Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3394 Trifolium pratense HOM05D007727 ORTHO05D009078 4.9e-67 257.7 131 100.0
TPR.G11121 Trifolium pratense HOM05D007727 ORTHO05D009078 1.1e-58 229.9 132 91.7
TPR.G3425 Trifolium pratense HOM05D007727 ORTHO05D009078 1.2e-44 183.3 128 77.3
TPR.G3415 Trifolium pratense HOM05D007727 ORTHO05D009078 1.5e-44 183.0 123 78.9
Medtr8g099485 Medicago truncatula HOM05D007727 ORTHO05D009078 1.7e-40 169.5 129 73.6
Medtr8g099475 Medicago truncatula HOM05D007727 ORTHO05D009078 6.6e-32 141.0 120 74.2
Glyma.05G216900 Glycine max HOM05D007727 ORTHO05D009078 5.6e-31 137.9 130 63.8
Glyma.08G023200 Glycine max HOM05D007727 ORTHO05D009078 1.3e-30 136.7 126 62.7
Glyma.08G022800 Glycine max HOM05D007727 ORTHO05D009078 1.5e-28 129.8 131 63.4
Glyma.05G217200 Glycine max HOM05D007727 ORTHO05D009078 8.4e-27 124.0 127 60.6
Phvul.002G298200 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 1.4e-26 123.2 128 57.0
Phvul.002G298600 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 1.4e-26 123.2 128 57.0
Lj4g0015473 Lotus japonicus HOM05D007727 ORTHO05D009078 1.9e-26 122.9 134 56.7
Lalb_Chr05g0224131 Lupinus albus HOM05D007727 ORTHO05D009078 1.5e-23 113.2 135 54.8
Lj4g0008549 Lotus japonicus HOM05D007727 ORTHO05D009078 3.1e-21 105.5 137 52.6
Phvul.002G164400 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 4.0e-21 105.1 129 49.6
Glyma.11G017500 Glycine max HOM05D007727 ORTHO05D009078 4.5e-20 101.7 129 49.6
VMungo0251G2989 Vigna mungo HOM05D007727 ORTHO05D009078 1.0e-19 100.5 131 49.6
Glyma.01G225500 Glycine max HOM05D007727 ORTHO05D009078 2.2e-19 99.4 128 47.7
VMungo1215G2373 Vigna mungo HOM05D007727 ORTHO05D009078 3.0e-16 89.0 126 45.2
LjContig00312_ERROPOS870357g0016151 Lotus japonicus HOM05D007727 ORTHO05D009078 8.7e-16 87.4 130 45.4
Dinv38830 Davidia involucrata HOM05D007727 ORTHO05D009078 6.3e-14 81.3 130 43.1
Hma1.2p1_1746F.1_g300420 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 1.4e-13 80.1 119 43.7
ClCG07G011610 Citrullus lanatus HOM05D007727 ORTHO05D009078 2.4e-13 79.3 100 43.0
Oeu031672.1 Olea europaea HOM05D007727 ORTHO05D009078 7.6e-12 74.3 115 44.3
CsaV3_4G006600 Cucumis sativus L. HOM05D007727 ORTHO05D009078 1.3e-11 73.6 113 42.5
Rhsim02G0243900 Rhododendron simsii HOM05D007727 ORTHO05D009078 1.3e-11 73.6 102 45.1
Cfa012009 Carpinus fangiana HOM05D007727 ORTHO05D009078 2.2e-11 72.8 106 42.5
Potri.001G091400 Populus trichocarpa HOM05D007727 ORTHO05D009078 2.2e-11 72.8 100 40.0
Haze_09064 Corylus avellana HOM05D007727 ORTHO05D009078 2.9e-11 72.4 101 45.5
Haze_09065 Corylus avellana HOM05D007727 ORTHO05D009078 2.9e-11 72.4 102 44.1
Thecc.03G298300 Theobroma cacao HOM05D007727 ORTHO05D009078 5.0e-11 71.6 137 33.6
MELO3C016295.2 Cucumis melo HOM05D007727 ORTHO05D009078 6.5e-11 71.2 139 37.4
Medtr5g009290 Medicago truncatula HOM05D007727 ORTHO05D009078 1.4e-10 70.1 145 41.4
Gohir.D03G083800 Gossypium hirsutum HOM05D007727 ORTHO05D009078 2.5e-10 69.3 83 42.2
Gorai.003G078900 Gossypium raimondii HOM05D007727 ORTHO05D009078 2.5e-10 69.3 83 42.2
Potri.004G151000 Populus trichocarpa HOM05D007727 ORTHO05D009078 2.5e-10 69.3 104 42.3
CiPaw.12G082800 Carya illinoinensis HOM05D007727 ORTHO05D009078 3.2e-10 68.9 111 40.5
Rhsim02G0243800 Rhododendron simsii HOM05D007727 ORTHO05D009078 3.2e-10 68.9 98 43.9
Sabra01G0067800 Salix brachista HOM05D007727 ORTHO05D009078 3.2e-10 68.9 106 36.8
Cfa012003 Carpinus fangiana HOM05D007727 ORTHO05D009078 4.2e-10 68.6 101 43.6
Cfa012008 Carpinus fangiana HOM05D007727 ORTHO05D009078 4.2e-10 68.6 101 43.6
Hma1.2p1_1461F.1_g285070 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 4.2e-10 68.6 127 38.6
CSS0050195 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 7.2e-10 67.8 102 42.2
Duzib205G0888 Durio zibethinus HOM05D007727 ORTHO05D009078 7.2e-10 67.8 130 33.1
Oeu031673.1 Olea europaea HOM05D007727 ORTHO05D009078 1.2e-09 67.0 112 42.0
Psat2g185360 Pisum sativum HOM05D007727 ORTHO05D009078 1.2e-09 67.0 138 37.7
Rhsim02G0244000 Rhododendron simsii HOM05D007727 ORTHO05D009078 1.2e-09 67.0 102 42.2
Gohir.A08G103450 Gossypium hirsutum HOM05D007727 ORTHO05D009078 1.6e-09 66.6 143 33.6
Manes.02G009800 Manihot esculenta HOM05D007727 ORTHO05D009078 1.6e-09 66.6 99 35.4
Potri.003G140200 Populus trichocarpa HOM05D007727 ORTHO05D009078 1.6e-09 66.6 104 41.3
Potri.003G140233 Populus trichocarpa HOM05D007727 ORTHO05D009078 1.6e-09 66.6 104 41.3
Potri.003G140266 Populus trichocarpa HOM05D007727 ORTHO05D009078 1.6e-09 66.6 104 41.3
Gohir.A02G100000 Gossypium hirsutum HOM05D007727 ORTHO05D009078 2.1e-09 66.2 83 41.0
Hma1.2p1_1461F.1_g285060 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 2.1e-09 66.2 50 60.0
Hma1.2p1_2808F.1_g328866 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 2.1e-09 66.2 50 60.0
Sed0007502 Sechium edule HOM05D007727 ORTHO05D009078 2.1e-09 66.2 94 39.4
Sabra01G0067700 Salix brachista HOM05D007727 ORTHO05D009078 2.7e-09 65.9 106 35.8
Gorai.004G133300 Gossypium raimondii HOM05D007727 ORTHO05D009078 3.5e-09 65.5 139 33.1
TPR.G25603 Trifolium pratense HOM05D007727 ORTHO05D009078 3.5e-09 65.5 144 36.1
Gohir.D08G130400 Gossypium hirsutum HOM05D007727 ORTHO05D009078 4.6e-09 65.1 113 37.2
MSTRG.25675 Avicennia marina HOM05D007727 ORTHO05D009078 6.1e-09 64.7 122 32.8
QL02p030384 Quercus lobata HOM05D007727 ORTHO05D009078 6.1e-09 64.7 109 39.4
CiPaw.12G082600 Carya illinoinensis HOM05D007727 ORTHO05D009078 7.9e-09 64.3 111 37.8
QL02p030408 Quercus lobata HOM05D007727 ORTHO05D009078 7.9e-09 64.3 130 35.4
Rhsim02G0243600 Rhododendron simsii HOM05D007727 ORTHO05D009078 2.3e-08 62.8 99 40.4
QL02p030393 Quercus lobata HOM05D007727 ORTHO05D009078 3.0e-08 62.4 110 37.3
COL.COLO4_10705 Corchorus olitorius HOM05D007727 ORTHO05D009078 5.1e-08 61.6 106 36.8
Rhsim02G0243700 Rhododendron simsii HOM05D007727 ORTHO05D009078 6.7e-08 61.2 112 37.5
Eucgr.D01744 Eucalyptus grandis HOM05D007727 ORTHO05D009078 1.5e-07 60.1 63 46.0
Sed0000706 Sechium edule HOM05D007727 ORTHO05D009078 1.5e-07 60.1 82 36.6
QL02p030389 Quercus lobata HOM05D007727 ORTHO05D009078 2.5e-07 59.3 110 33.6
CSS0019090 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 7.4e-07 57.8 129 31.0
FvH4_5g04620 Fragaria vesca HOM05D007727 ORTHO05D009078 7.4e-07 57.8 133 34.6
FAN18G4426 Fragaria x ananassa HOM05D007727 ORTHO05D009078 7.4e-07 57.8 133 34.6
FAN04G2059 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.3e-06 57.0 125 35.2
FAN18G0179 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.3e-06 57.0 123 35.8
CiPaw.11G121100 Carya illinoinensis HOM05D007727 ORTHO05D009078 1.6e-06 56.6 50 50.0
FAN13G2104 Fragaria x ananassa HOM05D007727 ORTHO05D009078 2.8e-06 55.8 107 37.4
FAN13G3265 Fragaria x ananassa HOM05D007727 ORTHO05D009078 2.8e-06 55.8 107 37.4
FAN08G2749 Fragaria x ananassa HOM05D007727 ORTHO05D009078 3.7e-06 55.5 132 31.1
CANSAT21G1217 Cannabis sativa HOM05D007727 ORTHO05D009078 4.8e-06 55.1 51 49.0
Eucgr.D01742 Eucalyptus grandis HOM05D007727 ORTHO05D009078 4.8e-06 55.1 46 52.2
Solyc08g082380.1 Solanum lycopersicum HOM05D011491 ORTHO05D009078 6.3e-06 54.7 121 36.4
PGSC0003DMG400012144 Solanum tuberosum HOM05D011491 ORTHO05D009078 8.2e-06 54.3 113 37.2


User provided reference genes

Program Settings