_v3 Cicer arietinum L. HOM05D007822 ORTHO05D009360 2.8e-81 306.6 383 46.0
Glyma.15G092300 Glycine max HOM05D007822 ORTHO05D009360 2.7e-76 290.0 385 44.9
Phvul.003G159000 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 7.4e-74 282.0 376 41.2
Phvul.004G062200 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 1.7e-73 280.8 383 41.5
Phvul.006G052100 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 6.3e-73 278.9 380 41.8
Glyma.03G020200 Glycine max HOM05D007822 ORTHO05D009360 1.4e-72 277.7 372 44.4
Phvul.001G265100 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 2.0e-71 273.9 380 40.5
Phvul.002G276000 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 5.9e-71 272.3 381 40.7
Psat2g094240 Pisum sativum HOM05D007822 ORTHO05D009360 6.5e-70 268.9 237 58.2
Phvul.001G264800 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 3.6e-68 263.1 374 40.6
arahy.Tifrunner.gnm1.ann1.A760R9 Arachis hypogaea HOM05D007822 ORTHO05D009360 4.7e-68 262.7 393 41.2
Dinv16858 Davidia involucrata HOM05D007822 ORTHO05D009360 1.4e-67 261.2 378 39.2
Phvul.004G062300 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 6.7e-67 258.8 338 42.0
Phvul.001G264900 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 2.4e-64 250.4 381 39.9
VMungo1215G0886 Vigna mungo HOM05D007822 ORTHO05D009360 2.0e-63 247.3 394 39.6
Phvul.006G051600 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 3.5e-63 246.5 346 40.5
Lalb_Chr07g0186991 Lupinus albus HOM05D007822 ORTHO05D009360 1.0e-62 245.0 381 40.7
TPR.G33966 Trifolium pratense HOM05D007822 ORTHO05D009360 1.3e-62 244.6 125 94.4
Prupe.2G273800 Prunus persica HOM05D007822 ORTHO05D009360 2.2e-62 243.8 406 38.4
TPR.G19772 Trifolium pratense HOM05D007822 ORTHO05D009360 9.4e-61 238.4 179 70.9
TPR.G19764 Trifolium pratense HOM05D007822 ORTHO05D009360 1.0e-59 235.0 127 93.7
arahy.Tifrunner.gnm1.ann1.6X56G5 Arachis hypogaea HOM05D007822 ORTHO05D009360 5.2e-59 232.6 371 39.6
arahy.Tifrunner.gnm1.ann1.Z44N3D Arachis hypogaea HOM05D007822 ORTHO05D009360 2.6e-58 230.3 389 39.1
arahy.Tifrunner.gnm1.ann1.HWH8LL Arachis hypogaea HOM05D007822 ORTHO05D009360 4.4e-58 229.6 386 39.1
arahy.Tifrunner.gnm1.ann1.N9Y9CH Arachis hypogaea HOM05D007822 ORTHO05D009360 9.8e-58 228.4 391 38.1
arahy.Tifrunner.gnm1.ann1.JJB16R Arachis hypogaea HOM05D007822 ORTHO05D009360 4.8e-57 226.1 383 39.2
Rhsim01G0262200 Rhododendron simsii HOM05D007822 ORTHO05D009360 2.0e-55 220.7 386 35.5
arahy.Tifrunner.gnm1.ann1.2QW5CK Arachis hypogaea HOM05D007822 ORTHO05D009360 1.0e-54 218.4 388 37.6
arahy.Tifrunner.gnm1.ann1.00A0K2 Arachis hypogaea HOM05D007822 ORTHO05D009360 2.3e-54 217.2 356 39.3
Phvul.006G051800 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 5.0e-54 216.1 307 40.4
Rhsim09G0189100 Rhododendron simsii HOM05D007822 ORTHO05D009360 8.0e-52 208.8 384 36.5
arahy.Tifrunner.gnm1.ann1.30JHYY Arachis hypogaea HOM05D007822 ORTHO05D009360 3.7e-49 199.9 369 36.9
Phvul.006G051900 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 2.0e-47 194.1 237 41.4
Oeu042537.1 Olea europaea HOM05D007822 ORTHO05D009360 2.3e-46 190.7 391 33.0
Lalb_Chr23g0273121 Lupinus albus HOM05D007822 ORTHO05D009360 6.6e-46 189.1 220 43.2
Sc09g0001460 Simmondsia chinensis HOM05D007822 ORTHO05D009360 6.6e-46 189.1 389 32.6
arahy.Tifrunner.gnm1.ann1.GB1I3E Arachis hypogaea HOM05D007822 ORTHO05D009360 3.3e-45 186.8 385 34.5
Sc09g0001470 Simmondsia chinensis HOM05D007822 ORTHO05D009360 1.6e-44 184.5 402 35.1
Medtr6g034615 Medicago truncatula HOM05D007822 ORTHO05D009360 6.1e-44 182.6 180 52.2
Rhsim09G0015300 Rhododendron simsii HOM05D007822 ORTHO05D009360 1.8e-43 181.0 378 32.8
arahy.Tifrunner.gnm1.ann1.SE6DU5 Arachis hypogaea HOM05D007822 ORTHO05D009360 2.2e-41 174.1 230 40.9
arahy.Tifrunner.gnm1.ann1.UHL69B Arachis hypogaea HOM05D007822 ORTHO05D009360 3.2e-40 170.2 237 40.9
Psat5g098960 Pisum sativum HOM05D007822 ORTHO05D009360 6.0e-39 166.0 139 61.2
arahy.Tifrunner.gnm1.ann1.B28JH2 Arachis hypogaea HOM05D007822 ORTHO05D009360 1.0e-38 165.2 300 35.3
Medtr3g084660 Medicago truncatula HOM05D007822 ORTHO05D009360 1.6e-36 157.9 146 59.6
arahy.Tifrunner.gnm1.ann1.97QIN4 Arachis hypogaea HOM05D007822 ORTHO05D009360 4.7e-36 156.4 253 36.4
Psat5g099000 Pisum sativum HOM05D007822 ORTHO05D009360 4.0e-35 153.3 122 59.8
TPR.G24719 Trifolium pratense HOM05D007822 ORTHO05D009360 2.9e-33 147.1 123 65.0
arahy.Tifrunner.gnm1.ann1.IQQ1WH Arachis hypogaea HOM05D007822 ORTHO05D009360 4.6e-31 139.8 194 39.2
Medtr3g084700 Medicago truncatula HOM05D007822 ORTHO05D009360 1.9e-29 134.4 132 59.1
VMungo1309G2027 Vigna mungo HOM05D007822 ORTHO05D009360 2.8e-28 130.6 208 39.4
Medtr6g060160 Medicago truncatula HOM05D007822 ORTHO05D009360 1.1e-27 128.6 136 55.1
arahy.Tifrunner.gnm1.ann1.UXA4FW Arachis hypogaea HOM05D007822 ORTHO05D009360 1.2e-26 125.2 324 30.6
TPR.G18088 Trifolium pratense HOM05D007822 ORTHO05D009360 1.3e-25 121.7 92 59.8
arahy.Tifrunner.gnm1.ann1.LY7S5B Arachis hypogaea HOM05D007822 ORTHO05D009360 3.7e-25 120.2 301 30.9
Rhsim10G0180500 Rhododendron simsii HOM05D007822 ORTHO05D009360 5.4e-24 116.3 247 34.8
Medtr6g034605 Medicago truncatula HOM05D007822 ORTHO05D009360 9.2e-24 115.5 108 57.4
TPR.G25296 Trifolium pratense HOM05D007822 ORTHO05D009360 3.0e-22 110.5 93 59.1
RhsimUnG0026200 Rhododendron simsii HOM05D007822 ORTHO05D009360 9.5e-21 105.5 192 30.2
TPR.G11880 Trifolium pratense HOM05D000005 ORTHO05D009360 1.6e-20 104.8 185 38.4
TPR.G8151 Trifolium pratense HOM05D007822 ORTHO05D009360 8.1e-20 102.4 142 45.1
TPR.G5267 Trifolium pratense HOM05D007822 ORTHO05D009360 3.1e-19 100.5 322 25.8
DCAR_014640 Daucus carota HOM05D007822 ORTHO05D009360 5.1e-14 83.2 127 35.4
arahy.Tifrunner.gnm1.ann1.WW5NKJ Arachis hypogaea HOM05D007822 ORTHO05D009360 6.2e-12 76.3 72 54.2
TAR375G1044 Trochodendron aralioides HOM05D007822 ORTHO05D009360 5.3e-11 73.2 339 24.8
Hma1.2p1_0516F.1_g170520 Hydrangea macrophylla HOM05D007162 ORTHO05D007631 1.5e-10 71.6 336 23.2
Hma1.2p1_0013F.1_g008260 Hydrangea macrophylla HOM05D007162 ORTHO05D007631 5.8e-10 69.7 336 22.9
Medtr8g080950 Medicago truncatula HOM05D007822 ORTHO05D009360 1.7e-09 68.2 152 30.9
VMungo0540G1379 Vigna mungo HOM05D007162 ORTHO05D007631 4.9e-09 66.6 333 22.8
Phvul.006G120400 Phaseolus vulgaris HOM05D007162 ORTHO05D007631 8.4e-09 65.9 333 22.8
Actinidia08199 Actinidia chinensis HOM05D007822 ORTHO05D009360 1.1e-08 65.5 61 41.0
AUR62032769 Chenopodium quinoa HOM05D007162 ORTHO05D007631 1.1e-08 65.5 326 24.2
arahy.Tifrunner.gnm1.ann1.JV62Q3 Arachis hypogaea HOM05D007822 ORTHO05D009360 1.4e-08 65.1 70 44.3
Lj6g0014268 Lotus japonicus HOM05D007162 ORTHO05D007631 1.4e-08 65.1 297 21.9
QL04p019991 Quercus lobata HOM05D002420 ORTHO05D002422 1.4e-08 65.1 394 23.6
CiPaw.01G134400 Carya illinoinensis HOM05D007162 ORTHO05D007631 1.9e-08 64.7 323 21.7
QL04p020508 Quercus lobata HOM05D002420 ORTHO05D002422 1.9e-08 64.7 394 23.6
AUR62016246 Chenopodium quinoa HOM05D007162 ORTHO05D007631 3.2e-08 63.9 326 24.2
Manes.03G207900 Manihot esculenta HOM05D007162 ORTHO05D007631 4.2e-08 63.5 338 22.2
EL10Ac3g05554 Beta vulgaris HOM05D007162 ORTHO05D007631 5.4e-08 63.2 342 21.9
CiPaw.01G036300 Carya illinoinensis HOM05D002420 ORTHO05D002422 7.1e-08 62.8 355 23.4
Actinidia18474 Actinidia chinensis HOM05D007162 ORTHO05D007631 9.3e-08 62.4 337 21.4
Glyma.09G032600 Glycine max HOM05D007162 ORTHO05D007631 9.3e-08 62.4 338 22.2
QL06p013113 Quercus lobata HOM05D007162 ORTHO05D007631 9.3e-08 62.4 293 23.5
Aqoxy2G02919 Aquilegia oxysepala HOM05D007162 ORTHO05D007631 2.1e-07 61.2 332 21.7
CSS0000127 Camellia sinensis var. sinensis HOM05D007162 ORTHO05D007631 2.1e-07 61.2 297 20.5
CSS0043507 Camellia sinensis var. sinensis HOM05D007162 ORTHO05D007631 2.1e-07 61.2 297 20.5
Cfa015679 Carpinus fangiana HOM05D007162 ORTHO05D007631 2.1e-07 61.2 327 22.6
Duzib212G0788 Durio zibethinus HOM05D007162 ORTHO05D007631 2.1e-07 61.2 248 25.0
Gohir.D10G181300 Gossypium hirsutum HOM05D007162 ORTHO05D007631 2.1e-07 61.2 328 22.3
Gorai.011G202800 Gossypium raimondii HOM05D007162 ORTHO05D007631 2.1e-07 61.2 328 22.3
Thecc.04G306200 Theobroma cacao HOM05D007162 ORTHO05D007631 2.1e-07 61.2 327 20.2
Haze_00858 Corylus avellana HOM05D007162 ORTHO05D007631 3.5e-07 60.5 289 22.5
Gohir.A10G174800 Gossypium hirsutum HOM05D007162 ORTHO05D007631 4.6e-07 60.1 328 21.6
Duzib151G0437 Durio zibethinus HOM05D007162 ORTHO05D007631 7.8e-07 59.3 334 21.3
Sc20g0001770 Simmondsia chinensis HOM05D015336 ORTHO05D009360 7.8e-07 59.3 281 22.1
COL.COLO4_34567 Corchorus olitorius HOM05D007162 ORTHO05D007631 1.0e-06 58.9 327 21.7
Rhsim04G0242300 Rhododendron simsii HOM05D007162 ORTHO05D007631 1.0e-06 58.9 344 21.2
SalBow8G4721 Salvia bowleyana HOM05D007162 ORTHO05D007631 1.0e-06 58.9 209 25.4
PSO170G0624 Papaver somniferum HOM05D007162 ORTHO05D007631 1.3e-06 58.5 291 21.6
Atru.chr4.3114 Acer truncatum HOM05D007162 ORTHO05D007631 1.7e-06 58.2 251 25.5
Medtr3g070037 Medicago truncatula HOM05D007822 ORTHO05D009360 1.7e-06 58.2 62 46.8
Psat1g162520 Pisum sativum HOM05D007162 ORTHO05D007631 1.7e-06 58.2 296 21.6
vmacro07965 Vaccinium macrocarpon HOM05D007162 ORTHO05D007631 1.7e-06 58.2 337 20.8
Eucgr.B03982 Eucalyptus grandis HOM05D007162 ORTHO05D007631 2.3e-06 57.8 289 23.5
Glyma.15G137700 Glycine max HOM05D007162 ORTHO05D007631 2.3e-06 57.8 249 24.1
Lalb_Chr20g0120651 Lupinus albus HOM05D007162 ORTHO05D007631 2.3e-06 57.8 342 21.3
Hund16586 Selenicereus undatus HOM05D002420 ORTHO05D002422 2.3e-06 57.8 286 22.0
Atru.chr1.870 Acer truncatum HOM05D000664 ORTHO05D000491 3.0e-06 57.4 152 31.6
Potri.010G149000 Populus trichocarpa HOM05D007162 ORTHO05D007631 3.0e-06 57.4 333 22.8
Lj3P834T54 Lonicera japonica HOM05D007162 ORTHO05D007631 3.9e-06 57.0 332 22.0
SGA_v2.0_scaffold157G37347 Striga asiatica HOM05D007162 ORTHO05D007631 3.9e-06 57.0 285 21.4
Ah.07g201630 Amaranthus hybridus HOM05D007162 ORTHO05D007631 5.1e-06 56.6 226 25.7
Haze_19047 Corylus avellana HOM05D000664 ORTHO05D000491 5.1e-06 56.6 223 24.7
RcHm_v2.0_Chr4g0426111 Rosa chinensis HOM05D007162 ORTHO05D007631 5.1e-06 56.6 330 21.8
DCAR_023374 Daucus carota HOM05D007162 ORTHO05D007631 6.6e-06 56.2 327 22.6
Sabra10G0115000 Salix brachista HOM05D007162 ORTHO05D007631 6.6e-06 56.2 313 22.0
Sc13g0007060 Simmondsia chinensis HOM05D007162 ORTHO05D007631 6.6e-06 56.2 340 20.9
Cfa020730 Carpinus fangiana HOM05D000664 ORTHO05D000491 8.7e-06 55.8 220 24.1
FAN07G2689 Fragaria x ananassa HOM05D007162 ORTHO05D007631 8.7e-06 55.8 330 21.8
MD13G1148700 Malus domestica HOM05D007162 ORTHO05D007631 8.7e-06 55.8 327 20.8
TWI09G0041 Tripterygium wilfordii HOM05D007162 ORTHO05D007631 8.7e-06 55.8 290 23.4


User provided reference genes

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